mRNA_M-pyrifera_M_contig86170.20083.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86170.20083.1
Unique NamemRNA_M-pyrifera_M_contig86170.20083.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86170.20083.1 vs. uniprot
Match: A0A7C8ZY55_OPUST (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZY55_OPUST)

HSP 1 Score: 171 bits (434), Expect = 5.540e-51
Identity = 77/152 (50.66%), Postives = 104/152 (68.42%), Query Frame = 1 
Query:    1 DHRWCLTGTPLHNGIGDIHTLLRFLQHDPWADQAWWRKMVSDPFDQGDPSAMPLLQAILHPILLRRTKAMAGEDGKPIVALPPRRVRTKVISMDPLESRFYRALFRHSKREFDGLVAQGRLSHSYTVILTLLLRLRQACDHPRLALGVGKTE 456
            D RWCLTGTP+ N + DI++LLRFL+ +PW + AWW K++  PF++GD   + L+Q+IL PI+LRRTK     +G+PI+ LPP  V+     +   E  FY ALF+ SK +FD  VA+GR+ H+Y  IL LLLRLRQ CDHP L +  G T+
Sbjct:   37 DCRWCLTGTPIQNNLEDIYSLLRFLKVEPWGNWAWWNKLIQKPFEEGDERGLKLVQSILRPIMLRRTKHSVDREGRPILVLPPANVQVIYCELTEAERDFYEALFKKSKVKFDKFVAEGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQ 188
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BLAST of mRNA_M-pyrifera_M_contig86170.20083.1 vs. uniprot
Match: UPI001FB06E7A (DNA repair protein RAD5A isoform X1 n=4 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB06E7A)

HSP 1 Score: 178 bits (451), Expect = 6.950e-49
Identity = 81/152 (53.29%), Postives = 105/152 (69.08%), Query Frame = 1 
Query:    1 DHRWCLTGTPLHNGIGDIHTLLRFLQHDPWADQAWWRKMVSDPFDQGDPSAMPLLQAILHPILLRRTKAMAGEDGKPIVALPPRRVRTKVISMDPLESRFYRALFRHSKREFDGLVAQGRLSHSYTVILTLLLRLRQACDHPRLALGVGKTE 456
            D RWCLTGTP+ N + DI++LLRFL+ +PW + AWW K+V  PFD+GD   + L+Q+IL PI+LRRTK+    DG+PI+ LPP  V+T    +   E  FY ALF+ SK +FD  V QGR+ H+Y  IL LLLRLRQ CDHP L +  G T+
Sbjct:  585 DRRWCLTGTPIQNNLEDIYSLLRFLRIEPWGNWAWWNKLVQKPFDEGDERGLKLVQSILKPIMLRRTKSSTDRDGRPILVLPPADVQTIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQ 736
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BLAST of mRNA_M-pyrifera_M_contig86170.20083.1 vs. uniprot
Match: A0A5A8D5B7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5B7_CAFRO)

HSP 1 Score: 176 bits (446), Expect = 1.790e-48
Identity = 76/146 (52.05%), Postives = 104/146 (71.23%), Query Frame = 1 
Query:    4 HRWCLTGTPLHNGIGDIHTLLRFLQHDPWADQAWWRKMVSDPFDQGDPSAMPLLQAILHPILLRRTKAMAGEDGKPIVALPPRRVRTKVISMDPLESRFYRALFRHSKREFDGLVAQGRLSHSYTVILTLLLRLRQACDHPRLALG 441
            HRW LTGTP+ N + D+H+L+RF++H PW + AWWR++++ PF+ GDP A+P LQA+L P+LLRRTK M   DG+PIV LPP+      +++   E  FY A++  SK  F+G  A G + + Y VIL+LL+RLRQACDHP L LG
Sbjct:  258 HRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEAGDPRALPTLQALLRPLLLRRTKGMRDVDGRPIVVLPPKSEELVWLALSESERAFYDAIYSRSKATFEGFEAAGTVLNQYAVILSLLVRLRQACDHPFLVLG 403
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BLAST of mRNA_M-pyrifera_M_contig86170.20083.1 vs. uniprot
Match: A0A5A8CW93_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW93_CAFRO)

