mRNA_M-pyrifera_M_contig86230.20093.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86230.20093.1
Unique NamemRNA_M-pyrifera_M_contig86230.20093.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86230.20093.1 vs. uniprot
Match: I0ZAU6_COCSC (EGF-like domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0ZAU6_COCSC)

HSP 1 Score: 124 bits (312), Expect = 5.510e-29
Identity = 67/162 (41.36%), Postives = 89/162 (54.94%), Query Frame = 1
Query:    4 WGACNVTCGGGVRRRTVQCVDGSGAA----ASGCVG-TAPASSVVCNSRQCVTHALEVGEWGACNTTCGGGVQSRTVRCVASTGGSVALSQCGGSAPRSSVACGTAPCPGSLCVGRTCSGRGACNATSGACACESGFSGVNCEQQAGCAGVVDGSGQCCPSG 474
            W  CN TCGGG   R V CVD +G A    A+ C G  APA++  CN+  C+ +  ++G WG C+  CGGG+  R V CV  TG +V  ++C G  P   + C   PC    C    C+G+G C    G C C+ GF G  CE    C+G++D SG CCP+G
Sbjct:  266 WSRCNATCGGGTMTRPVTCVDANGNAVADPAAACKGLAAPAAAAACNTAPCLGYTWQIGAWGNCSLACGGGIMERAVTCVDETGQAVNGTECSGVQPADQLQCNVLPCD--FCSLTNCAGQGVCK--KGVCVCQPGFRGSYCEIPPSCSGILDQSGNCCPTG 423          
BLAST of mRNA_M-pyrifera_M_contig86230.20093.1 vs. uniprot
Match: A0A3B9XKE5_9PROT (Uncharacterized protein n=1 Tax=Bdellovibrionales bacterium TaxID=2053517 RepID=A0A3B9XKE5_9PROT)

HSP 1 Score: 82.8 bits (203), Expect = 1.430e-14
Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    4 WGACNVTCGGGVRRRTVQCVDGSGAAA--SGC--VGTAPASSVVCNSRQC-VTHALEVGEWGACNTTCGGGVQSRTVRCVASTGGSVALSQCGGSAPRSSVACGTAPCP 315
            +G C+V CGGG++ ++V C  G G     S C  VG  P SS  CN + C  T+A  VG WG C+ +CGGG QSRTV C  S+G +VA S C  S P  + +C T  CP
Sbjct:   56 FGMCSVPCGGGIQTQSVTCRRGDGVTVDDSFCQDVGVKPNSSRSCNIQACSTTYAWNVGTWGVCSKSCGGGTQSRTVACQTSSGDTVADSYCTSSKPAVNQSCNTDACP 164          
BLAST of mRNA_M-pyrifera_M_contig86230.20093.1 vs. uniprot
Match: A0A4P7ZCR5_9PROT (Uncharacterized protein n=2 Tax=unclassified Azospirillum TaxID=2630922 RepID=A0A4P7ZCR5_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 3.130e-12
Identity = 48/106 (45.28%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    4 WGACNVTCGGGVRRRTVQCV--DGSGAAASGCVGTAPASSVVCNSRQCVTHALEVGEWGACNTTCGGGVQSRTVRCVASTGGSVALSQCGGSAPRSSVACGTAPCP 315
            WGAC   CG   R R+V C   DG   A S C    P +   C S    T+A +VG+WG C+ +CGGG +SR+V C  S G  V  S CG SAP SS  C T  CP
Sbjct:  307 WGACENACGASSRSRSVWCERSDGVTVADSFCGAGKPQAVEACTSYATCTYAWQVGDWGGCSASCGGGWRSRSVWCRRSNGEQVDGSYCG-SAPASSEQCNTQACP 411          
BLAST of mRNA_M-pyrifera_M_contig86230.20093.1 vs. uniprot
Match: A0A0L0DTW1_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DTW1_THETB)

HSP 1 Score: 75.5 bits (184), Expect = 4.960e-12
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    4 WGACNVTCGGGVRRRTVQCVDGSGAAASGCV----GTAPASSVVCNSRQCVTHALEVGEWGACNTTCGGGVQSRTVRCVAS-TGGSVALSQC-GGSAPRSSVACGTAPC 312
            +GAC+V+CGGGV  R V C   SG      +       P++S  CN++ C T++ + G +GAC+  CGGG QSR+V CV S TG  VA + C  GS P +S +C +  C
Sbjct:  544 YGACSVSCGGGVATRPVTCQLASGTVIDDALCEIEAAKPSTSQACNTQSCATYSWQTGSFGACSVACGGGSQSRSVDCVESATGTIVAETNCDAGSKPATSQSCNSQVC 652          
BLAST of mRNA_M-pyrifera_M_contig86230.20093.1 vs. uniprot
Match: A0A8D8YYB5_9HEMI (A disintegrin and metalloproteinase with thrombospondin motifs 9 n=6 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8YYB5_9HEMI)

