mRNA_M-pyrifera_M_contig86205.20089.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86205.20089.1
Unique NamemRNA_M-pyrifera_M_contig86205.20089.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86205.20089.1 vs. uniprot
Match: D8LS83_ECTSI (Putative hydrolase of the alpha/beta fold superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS83_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.480e-11
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    4 PALRTFVDGNASGPVLVFVHGWPDDHTMWDKQV 102
            PALR F DG   GPVL+FVHGWPDDH MWDKQV
Sbjct:   46 PALRMFSDGKDDGPVLLFVHGWPDDHQMWDKQV 78
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BLAST of mRNA_M-pyrifera_M_contig86205.20089.1 vs. uniprot
Match: D8LK39_ECTSI (Short chain dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK39_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 4.260e-11
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 GPALRTFVDGNASGPVLVFVHGWPDDHTMWDKQV 102
            G  LR+F +GN SGP +VFVHGWPDDHT+WD QV
Sbjct:    3 GITLRSFAEGNESGPTVVFVHGWPDDHTLWDAQV 36
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BLAST of mRNA_M-pyrifera_M_contig86205.20089.1 vs. uniprot
Match: D8LS82_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS82_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 5.840e-10
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 PALRTFVDGNASGPVLVFVHGWPDDHTMWDKQV 102
            P LRTF  G   GPV++FVHGWPDDH +WD QV
Sbjct:   13 PGLRTFASGKEDGPVILFVHGWPDDHLLWDAQV 45
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BLAST of mRNA_M-pyrifera_M_contig86205.20089.1 vs. uniprot
Match: A0A7I9YRS8_9MYCO (Putative oxidoreductase EphD n=2 Tax=Mycobacterium TaxID=1763 RepID=A0A7I9YRS8_9MYCO)

HSP 1 Score: 50.8 bits (120), Expect = 2.750e-6
Identity = 17/34 (50.00%), Postives = 23/34 (67.65%), Query Frame = 1 
Query:    1 GPALRTFVDGNASGPVLVFVHGWPDDHTMWDKQV 102
            G  +  + +GNA GP +V VHGWPD H +WD+ V
Sbjct:   17 GVRIAVYEEGNADGPTVVLVHGWPDSHVLWDRVV 50
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BLAST of mRNA_M-pyrifera_M_contig86205.20089.1 vs. uniprot
Match: A0A0B2B651_9ACTN (Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax=Mumia flava TaxID=1348852 RepID=A0A0B2B651_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 5.020e-6
Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 GPALRTFVDGNASGPVLVFVHGWPDDHTMWDKQV 102
            G  L  + DG+ SGP +V VHG+PDDH++WD+ V
Sbjct:   14 GATLAVYRDGDPSGPTVVLVHGFPDDHSVWDRAV 47
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BLAST of mRNA_M-pyrifera_M_contig86205.20089.1 vs. uniprot
Match: A0A257NHT2_9MYCO (Short-chain dehydrogenase (Fragment) n=1 Tax=Mycobacterium sp. 20-66-4 TaxID=1970401 RepID=A0A257NHT2_9MYCO)

HSP 1 Score: 48.9 bits (115), Expect = 5.310e-6
Identity = 17/34 (50.00%), Postives = 22/34 (64.71%), Query Frame = 1 
Query:    1 GPALRTFVDGNASGPVLVFVHGWPDDHTMWDKQV 102
            G  +  + +GNA GP +V VHGWPD H +WD  V
Sbjct:   17 GVRVAVYEEGNAEGPTVVLVHGWPDSHVLWDGVV 50
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BLAST of mRNA_M-pyrifera_M_contig86205.20089.1 vs. uniprot
Match: A0A2G6ED28_9BACT (Alpha/beta hydrolase n=1 Tax=Ignavibacteriae bacterium TaxID=2026749 RepID=A0A2G6ED28_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 1.230e-5
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:   10 LRTFVDGNASGPVLVFVHGWPDDHTMWDKQV 102
            LR F +GN     ++F+HG+P DHTMWD QV
Sbjct:    8 LRVFTNGNKENQAIIFIHGFPYDHTMWDSQV 38
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BLAST of mRNA_M-pyrifera_M_contig86205.20089.1 vs. uniprot
Match: A0A1G0XJR6_9BACT (Alpha/beta hydrolase n=2 Tax=Ignavibacteria TaxID=795747 RepID=A0A1G0XJR6_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 1.700e-5
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:   10 LRTFVDGNASGPVLVFVHGWPDDHTMWDKQV 102
            L  F +GN +   +VFVHG+P DHTMWDKQ+
Sbjct:    8 LSIFTEGNLNNKPIVFVHGFPYDHTMWDKQI 38
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BLAST of mRNA_M-pyrifera_M_contig86205.20089.1 vs. uniprot
Match: A0A7Y2YWV2_9GAMM (Alpha/beta hydrolase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2YWV2_9GAMM)