HSP 1 Score: 176 bits (446), Expect = 2.170e-48
Identity = 76/146 (52.05%), Postives = 104/146 (71.23%), Query Frame = 1 
Query:    4 HRWCLTGTPLHNGIGDIHTLLRFLQHDPWADQAWWRKMVSDPFDQGDPSAMPLLQAILHPILLRRTKAMAGEDGKPIVALPPRRVRTKVISMDPLESRFYRALFRHSKREFDGLVAQGRLSHSYTVILTLLLRLRQACDHPRLALG 441
            HRW LTGTP+ N + D+H+L+RF++H PW + AWWR++++ PF+ GDP A+P LQA+L P+LLRRTK M   DG+PIV LPP+      +++   E  FY A++  SK  F+G  A G + + Y VIL+LL+RLRQACDHP L LG
Sbjct:   89 HRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEAGDPRALPTLQALLRPLLLRRTKGMRDVDGRPIVVLPPKSEELVWLALSESERAFYDAIYSRSKATFEGFEAAGTVLNQYAVILSLLVRLRQACDHPFLVLG 234
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BLAST of mRNA_M-pyrifera_M_contig86170.20083.1 vs. uniprot
Match: A0A5A8CAC5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CAC5_CAFRO)

HSP 1 Score: 176 bits (446), Expect = 3.400e-48
Identity = 76/146 (52.05%), Postives = 104/146 (71.23%), Query Frame = 1 
Query:    4 HRWCLTGTPLHNGIGDIHTLLRFLQHDPWADQAWWRKMVSDPFDQGDPSAMPLLQAILHPILLRRTKAMAGEDGKPIVALPPRRVRTKVISMDPLESRFYRALFRHSKREFDGLVAQGRLSHSYTVILTLLLRLRQACDHPRLALG 441
            HRW LTGTP+ N + D+H+L+RF++H PW + AWWR++++ PF+ GDP A+P LQA+L P+LLRRTK M   DG+PIV LPP+      +++   E  FY A++  SK  F+G  A G + + Y VIL+LL+RLRQACDHP L LG
Sbjct:  292 HRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEAGDPRALPTLQALLRPLLLRRTKGMRDVDGRPIVVLPPKSEELVWLALSESERAFYDAIYSRSKATFEGFEAAGTVLNQYAVILSLLVRLRQACDHPFLVLG 437
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BLAST of mRNA_M-pyrifera_M_contig86170.20083.1 vs. uniprot
Match: UPI0012630830 (DNA repair protein RAD5A isoform X1 n=3 Tax=Pistacia vera TaxID=55513 RepID=UPI0012630830)

HSP 1 Score: 175 bits (443), Expect = 8.500e-48
Identity = 78/152 (51.32%), Postives = 105/152 (69.08%), Query Frame = 1 
Query:    1 DHRWCLTGTPLHNGIGDIHTLLRFLQHDPWADQAWWRKMVSDPFDQGDPSAMPLLQAILHPILLRRTKAMAGEDGKPIVALPPRRVRTKVISMDPLESRFYRALFRHSKREFDGLVAQGRLSHSYTVILTLLLRLRQACDHPRLALGVGKTE 456
            D RWCLTGTP+ N +GDI++LLRFL+ +PW   AWW K+V  PF++GD   + L+Q+IL PI+LRRTK+    +G+PI+ LPP  ++     +  +E  FY ALF+ SK +FD  V QGR+ H+Y  IL LLLRLRQ CDHP L +  G T+
Sbjct:  599 DCRWCLTGTPIQNNLGDIYSLLRFLRVEPWGTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADIQVIYCELTDVEKDFYEALFKRSKVKFDKFVEQGRVLHNYASILELLLRLRQCCDHPYLVMSRGDTQ 750
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BLAST of mRNA_M-pyrifera_M_contig86170.20083.1 vs. uniprot
Match: A0A6J0PEI4_ELAGV (DNA repair protein RAD5A isoform X3 n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6J0PEI4_ELAGV)