HSP 1 Score: 73.2 bits (178), Expect = 3.470e-11
Identity = 40/89 (44.94%), Postives = 47/89 (52.81%), Query Frame = 1
Query:    1 RWGACNVTCGGGVRRRTVQCVDGSGAAASGCV-GTAPASSVVCNSRQCVTHALEVGEWGACNTTCGGGVQSRTVRCVASTGGSVALSQC 264
            RW  C+  CGGG+RRRTV+C +        C  G  P SS  CN   CVT     G W  CN+TCGGG Q R V C    G ++A S C
Sbjct: 1414 RWSECSAACGGGIRRRTVECYNELNQLGRTCEPGEKPESSGTCNEHPCVTGDWIYGGWSECNSTCGGGHQHRQVECQDRAGITLAESSC 1502          
BLAST of mRNA_M-pyrifera_M_contig86230.20093.1 vs. uniprot
Match: A0A6J2VKU0_CHACN (A disintegrin and metalloproteinase with thrombospondin motifs 9 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VKU0_CHACN)

HSP 1 Score: 71.2 bits (173), Expect = 1.560e-10
Identity = 48/116 (41.38%), Postives = 59/116 (50.86%), Query Frame = 1
Query:    4 WGACNVTCGGGVRRRTVQCVDGSGAAASG--CVGTA-PASSVVCNSRQCVTHALEVGEWGACNTTCGGGVQSRTVRCVASTGGS-------VALSQCGGSAPRSSVACGTAPCPGS 321
            W AC+ TCG G+RRRTV C+D SG       CVG   P  S  CN++ C    +  GEW  C+ TCG G Q R V C     G+        +LS C G+ P S + C   PCP S
Sbjct: 1560 WQACSQTCGSGLRRRTVACLDPSGEEVHEMYCVGQRKPTESEPCNTQPCEFIWI-TGEWTECSVTCGQGYQRRLVSCSEVHAGNDNYEYGHQSLSNCPGNPPESFMVCNLTPCPSS 1674          
BLAST of mRNA_M-pyrifera_M_contig86230.20093.1 vs. uniprot
Match: A0A8D9FFH3_9HEMI (A disintegrin and metalloproteinase with thrombospondin motifs 9 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9FFH3_9HEMI)

HSP 1 Score: 70.5 bits (171), Expect = 2.790e-10
Identity = 36/76 (47.37%), Postives = 41/76 (53.95%), Query Frame = 1
Query:    1 RWGACNVTCGGGVRRRTVQCVDGSGAAASGCV-GTAPASSVVCNSRQCVTHALEVGEWGACNTTCGGGVQSRTVRC 225
            RW  C+  CGGG+RRRTV+C +        C  G  P SS  CN   CVT     G W  CN+TCGGG Q R V C
Sbjct: 1409 RWSECSAACGGGIRRRTVECYNELNQLGRTCEPGEKPESSGTCNEHPCVTGDWIYGGWSECNSTCGGGHQHRQVEC 1484          
BLAST of mRNA_M-pyrifera_M_contig86230.20093.1 vs. uniprot
Match: A0A8D0G8S9_SPHPU (Papilin, proteoglycan like sulfated glycoprotein n=2 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0G8S9_SPHPU)

HSP 1 Score: 70.1 bits (170), Expect = 3.640e-10
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    4 WGACNVTCGGGVRRRTVQCVDGSGAAASGCVGTA--------PASSVVCNSRQCVTHALEVGEWGACNTTCGGGVQSRTVRC 225
            WGAC+ TCGGG + R+V C+  +G  + G V  A        P S+  CN RQC T ++  G W  C+++CG GVQ+RTV C
Sbjct:  366 WGACSATCGGGTQTRSVYCISYNGQGSQGAVNDAECVALAERPHSTQACNMRQCATWSM--GPWSECSSSCGEGVQTRTVIC 445          
BLAST of mRNA_M-pyrifera_M_contig86230.20093.1 vs. uniprot
Match: A0A8D0G8Z7_SPHPU (Papilin, proteoglycan like sulfated glycoprotein n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0G8Z7_SPHPU)

HSP 1 Score: 70.1 bits (170), Expect = 3.670e-10
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    4 WGACNVTCGGGVRRRTVQCVDGSGAAASGCVGTA--------PASSVVCNSRQCVTHALEVGEWGACNTTCGGGVQSRTVRC 225
            WGAC+ TCGGG + R+V C+  +G  + G V  A        P S+  CN RQC T ++  G W  C+++CG GVQ+RTV C
Sbjct:  357 WGACSATCGGGTQTRSVYCISYNGQGSQGAVNDAECVALAERPHSTQACNMRQCATWSM--GPWSECSSSCGEGVQTRTVIC 436          
BLAST of mRNA_M-pyrifera_M_contig86230.20093.1 vs. uniprot
Match: A0A7K8N0X9_CASCA (PPN protein (Fragment) n=1 Tax=Casuarius casuarius TaxID=8787 RepID=A0A7K8N0X9_CASCA)