HSP 1 Score: 48.5 bits (114), Expect = 1.710e-5
Identity = 17/32 (53.12%), Postives = 23/32 (71.88%), Query Frame = 1 
Query:    7 ALRTFVDGNASGPVLVFVHGWPDDHTMWDKQV 102
            A    + GN+ GP LVF+HGWPD+ ++W KQV
Sbjct:    7 ACEYAIQGNSEGPTLVFIHGWPDNASLWRKQV 38
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BLAST of mRNA_M-pyrifera_M_contig86205.20089.1 vs. uniprot
Match: A0A3N0CJ80_9ACTN (Alpha/beta fold hydrolase n=1 Tax=Marmoricola ginsengisoli TaxID=661483 RepID=A0A3N0CJ80_9ACTN)

HSP 1 Score: 48.5 bits (114), Expect = 1.790e-5
Identity = 19/31 (61.29%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:    1 GPALRTFVDGNASGPVLVFVHGWPDDHTMWD 93
            G  L  F  GN  GPVLV VHG+PD+HT+WD
Sbjct:   16 GTRLAVFESGNPEGPVLVAVHGYPDNHTVWD 46
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86205.20089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LS83_ECTSI1.480e-1178.79Putative hydrolase of the alpha/beta fold superfam... [more]
D8LK39_ECTSI4.260e-1170.59Short chain dehydrogenase n=1 Tax=Ectocarpus silic... [more]
D8LS82_ECTSI5.840e-1066.67AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A7I9YRS8_9MYCO2.750e-650.00Putative oxidoreductase EphD n=2 Tax=Mycobacterium... [more]
A0A0B2B651_9ACTN5.020e-652.94Pimeloyl-ACP methyl ester carboxylesterase n=1 Tax... [more]
A0A257NHT2_9MYCO5.310e-650.00Short-chain dehydrogenase (Fragment) n=1 Tax=Mycob... [more]
A0A2G6ED28_9BACT1.230e-554.84Alpha/beta hydrolase n=1 Tax=Ignavibacteriae bacte... [more]
A0A1G0XJR6_9BACT1.700e-558.06Alpha/beta hydrolase n=2 Tax=Ignavibacteria TaxID=... [more]
A0A7Y2YWV2_9GAMM1.710e-553.13Alpha/beta hydrolase n=1 Tax=Xanthomonadales bacte... [more]
A0A3N0CJ80_9ACTN1.790e-561.29Alpha/beta fold hydrolase n=1 Tax=Marmoricola gins... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86205contigM-pyrifera_M_contig86205:160..264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue7.5e-09
Seed eggNOG ortholog2880.D8LS83
Preferred nameEPHX4
KEGG rclassRC01447,RC01728,RC01764,RC02528
KEGG koko:K01253,ko:K22368,ko:K22369
KEGG ReactionR07013,R07014,R07027,R07071,R07072,R07082,R09410,R09417,R09443
KEGG Pathwayko00980,ko04976,ko05204,map00980,map04976,map05204
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004301,GO:0005575,GO:0005622,GO:0005623,GO:0006629,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016787,GO:0016801,GO:0016803,GO:0018904,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0097176,GO:1901360
EggNOG free text desc.10-hydroxy-9-(phosphonooxy)octadecanoate phosphatase activity
EggNOG OGsCOG0596@1,KOG4178@2759
EC3.3.2.10,3.3.2.9
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size105
Cds size105
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.5299137-CDS-M-pyrifera_M_contig86205:159..2641622816772.5299137-CDS-M-pyrifera_M_contig86205:159..264Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86205 160..264 -
1692278169.6178877-CDS-M-pyrifera_M_contig86205:159..2641692278169.6178877-CDS-M-pyrifera_M_contig86205:159..264Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86205 160..264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86205.20089.1prot_M-pyrifera_M_contig86205.20089.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86205 160..264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86205.20089.1

>prot_M-pyrifera_M_contig86205.20089.1 ID=prot_M-pyrifera_M_contig86205.20089.1|Name=mRNA_M-pyrifera_M_contig86205.20089.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=35bp
GPALRTFVDGNASGPVLVFVHGWPDDHTMWDKQV*
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mRNA from alignment at M-pyrifera_M_contig86205:160..264-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86205.20089.1 ID=mRNA_M-pyrifera_M_contig86205.20089.1|Name=mRNA_M-pyrifera_M_contig86205.20089.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=105bp|location=Sequence derived from alignment at M-pyrifera_M_contig86205:160..264- (Macrocystis pyrifera P11B4 male)
GGTCCAGCCTTGAGGACCTTCGTGGACGGAAATGCAAGTGGGCCGGTGTT
GGTCTTTGTCCATGGCTGGCCGGACGACCACACCATGTGGGACAAGCAGG
TGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86205:160..264-

>mRNA_M-pyrifera_M_contig86205.20089.1 ID=mRNA_M-pyrifera_M_contig86205.20089.1|Name=mRNA_M-pyrifera_M_contig86205.20089.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig86205:160..264- (Macrocystis pyrifera P11B4 male)
GGTCCAGCCTTGAGGACCTTCGTGGACGGAAATGCAAGTGGGCCGGTGTT
GGTCTTTGTCCATGGCTGGCCGGACGACCACACCATGTGGGACAAGCAGG
TGTGAGGTCCAGCCTTGAGGACCTTCGTGGACGGAAATGCAAGTGGGCCG
GTGTTGGTCTTTGTCCATGGCTGGCCGGACGACCACACCATGTGGGACAA
GCAGGTGTGA
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