HSP 1 Score: 174 bits (440), Expect = 9.420e-48
Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 1 
Query:    1 DHRWCLTGTPLHNGIGDIHTLLRFLQHDPWADQAWWRKMVSDPFDQGDPSAMPLLQAILHPILLRRTKAMAGEDGKPIVALPPRRVRTKVISMDPLESRFYRALFRHSKREFDGLVAQGRLSHSYTVILTLLLRLRQACDHPRLALGVGKTE 456
            D RWCLTGTP+ N + DI++LLRFL+ +PWAD   W K++  P+++GD   + L+Q+IL PI+LRRTK+    DG+PI+ LPP  V      M   E  FY ALFR SK +FD  V QGR+ H+Y  IL LLLRLRQ CDHP L +  G T+
Sbjct:  328 DRRWCLTGTPIQNNLEDIYSLLRFLKVEPWADWGLWHKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDRDGRPILVLPPANVEVHYCEMSAAEKDFYEALFRRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQ 479
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BLAST of mRNA_M-pyrifera_M_contig86170.20083.1 vs. uniprot
Match: UPI00053FB0FE (putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FB0FE)

HSP 1 Score: 174 bits (442), Expect = 1.160e-47
Identity = 77/152 (50.66%), Postives = 104/152 (68.42%), Query Frame = 1 
Query:    1 DHRWCLTGTPLHNGIGDIHTLLRFLQHDPWADQAWWRKMVSDPFDQGDPSAMPLLQAILHPILLRRTKAMAGEDGKPIVALPPRRVRTKVISMDPLESRFYRALFRHSKREFDGLVAQGRLSHSYTVILTLLLRLRQACDHPRLALGVGKTE 456
            D+RWCLTGTP+ N + DI++LLRFL+ +PW + AWW K+V  PF++GD   + L+Q+IL PI+LRRTK     +G+PI+ LPP  ++     +   E  FY ALF+ SK +FD  V QGR+ H+Y  IL LLLRLRQ CDHP L +  G T+
Sbjct:  597 DYRWCLTGTPIQNNLTDIYSLLRFLKVEPWGNWAWWNKLVQKPFEEGDERGLKLVQSILRPIMLRRTKCSVDREGRPILVLPPANIQVVYCELSEAEKDFYEALFKKSKVKFDRFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQ 748
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BLAST of mRNA_M-pyrifera_M_contig86170.20083.1 vs. uniprot
Match: UPI0010A469F5 (DNA repair protein RAD5A n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A469F5)

HSP 1 Score: 174 bits (442), Expect = 1.170e-47
Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 1 
Query:    1 DHRWCLTGTPLHNGIGDIHTLLRFLQHDPWADQAWWRKMVSDPFDQGDPSAMPLLQAILHPILLRRTKAMAGEDGKPIVALPPRRVRTKVISMDPLESRFYRALFRHSKREFDGLVAQGRLSHSYTVILTLLLRLRQACDHPRLALGVGKTE 456
            D RWCLTGTP+ N + D+++LLRFL+ +PW   AWW K+V  PF++GD   + L+Q+IL PI+LRRTK     DGKPI+ LPP  V+     +   E  FY ALF+ SK +FD  V QGR+ H+Y  IL LLLRLRQ CDHP L +  G T+
Sbjct:  613 DRRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKHSMDRDGKPIIVLPPAEVQIIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQ 764
[Close]
BLAST of mRNA_M-pyrifera_M_contig86170.20083.1 vs. uniprot
Match: A0A6I9QMJ6_ELAGV (DNA repair protein RAD5A isoform X1 n=3 Tax=Cocoseae TaxID=169705 RepID=A0A6I9QMJ6_ELAGV)