HSP 1 Score: 68.9 bits (167), Expect = 9.120e-10
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    4 WGACNVTCGGGVRRRTVQCVDGSGAAASGCVGTA--------PASSVVCNSRQCVTHALEVGEWGACNTTCGGGVQSRTVRC 225
            WG+C+ TCGGG + R+V CV   G ++ G V  A        P SS  CN RQC T +   G W  C+T+CG GVQ RTV C
Sbjct:  351 WGSCSATCGGGTQTRSVYCVAYDGQSSQGVVDNAECMAFAQQPRSSQPCNMRQCATWST--GPWSECSTSCGEGVQIRTVTC 430          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86230.20093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I0ZAU6_COCSC5.510e-2941.36EGF-like domain-containing protein n=1 Tax=Coccomy... [more]
A0A3B9XKE5_9PROT1.430e-1445.87Uncharacterized protein n=1 Tax=Bdellovibrionales ... [more]
A0A4P7ZCR5_9PROT3.130e-1245.28Uncharacterized protein n=2 Tax=unclassified Azosp... [more]
A0A0L0DTW1_THETB4.960e-1242.20Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A8D8YYB5_9HEMI3.470e-1144.94A disintegrin and metalloproteinase with thrombosp... [more]
A0A6J2VKU0_CHACN1.560e-1041.38A disintegrin and metalloproteinase with thrombosp... [more]
A0A8D9FFH3_9HEMI2.790e-1047.37A disintegrin and metalloproteinase with thrombosp... [more]
A0A8D0G8S9_SPHPU3.640e-1043.90Papilin, proteoglycan like sulfated glycoprotein n... [more]
A0A8D0G8Z7_SPHPU3.670e-1043.90Papilin, proteoglycan like sulfated glycoprotein n... [more]
A0A7K8N0X9_CASCA9.120e-1046.34PPN protein (Fragment) n=1 Tax=Casuarius casuarius... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86230contigM-pyrifera_M_contig86230:126..833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score127.1
Seed ortholog evalue1.1e-26
Seed eggNOG ortholog248742.XP_005652309.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Thrombospondin type 1 repeats
EggNOG OGs34PEX@3041,389UW@33090,KOG3538@1,KOG3538@2759
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size708
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.7310946-CDS-M-pyrifera_M_contig86230:125..8331622816772.7310946-CDS-M-pyrifera_M_contig86230:125..833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86230 126..833 -
1692278169.73936-CDS-M-pyrifera_M_contig86230:125..8331692278169.73936-CDS-M-pyrifera_M_contig86230:125..833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86230 126..833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86230.20093.1prot_M-pyrifera_M_contig86230.20093.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86230 126..833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86230.20093.1

>prot_M-pyrifera_M_contig86230.20093.1 ID=prot_M-pyrifera_M_contig86230.20093.1|Name=mRNA_M-pyrifera_M_contig86230.20093.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=236bp
RWGACNVTCGGGVRRRTVQCVDGSGAAASGCVGTAPASSVVCNSRQCVTH
ALEVGEWGACNTTCGGGVQSRTVRCVASTGGSVALSQCGGSAPRSSVACG
TAPCPGSLCVGRTCSGRGACNATSGACACESGFSGVNCEQQAGCAGVVDG
SGQCCPSGVLSASGACCSGSSATLDGSGSCCASGSVDACGVCDGSAVLVD
VLGACCSSRTDASGVCCASGEVDGCGVCDGSDNCAV
back to top

mRNA from alignment at M-pyrifera_M_contig86230:126..833-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86230.20093.1 ID=mRNA_M-pyrifera_M_contig86230.20093.1|Name=mRNA_M-pyrifera_M_contig86230.20093.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig86230:126..833- (Macrocystis pyrifera P11B4 male)
CGGTGGGGCGCGTGCAATGTGACGTGCGGCGGCGGCGTGCGGCGGCGCAC GGTGCAGTGCGTGGACGGCAGCGGTGCGGCGGCGAGCGGGTGCGTGGGCA CGGCGCCGGCGTCGAGCGTGGTGTGCAACAGCCGTCAGTGCGTGACGCAC GCGCTGGAGGTGGGAGAGTGGGGCGCGTGCAACACGACGTGCGGTGGCGG TGTGCAGAGCCGCACGGTGCGGTGCGTGGCGTCGACTGGCGGGTCGGTGG CGCTGTCGCAGTGCGGCGGTTCTGCGCCGAGGAGCAGCGTGGCGTGCGGG ACTGCGCCGTGCCCGGGTTCTCTGTGCGTCGGGCGCACGTGCAGCGGGCG CGGCGCGTGCAACGCGACGTCGGGTGCGTGTGCGTGCGAGAGCGGGTTCA GCGGGGTGAACTGCGAGCAGCAGGCCGGGTGCGCCGGGGTGGTGGACGGC AGCGGGCAGTGCTGTCCGTCGGGCGTGCTGAGCGCGTCGGGCGCGTGCTG CTCTGGTTCGTCGGCGACGCTGGACGGGAGCGGGTCGTGCTGCGCGAGCG GTAGCGTGGACGCTTGCGGTGTGTGCGACGGAAGCGCGGTGCTGGTGGAT GTGCTGGGCGCGTGTTGTTCGAGCCGGACGGACGCGTCGGGCGTGTGCTG TGCGAGCGGAGAGGTGGACGGGTGCGGCGTGTGCGACGGGAGTGACAACT GCGCGGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig86230:126..833-

