mRNA_M-pyrifera_M_contig86246.20095.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86246.20095.1
Unique NamemRNA_M-pyrifera_M_contig86246.20095.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86246.20095.1 vs. uniprot
Match: A0A5A8CK96_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CK96_CAFRO)

HSP 1 Score: 178 bits (452), Expect = 3.450e-48
Identity = 111/169 (65.68%), Postives = 124/169 (73.37%), Query Frame = 1
Query:   94 PAVFPPYDPGFVGRSYDPSNPQRWRTNEGNPLGTTQPNLFDGVHPRQNCPGMTPPDENGVHWCTHSDAGYCDRRSGTCFCFEGYAGKDCSECNPAFYRGENAT--CVPRVLCPQDCSGXXXXXXXXXXXXXXXXXXXXXXXQSVCPLFDPFCVECDTNQCRACLPGYYL 594
            PA+F PY PGFVGR  + SNP+R+R N G PL  TQPN+F GV PRQ CPGMTP   +G H+CT   AG CDRRSGTCFCFEGY G+ C  C P  +R +NAT  C+PRVLCP  CSG XXXXXXXXXXXXXXXXXXXXXX + CP  D  C ECDT +CRAC  GY L
Sbjct:   32 PAIFEPYHPGFVGRYGEASNPRRFRVNPGGPLTATQPNVFAGVAPRQVCPGMTPELADGAHYCTSERAGLCDRRSGTCFCFEGYEGEACERCRPTHFR-DNATAPCLPRVLCPLACSGAXXXXXXXXXXXXXXXXXXXXXXLARCPGLDAHCSECDTERCRACAEGYAL 199          
BLAST of mRNA_M-pyrifera_M_contig86246.20095.1 vs. uniprot
Match: A0A7S3HQ69_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ69_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.590e-37
Identity = 77/198 (38.89%), Postives = 97/198 (48.99%), Query Frame = 1
Query:    1 LILVLWSVVNVHGYREMPTFNTSDPRVAEAEPAVFPPYDPGFVGRSYDPSNPQRWRTNEGNPLGTTQPNLFDGVHPRQNCPGMTPPDENGVHWCTHSDAGYCDRRSGTCFCFEGYAGKDCSECNPAFYRGENATCVPRVLCPQDCSGXXXXXXXXXXXXXXXXXXXXXXXQSVCPLFDPFCVECDTNQCRACLPGYYL 594
            L +VL+ +V    Y     F    P       + F PYD GFVG   DP N QR R NEG    T Q  L++GV PRQ+CP M  P  +G ++C+  + GYCDRRSGTCFC  GY G DCS+C+ + ++     C P+ LCP DCSG                         +C    P C  C  N+C  C  GYYL
Sbjct:    2 LSVVLFWLVGYFAYTAC-AFRILAPGTTTPNGSYFKPYDKGFVGTYGDPRNFQRERINEGAFETTEQELLYEGVSPRQSCPNMVGPFSDGNYYCSAREFGYCDRRSGTCFCNAGYFGIDCSQCSDSHFK-IGTHCFPKKLCPNDCSGSGECDFASGLCTCLPHRTGSMCETQLCTKHSPLCDTCTENECLKCASGYYL 197          
BLAST of mRNA_M-pyrifera_M_contig86246.20095.1 vs. uniprot
Match: A0A482SJ40_9ARCH (EGF-like domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ40_9ARCH)

HSP 1 Score: 132 bits (333), Expect = 4.980e-35
Identity = 68/162 (41.98%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  109 PYDPGFVGRSYDPSNPQRWRTNEGNPLGTTQPNLFDGVHPRQNCPGMTPPDENGVHWCTHSDAGYCDRRSGTCFCFEGYAGKDCSECNPAFYRGENATCVPRVLCPQDCSGXXXXXXXXXXXXXXXXXXXXXXXQSVCPLFDPFCVECDTNQCRACLPGYYL 594
            PYD GFVG   DPSN QR R NEG      Q +L++GV PRQ+CPGM  P  +G ++C+  + GYCDRRSGTCFC  GY G DC+EC  + ++     C P+ LCP DCSG                         +C      C+ C   +C  C  GYYL
