mRNA_M-pyrifera_M_contig86346.20112.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86346.20112.1
Unique NamemRNA_M-pyrifera_M_contig86346.20112.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86346.20112.1 vs. uniprot
Match: D7FW61_ECTSI (Conserved oligomeric Golgi complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW61_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.960e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:   20 QLMVGSRYHELIESADSIVSMKETGTEVLCLLRDFPGACSNVLEEV 157
            QLMVGSRYHELIESADSIVSMKETG EVL LLR FP ACSNVL++V
Sbjct:   35 QLMVGSRYHELIESADSIVSMKETGAEVLGLLRKFPQACSNVLQQV 80
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BLAST of mRNA_M-pyrifera_M_contig86346.20112.1 vs. uniprot
Match: A0A7S3YF54_HETAK (Conserved oligomeric Golgi complex subunit 1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF54_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 1.210e-6
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 2 
Query:   20 QLMVGSRYHELIESADSIVSMKETGTEVLCLLRDFPGACSNVLEEVRK 163
            QLMVGSRYHE+I+SADSIV MKE   +V+ LL  FP     ++E V K
Sbjct:   77 QLMVGSRYHEIIDSADSIVEMKEEVQQVVELLIAFPKDYKGLVENVPK 124
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BLAST of mRNA_M-pyrifera_M_contig86346.20112.1 vs. uniprot
Match: A0A7R9YE28_9STRA (Conserved oligomeric Golgi complex subunit 1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE28_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.480e-6
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 2 
Query:   20 QLMVGSRYHELIESADSIVSMKETGTEVLCLLRDFPGACSNVLEEVRKFSLLGFGQCLHVLLTLPWSI*GLSPRMISPTQQTMTLM 277
            QLMVGSRYHELIESAD IV+M++    V   L+D     S++ E +++       + L  LL    S+  +S  +  P Q T+T++
Sbjct:   58 QLMVGSRYHELIESADHIVTMRDNVVHVARSLQDVGDEVSSICERIQE----RHQKSLSALLDATESVDSVSSTL-PPLQTTLTIL 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86346.20112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FW61_ECTSI2.960e-1586.96Conserved oligomeric Golgi complex subunit 1 n=2 T... [more]
A0A7S3YF54_HETAK1.210e-658.33Conserved oligomeric Golgi complex subunit 1 (Frag... [more]
A0A7R9YE28_9STRA8.480e-638.37Conserved oligomeric Golgi complex subunit 1 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86346contigM-pyrifera_M_contig86346:448..776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size329
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.4665422-CDS-M-pyrifera_M_contig86346:447..7621622816773.4665422-CDS-M-pyrifera_M_contig86346:447..762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86346 448..762 +
1692278170.1010075-CDS-M-pyrifera_M_contig86346:447..7621692278170.1010075-CDS-M-pyrifera_M_contig86346:447..762Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86346 448..762 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.4788141-UTR-M-pyrifera_M_contig86346:762..7761622816773.4788141-UTR-M-pyrifera_M_contig86346:762..776Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86346 763..776 +
1692278170.113072-UTR-M-pyrifera_M_contig86346:762..7761692278170.113072-UTR-M-pyrifera_M_contig86346:762..776Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86346 763..776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86346.20112.1prot_M-pyrifera_M_contig86346.20112.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86346 448..762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86346.20112.1

>prot_M-pyrifera_M_contig86346.20112.1 ID=prot_M-pyrifera_M_contig86346.20112.1|Name=mRNA_M-pyrifera_M_contig86346.20112.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MTPLVCPADGGLPVSRADRVCGQHCVHEGDRDGGPVPSPGFPWSMFECAG
RGAKILLVGFWAVSTCATYVALEHLRFEPTYDFPHTADNDTYGCMSTVNR
VLTT*
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mRNA from alignment at M-pyrifera_M_contig86346:448..776+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86346.20112.1 ID=mRNA_M-pyrifera_M_contig86346.20112.1|Name=mRNA_M-pyrifera_M_contig86346.20112.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=329bp|location=Sequence derived from alignment at M-pyrifera_M_contig86346:448..776+ (Macrocystis pyrifera P11B4 male)
ATGACCCCACTTGTTTGCCCAGCTGATGGTGGGCTCCCGGTATCACGAGC
TGATCGAGTCTGCGGACAGCATTGTGTCCATGAAGGAGACCGGGACGGAG
GTCCTGTGCCTTCTCCGGGATTTCCCTGGAGCATGTTCGAATGTGCTGGA
AGAGGTGCGAAAATTCTCCTTGTTGGGTTTTGGGCAGTGTCTACATGTGC
TACTTACGTTGCCCTGGAGCATTTGAGGTTTGAGCCCACGTATGATTTCC
CCCACACAGCAGACAATGACACTTATGGATGCATGTCCACGGTAAACAGA
GTTCTTACGACTTAAAAAAATGATACGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86346:448..776+

>mRNA_M-pyrifera_M_contig86346.20112.1 ID=mRNA_M-pyrifera_M_contig86346.20112.1|Name=mRNA_M-pyrifera_M_contig86346.20112.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig86346:448..776+ (Macrocystis pyrifera P11B4 male)
ATGACCCCACTTGTTTGCCCAGCTGATGGTGGGCTCCCGGTATCACGAGC
TGATCGAGTCTGCGGACAGCATTGTGTCCATGAAGGAGACCGGGACGGAG
GTCCTGTGCCTTCTCCGGGATTTCCCTGGAGCATGTTCGAATGTGCTGGA
AGAGGTGCGAAAATTCTCCTTGTTGGGTTTTGGGCAGTGTCTACATGTGC
TACTTACGTTGCCCTGGAGCATTTGAGGTTTGAGCCCACGTATGATTTCC
CCCACACAGCAGACAATGACACTTATGGATGCATGTCCACGGTAAACAGA
GTTCTTACGACTTAAATGACCCCACTTGTTTGCCCAGCTGATGGTGGGCT
CCCGGTATCACGAGCTGATCGAGTCTGCGGACAGCATTGTGTCCATGAAG
GAGACCGGGACGGAGGTCCTGTGCCTTCTCCGGGATTTCCCTGGAGCATG
TTCGAATGTGCTGGAAGAGGTGCGAAAATTCTCCTTGTTGGGTTTTGGGC
AGTGTCTACATGTGCTACTTACGTTGCCCTGGAGCATTTGAGGTTTGAGC
CCACGTATGATTTCCCCCACACAGCAGACAATGACACTTATGGATGCATG
TCCACGGTAAACAGAGTTCTTACGACTTAA
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