HSP 1 Score: 174 bits (440), Expect = 2.160e-47
Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 1 
Query:    1 DHRWCLTGTPLHNGIGDIHTLLRFLQHDPWADQAWWRKMVSDPFDQGDPSAMPLLQAILHPILLRRTKAMAGEDGKPIVALPPRRVRTKVISMDPLESRFYRALFRHSKREFDGLVAQGRLSHSYTVILTLLLRLRQACDHPRLALGVGKTE 456
            D RWCLTGTP+ N + DI++LLRFL+ +PWAD   W K++  P+++GD   + L+Q+IL PI+LRRTK+    DG+PI+ LPP  V      M   E  FY ALFR SK +FD  V QGR+ H+Y  IL LLLRLRQ CDHP L +  G T+
Sbjct:  597 DRRWCLTGTPIQNNLEDIYSLLRFLKVEPWADWGLWHKLIQKPYEEGDERGLKLVQSILKPIMLRRTKSSTDRDGRPILVLPPANVEVHYCEMSAAEKDFYEALFRRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQ 748
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86170.20083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C8ZY55_OPUST5.540e-5150.66Helicase ATP-binding domain-containing protein (Fr... [more]
UPI001FB06E7A6.950e-4953.29DNA repair protein RAD5A isoform X1 n=4 Tax=Impati... [more]
A0A5A8D5B7_CAFRO1.790e-4852.05Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CW93_CAFRO2.170e-4852.05Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CAC5_CAFRO3.400e-4852.05Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
UPI00126308308.500e-4851.32DNA repair protein RAD5A isoform X1 n=3 Tax=Pistac... [more]
A0A6J0PEI4_ELAGV9.420e-4851.97DNA repair protein RAD5A isoform X3 n=1 Tax=Elaeis... [more]
UPI00053FB0FE1.160e-4750.66putative SWI/SNF-related matrix-associated actin-d... [more]
UPI0010A469F51.170e-4751.97DNA repair protein RAD5A n=1 Tax=Prosopis alba Tax... [more]
A0A6I9QMJ6_ELAGV2.160e-4751.97DNA repair protein RAD5A isoform X1 n=3 Tax=Cocose... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86170contigM-pyrifera_M_contig86170:5..469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score178.3
Seed ortholog evalue2.7e-42
Seed eggNOG ortholog161934.XP_010689983.1
KEGG koko:K15505
Hectar predicted targeting categoryother localisation
GOsGO:0000724,GO:0000725,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009292,GO:0009294,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044764,GO:0045003,GO:0046483,GO:0050896,GO:0051704,GO:0051716,GO:0071704,GO:0090304,GO:1901360
EggNOG free text desc.SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
EggNOG OGs37IVF@33090,3GE5V@35493,COG0553@1,KOG1001@2759
COG Functional cat.KL
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.3251228-CDS-M-pyrifera_M_contig86170:4..4691622816772.3251228-CDS-M-pyrifera_M_contig86170:4..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86170 5..469 +
1692278169.5148954-CDS-M-pyrifera_M_contig86170:4..4691692278169.5148954-CDS-M-pyrifera_M_contig86170:4..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86170 5..469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86170.20083.1prot_M-pyrifera_M_contig86170.20083.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86170 5..469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86170.20083.1