Sbjct:   41 PYDKGFVGIYGDPSNYQRERINEGALETGDQEHLYEGVSPRQSCPGMVGPFSDGAYYCSAREFGYCDRRSGTCFCNTGYKGIDCTECQDSHFK-IGFHCFPKKLCPNDCSGAGTCNYNNGTCTCLPHRTGAQCETLLCSARSKLCLTCTETECLQCAGGYYL 201          
BLAST of mRNA_M-pyrifera_M_contig86246.20095.1 vs. uniprot
Match: D8LIF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF9_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 9.810e-27
Identity = 58/146 (39.73%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  160 RWRTNEGNPLGTTQPNLFDGVHPRQNCPGMTPPDENGVHWCTHSDAGYCDRRSGTCFCFEGYAGKDCSECNPAFYRGENATCVPRVLCPQDCSGXXXXXXXXXXXXXXXXXXXXXXXQSVCP-LFDPFCVECDTNQCRACLPGYYL 594
            R R NEG P   T P L++GV+PRQ CPGM  P ++G+++C   + GYCDRRSGTCFC  GY G  C EC+   Y  +   C P++LCP DCS                           C  +F   C EC  + C +C  GYY+
Sbjct:   20 RERVNEGAPGTPTYPRLYEGVYPRQICPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYE-QGGLCYPKLLCPSDCSEAGTCHHSNGTCSCLPHRVGDDCSSLYCSSVFSSRCTECTADGCTSCESGYYV 164          
BLAST of mRNA_M-pyrifera_M_contig86246.20095.1 vs. uniprot
Match: A0A7S1U3W5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3W5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.890e-22
Identity = 77/152 (50.66%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  157 QRWRTNEGNPLGTT---QPNLFDGVHPRQNCPGMTPPDENGVHWCTHSDAGYCDRRSGTCFCFEGYAGKDCSECNPAFYRGENATCVPRVLCPQDCSGXXXXXXXXXXXXXXXXXXXXXXXQSVCPLFDPFCVECDTNQCRACLPGYYLRNA 603
            +R R NEG P   T   Q  +  GV+PRQ CP M  P  +   +CT    GYCDRRSGTCFC  GY G  C  C P  Y      C P++ CP DCSG XXXXXXXXXXXXXXXXXXXXX    C  FD  C EC +  C  C  G+ +  A
Sbjct:    1 RRERVNEGAPKTPTARVQKGVIPGVNPRQVCPNMVGPLGDRQFYCTSRAHGYCDRRSGTCFCNMGYEGASCESCTPTHY-DSGGICYPKIECPGDCSGNXXXXXXXXXXXXXXXXXXXXXATLNCKTFDALCDECTSTGCVKCHQGFSVSAA 151          
BLAST of mRNA_M-pyrifera_M_contig86246.20095.1 vs. uniprot
Match: A0A1W0A1S2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1S2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.360e-18
Identity = 56/180 (31.11%), Postives = 74/180 (41.11%), Query Frame = 1
Query:  100 VFPPYDPGFVGRSYDPSNPQ-RWRTNEGNPLGTTQPNLFDGVHPRQNCPGMTPPDENGVHWCTHSDAGYCDRRSGTCFCFEGYAGKDCSECNPAFYRGENATCVPRVL--------------CPQDCSGXXXXXXXXXXXXXXXXXXXXXXXQSVCPLFDPFCVECDTNQCRACLPGYYL 594
            +F  Y  G VG   DP+    R   N G       P  ++G     +CP M  P +NG ++C   + GYCDRRSG+C+C +GY G DC+EC P +++     C PR                C  DCSG                       Q  C + D  C  C   QC  C  GYY+
Sbjct:   29 LFNRYAHGIVGYYGDPTTTFFREHVNPGAIFHPDAPTQWNGPSISLSCPSMVGPLDNGEYYCNGKEYGYCDRRSGSCWCNKGYTGIDCTECIPEYFQA-GGICYPRRTSFTISGWLSLHLGNCLNDCSGQGSCNYMTGLCTCNPSRLGSDCSQVSCHVLDTLCQSCSDGQCLQCFSGYYV 207          
BLAST of mRNA_M-pyrifera_M_contig86246.20095.1 vs. uniprot
Match: A0A7S2LQ66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQ66_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.000e-15