>mRNA_M-pyrifera_M_contig86230.20093.1 ID=mRNA_M-pyrifera_M_contig86230.20093.1|Name=mRNA_M-pyrifera_M_contig86230.20093.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1416bp|location=Sequence derived from alignment at M-pyrifera_M_contig86230:126..833- (Macrocystis pyrifera P11B4 male)
CGGTGGGGCGCGTGCAATGTGACGTGCGGCGGCGGCGTGCGGCGGCGCAC
GGTGCAGTGCGTGGACGGCAGCGGTGCGGCGGCGAGCGGGTGCGTGGGCA
CGGCGCCGGCGTCGAGCGTGGTGTGCAACAGCCGTCAGTGCGTGACGCAC
GCGCTGGAGGTGGGAGAGTGGGGCGCGTGCAACACGACGTGCGGTGGCGG
TGTGCAGAGCCGCACGGTGCGGTGCGTGGCGTCGACTGGCGGGTCGGTGG
CGCTGTCGCAGTGCGGCGGTTCTGCGCCGAGGAGCAGCGTGGCGTGCGGG
ACTGCGCCGTGCCCGGGTTCTCTGTGCGTCGGGCGCACGTGCAGCGGGCG
CGGCGCGTGCAACGCGACGTCGGGTGCGTGTGCGTGCGAGAGCGGGTTCA
GCGGGGTGAACTGCGAGCAGCAGGCCGGGTGCGCCGGGGTGGTGGACGGC
AGCGGGCAGTGCTGTCCGTCGGGCGTGCTGAGCGCGTCGGGCGCGTGCTG
CTCTGGTTCGTCGGCGACGCTGGACGGGAGCGGGTCGTGCTGCGCGAGCG
GTAGCGTGGACGCTTGCGGTGTGTGCGACGGAAGCGCGGTGCTGGTGGAT
GTGCTGGGCGCGTGTTGTTCGAGCCGGACGGACGCGTCGGGCGTGTGCTG
TGCGAGCGGAGAGGTGGACGGGTGCGGCGTGTGCGACGGGAGTGACAACT
GCGCGGTGCGGTGGGGCGCGTGCAATGTGACGTGCGGCGGCGGCGTGCGG
CGGCGCACGGTGCAGTGCGTGGACGGCAGCGGTGCGGCGGCGAGCGGGTG
CGTGGGCACGGCGCCGGCGTCGAGCGTGGTGTGCAACAGCCGTCAGTGCG
TGACGCACGCGCTGGAGGTGGGAGAGTGGGGCGCGTGCAACACGACGTGC
GGTGGCGGTGTGCAGAGCCGCACGGTGCGGTGCGTGGCGTCGACTGGCGG
GTCGGTGGCGCTGTCGCAGTGCGGCGGTTCTGCGCCGAGGAGCAGCGTGG
CGTGCGGGACTGCGCCGTGCCCGGGTTCTCTGTGCGTCGGGCGCACGTGC
AGCGGGCGCGGCGCGTGCAACGCGACGTCGGGTGCGTGTGCGTGCGAGAG
CGGGTTCAGCGGGGTGAACTGCGAGCAGCAGGCCGGGTGCGCCGGGGTGG
TGGACGGCAGCGGGCAGTGCTGTCCGTCGGGCGTGCTGAGCGCGTCGGGC
GCGTGCTGCTCTGGTTCGTCGGCGACGCTGGACGGGAGCGGGTCGTGCTG
CGCGAGCGGTAGCGTGGACGCTTGCGGTGTGTGCGACGGAAGCGCGGTGC
TGGTGGATGTGCTGGGCGCGTGTTGTTCGAGCCGGACGGACGCGTCGGGC
GTGTGCTGTGCGAGCGGAGAGGTGGACGGGTGCGGCGTGTGCGACGGGAG
TGACAACTGCGCGGTG
back to top