>prot_M-pyrifera_M_contig86170.20083.1 ID=prot_M-pyrifera_M_contig86170.20083.1|Name=mRNA_M-pyrifera_M_contig86170.20083.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
DHRWCLTGTPLHNGIGDIHTLLRFLQHDPWADQAWWRKMVSDPFDQGDPS
AMPLLQAILHPILLRRTKAMAGEDGKPIVALPPRRVRTKVISMDPLESRF
YRALFRHSKREFDGLVAQGRLSHSYTVILTLLLRLRQACDHPRLALGVGK
TERDA
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mRNA from alignment at M-pyrifera_M_contig86170:5..469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86170.20083.1 ID=mRNA_M-pyrifera_M_contig86170.20083.1|Name=mRNA_M-pyrifera_M_contig86170.20083.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig86170:5..469+ (Macrocystis pyrifera P11B4 male)
GATCATCGATGGTGTTTGACAGGAACACCTTTGCATAATGGGATTGGTGA
TATTCACACCCTTCTTCGTTTCTTGCAACATGACCCATGGGCTGATCAAG
CATGGTGGAGGAAAATGGTATCTGACCCATTTGATCAAGGTGATCCGTCA
GCAATGCCACTCTTGCAAGCAATTCTTCATCCTATTCTCCTTCGTCGTAC
CAAAGCAATGGCTGGAGAAGATGGGAAGCCAATCGTAGCATTGCCACCAC
GTCGTGTTCGAACCAAAGTCATTTCCATGGATCCATTGGAGAGTAGATTT
TATCGTGCACTTTTTCGTCATTCCAAACGAGAATTCGATGGATTGGTTGC
ACAAGGACGTCTCTCTCACAGTTACACTGTGATTCTTACACTTCTTCTCC
GACTTCGACAAGCATGTGACCATCCACGACTTGCACTCGGTGTTGGAAAA
ACCGAACGAGATGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86170:5..469+

>mRNA_M-pyrifera_M_contig86170.20083.1 ID=mRNA_M-pyrifera_M_contig86170.20083.1|Name=mRNA_M-pyrifera_M_contig86170.20083.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig86170:5..469+ (Macrocystis pyrifera P11B4 male)
GATCATCGATGGTGTTTGACAGGAACACCTTTGCATAATGGGATTGGTGA
TATTCACACCCTTCTTCGTTTCTTGCAACATGACCCATGGGCTGATCAAG
CATGGTGGAGGAAAATGGTATCTGACCCATTTGATCAAGGTGATCCGTCA
GCAATGCCACTCTTGCAAGCAATTCTTCATCCTATTCTCCTTCGTCGTAC
CAAAGCAATGGCTGGAGAAGATGGGAAGCCAATCGTAGCATTGCCACCAC
GTCGTGTTCGAACCAAAGTCATTTCCATGGATCCATTGGAGAGTAGATTT
TATCGTGCACTTTTTCGTCATTCCAAACGAGAATTCGATGGATTGGTTGC
ACAAGGACGTCTCTCTCACAGTTACACTGTGATTCTTACACTTCTTCTCC
GACTTCGACAAGCATGTGACCATCCACGACTTGCACTCGGTGTTGGAAAA
ACCGAACGAGATGCAGATCATCGATGGTGTTTGACAGGAACACCTTTGCA
TAATGGGATTGGTGATATTCACACCCTTCTTCGTTTCTTGCAACATGACC
CATGGGCTGATCAAGCATGGTGGAGGAAAATGGTATCTGACCCATTTGAT
CAAGGTGATCCGTCAGCAATGCCACTCTTGCAAGCAATTCTTCATCCTAT
TCTCCTTCGTCGTACCAAAGCAATGGCTGGAGAAGATGGGAAGCCAATCG
TAGCATTGCCACCACGTCGTGTTCGAACCAAAGTCATTTCCATGGATCCA
TTGGAGAGTAGATTTTATCGTGCACTTTTTCGTCATTCCAAACGAGAATT
CGATGGATTGGTTGCACAAGGACGTCTCTCTCACAGTTACACTGTGATTC
TTACACTTCTTCTCCGACTTCGACAAGCATGTGACCATCCACGACTTGCA
CTCGGTGTTGGAAAAACCGAACGAGATGCA
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