Identity = 36/68 (52.94%), Postives = 41/68 (60.29%), Query Frame = 1
Query:  238 CPGMTPPDENGVHWCTHSDAGYCDRRSGTCFCFEGYAGKDCSECNPAFYRGENATCVPRVLCPQDCSG 441
            CP M  P +N  ++C   D GYCDRRSGTCFC EGY G  C EC P  +      C P+ LCP DCSG
Sbjct:   33 CPKMVGPIDN-EYFCRGKDYGYCDRRSGTCFCTEGYMGDACGECAPTHFE-VGGICYPKTLCPNDCSG 98          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86246.20095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5A8CK96_CAFRO3.450e-4865.68Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
A0A7S3HQ69_9STRA3.590e-3738.89Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482SJ40_9ARCH4.980e-3541.98EGF-like domain-containing protein n=1 Tax=archaeo... [more]
D8LIF9_ECTSI9.810e-2739.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1U3W5_9STRA2.890e-2250.66Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A1W0A1S2_9STRA6.360e-1831.11Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S2LQ66_9STRA2.000e-1552.94Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86246contigM-pyrifera_M_contig86246:148..753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog36331.EPrPI00000016948
Preferred nameMEGF11
KEGG koko:K04437,ko:K06572,ko:K20879
KEGG Pathwayko04010,ko04360,ko04510,ko05132,ko05205,map04010,map04360,map04510,map05132,map05205
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Titin isoform N2-B. Source PGD
EggNOG OGs1MC1B@121069,COG5069@1,KOG0518@2759,KOG1218@1,KOG1218@2759
EC2.7.11.1
COG Functional cat.Z
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03400,ko04090,ko04147,ko04812
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.8008122-CDS-M-pyrifera_M_contig86246:147..7531622816772.8008122-CDS-M-pyrifera_M_contig86246:147..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86246 148..753 +
1692278169.7650633-CDS-M-pyrifera_M_contig86246:147..7531692278169.7650633-CDS-M-pyrifera_M_contig86246:147..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86246 148..753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86246.20095.1prot_M-pyrifera_M_contig86246.20095.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86246 148..753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86246.20095.1

>prot_M-pyrifera_M_contig86246.20095.1 ID=prot_M-pyrifera_M_contig86246.20095.1|Name=mRNA_M-pyrifera_M_contig86246.20095.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
LILVLWSVVNVHGYREMPTFNTSDPRVAEAEPAVFPPYDPGFVGRSYDPS
NPQRWRTNEGNPLGTTQPNLFDGVHPRQNCPGMTPPDENGVHWCTHSDAG
YCDRRSGTCFCFEGYAGKDCSECNPAFYRGENATCVPRVLCPQDCSGAGV
CDHATGTCTCDPHRRGLDCSQSVCPLFDPFCVECDTNQCRACLPGYYLRN
AT
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mRNA from alignment at M-pyrifera_M_contig86246:148..753+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86246.20095.1 ID=mRNA_M-pyrifera_M_contig86246.20095.1|Name=mRNA_M-pyrifera_M_contig86246.20095.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig86246:148..753+ (Macrocystis pyrifera P11B4 male)
TTGATTTTAGTGTTGTGGAGTGTTGTAAACGTGCATGGGTATCGAGAGAT GCCAACGTTTAACACGTCGGACCCACGGGTCGCCGAAGCGGAGCCTGCAG TTTTTCCTCCATACGATCCCGGCTTTGTGGGGCGTTCCTATGATCCCTCG AACCCACAGCGGTGGCGGACGAATGAAGGGAATCCGCTGGGGACTACACA GCCAAATCTCTTTGACGGCGTGCATCCTAGACAGAATTGCCCTGGAATGA CTCCTCCTGACGAGAATGGAGTGCATTGGTGCACTCATTCTGATGCTGGG TATTGTGATCGTCGTTCAGGGACTTGTTTTTGTTTTGAAGGGTATGCTGG GAAGGACTGTAGTGAGTGTAATCCTGCATTTTATCGTGGAGAAAATGCTA CTTGTGTCCCACGCGTTTTGTGTCCACAAGATTGTAGTGGGGCTGGGGTC TGTGACCATGCAACTGGTACTTGTACCTGTGATCCACATCGTCGTGGATT AGATTGTTCTCAATCTGTGTGTCCATTGTTTGATCCATTTTGCGTGGAAT GTGACACAAATCAATGTCGTGCTTGTTTGCCTGGGTACTACTTGCGAAAT GCAACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86246:148..753+

>mRNA_M-pyrifera_M_contig86246.20095.1 ID=mRNA_M-pyrifera_M_contig86246.20095.1|Name=mRNA_M-pyrifera_M_contig86246.20095.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1212bp|location=Sequence derived from alignment at M-pyrifera_M_contig86246:148..753+ (Macrocystis pyrifera P11B4 male)
TTGATTTTAGTGTTGTGGAGTGTTGTAAACGTGCATGGGTATCGAGAGAT
GCCAACGTTTAACACGTCGGACCCACGGGTCGCCGAAGCGGAGCCTGCAG
TTTTTCCTCCATACGATCCCGGCTTTGTGGGGCGTTCCTATGATCCCTCG
AACCCACAGCGGTGGCGGACGAATGAAGGGAATCCGCTGGGGACTACACA
GCCAAATCTCTTTGACGGCGTGCATCCTAGACAGAATTGCCCTGGAATGA
CTCCTCCTGACGAGAATGGAGTGCATTGGTGCACTCATTCTGATGCTGGG
TATTGTGATCGTCGTTCAGGGACTTGTTTTTGTTTTGAAGGGTATGCTGG
GAAGGACTGTAGTGAGTGTAATCCTGCATTTTATCGTGGAGAAAATGCTA
CTTGTGTCCCACGCGTTTTGTGTCCACAAGATTGTAGTGGGGCTGGGGTC
TGTGACCATGCAACTGGTACTTGTACCTGTGATCCACATCGTCGTGGATT
AGATTGTTCTCAATCTGTGTGTCCATTGTTTGATCCATTTTGCGTGGAAT
GTGACACAAATCAATGTCGTGCTTGTTTGCCTGGGTACTACTTGCGAAAT
GCAACTTTGATTTTAGTGTTGTGGAGTGTTGTAAACGTGCATGGGTATCG
AGAGATGCCAACGTTTAACACGTCGGACCCACGGGTCGCCGAAGCGGAGC
CTGCAGTTTTTCCTCCATACGATCCCGGCTTTGTGGGGCGTTCCTATGAT
CCCTCGAACCCACAGCGGTGGCGGACGAATGAAGGGAATCCGCTGGGGAC
TACACAGCCAAATCTCTTTGACGGCGTGCATCCTAGACAGAATTGCCCTG
GAATGACTCCTCCTGACGAGAATGGAGTGCATTGGTGCACTCATTCTGAT
GCTGGGTATTGTGATCGTCGTTCAGGGACTTGTTTTTGTTTTGAAGGGTA
TGCTGGGAAGGACTGTAGTGAGTGTAATCCTGCATTTTATCGTGGAGAAA
ATGCTACTTGTGTCCCACGCGTTTTGTGTCCACAAGATTGTAGTGGGGCT
GGGGTCTGTGACCATGCAACTGGTACTTGTACCTGTGATCCACATCGTCG
TGGATTAGATTGTTCTCAATCTGTGTGTCCATTGTTTGATCCATTTTGCG
TGGAATGTGACACAAATCAATGTCGTGCTTGTTTGCCTGGGTACTACTTG
CGAAATGCAACT
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