mRNA_M-pyrifera_M_contig86143.20075.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86143.20075.1
Unique NamemRNA_M-pyrifera_M_contig86143.20075.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86143.20075.1 vs. uniprot
Match: D7G6H3_ECTSI (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H3_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.170e-30
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1
Query:    1 LFRVDRVVFGAPNPNLGACGGWVDLPGHKHAFHELEVRGGVLAEDCALPLRRFFRSRRREG 183
            LFRVDRVVFGAPNPNLGACGGWVDL   +HAFHELEV+GGVLAE+CALPLR FFRSRRREG
Sbjct:  431 LFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREG 491          
BLAST of mRNA_M-pyrifera_M_contig86143.20075.1 vs. uniprot
Match: A0A6H5L744_9PHAE (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L744_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 9.070e-30
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 LFRVDRVVFGAPNPNLGACGGWVDLPGHKHAFHELEVRGGVLAEDCALPLRRFFRSRRRE 180
            LFRVDRVVFGAPNPNLGACGGWVDL   +HAFHELEV+GGVLAE+CALPLR FFRSRRRE
Sbjct:  403 LFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRRE 462          
BLAST of mRNA_M-pyrifera_M_contig86143.20075.1 vs. uniprot
Match: A0A7S3Y7A9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7A9_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 3.660e-16
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    4 FRVDRVVFGAPNPNLGACGGWVDLPGHKHAFHELEVRGGVLAEDCALPLRRFFRSRR 174
            FRV RVV+GA +  LGACG ++DLP H+H FH+L+V GGVLAE+ +  L++FFR RR
Sbjct:  101 FRVRRVVYGARDHRLGACGTYLDLPAHRHPFHQLQVTGGVLAEESSDLLKQFFRERR 157          
BLAST of mRNA_M-pyrifera_M_contig86143.20075.1 vs. uniprot
Match: A0A2V3J170_9FLOR (tRNA-specific adenosine deaminase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J170_9FLOR)

HSP 1 Score: 71.6 bits (174), Expect = 7.240e-14
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 LFRVDRVVFGAPNPNLGACGGWVDLPGHKHAFHEL-EVRGGVLAEDCALPLRRFFRSRRR 177
            L R+ RVVFGA +  LGACG WVDL   KH FH L EV GGVLAE  A  LR FF+ RRR
Sbjct:  129 LARIRRVVFGARDLRLGACGTWVDLVNEKHPFHTLDEVVGGVLAEQSAALLRSFFQERRR 188          
BLAST of mRNA_M-pyrifera_M_contig86143.20075.1 vs. uniprot
Match: A0A0U5BVA6_9GAMM (tRNA-specific adenosine deaminase n=1 Tax=Thiocapsa sp. KS1 TaxID=610332 RepID=A0A0U5BVA6_9GAMM)

HSP 1 Score: 68.6 bits (166), Expect = 3.440e-13
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    7 RVDRVVFGAPNPNLGACGGWVDL-PGHKHAFHELEVRGGVLAEDCALPLRRFFRSRR 174
            RVDRV++GAP+P  GACG   +L P +    H  + RGG+LAEDCA  LR FFR+RR
Sbjct:   87 RVDRVIYGAPDPKAGACGSVFELLPSNSRFNHRTDCRGGILAEDCAEILRAFFRARR 143          
BLAST of mRNA_M-pyrifera_M_contig86143.20075.1 vs. uniprot
Match: UPI00199862B7 (tRNA-specific adenosine deaminase n=2 Tax=Pigmentiphaga litoralis TaxID=516702 RepID=UPI00199862B7)

HSP 1 Score: 69.7 bits (169), Expect = 4.500e-13
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    7 RVDRVVFGAPNPNLGACGGWVDLPGHKHAFHELEVRGGVLAEDCALPLRRFFRSRR 174
            R+ RVVFGAP+P  G CGG +DLP      H+  V GGVLA +CA  LR FFR+RR
Sbjct:  109 RLARVVFGAPDPKTGVCGGTIDLPAVAQLNHQTVVEGGVLAAECAALLRAFFRARR 164          
BLAST of mRNA_M-pyrifera_M_contig86143.20075.1 vs. uniprot
Match: A0A853H1G2_9BURK (tRNA-specific adenosine deaminase n=1 Tax=Pusillimonas harenae TaxID=657015 RepID=A0A853H1G2_9BURK)

HSP 1 Score: 67.4 bits (163), Expect = 1.180e-12
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    7 RVDRVVFGAPNPNLGACGGWVDLPGHKHAFHELEVRGGVLAEDCALPLRRFFRSRR 174
            R+DRVVFGA +P  GACG  + + G     H+ +V GGVLAE+CA  LRRFFR RR
Sbjct:   88 RLDRVVFGATDPKTGACGSVLSVHGIVQLNHQTKVEGGVLAEECAELLRRFFRERR 143          
BLAST of mRNA_M-pyrifera_M_contig86143.20075.1 vs. uniprot
Match: A0A5C0B810_9BURK (tRNA-specific adenosine deaminase n=1 Tax=Pigmentiphaga aceris TaxID=1940612 RepID=A0A5C0B810_9BURK)

HSP 1 Score: 67.4 bits (163), Expect = 1.280e-12
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    7 RVDRVVFGAPNPNLGACGGWVDLPGHKHAFHELEVRGGVLAEDCALPLRRFFRSRRREG 183
            R+ RVV+GAP+P  GACGG +DLP      H+  V GGVLA++C   LR FFR RR++ 
Sbjct:   88 RLARVVYGAPDPKTGACGGVIDLPAVGTLNHQTTVVGGVLADECGELLRAFFRERRQQS 146          
BLAST of mRNA_M-pyrifera_M_contig86143.20075.1 vs. uniprot
Match: A0A7Y9IVQ4_9BURK (tRNA-specific adenosine deaminase n=2 Tax=Pigmentiphaga litoralis TaxID=516702 RepID=A0A7Y9IVQ4_9BURK)

HSP 1 Score: 68.6 bits (166), Expect = 1.870e-12
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    7 RVDRVVFGAPNPNLGACGGWVDLPGHKHAFHELEVRGGVLAEDCALPLRRFFRSRR 174
            R+ RVVFGAP+P  G CGG +DLP      H+  V GGVLA +CA  LR FFR+RR
Sbjct:  152 RLARVVFGAPDPKTGVCGGTIDLPAVAQLNHQTVVEGGVLAAECADLLRAFFRARR 207          
BLAST of mRNA_M-pyrifera_M_contig86143.20075.1 vs. uniprot
Match: E7RVG2_9BURK (tRNA-specific adenosine deaminase n=3 Tax=Lautropia TaxID=47670 RepID=E7RVG2_9BURK)

HSP 1 Score: 67.4 bits (163), Expect = 3.130e-12
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    7 RVDRVVFGAPNPNLGACGGWVDLPGHKHAFHELEVRGGVLAEDCALPLRRFFRSRR 174
            R+ RVVFGAP+P  G CGG +DLP      H+  V+GG+LA++C   L+RFF  RR
Sbjct:  111 RISRVVFGAPDPKTGVCGGVLDLPAEGRLNHQTVVQGGLLADECGKLLQRFFAERR 166          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86143.20075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6H3_ECTSI1.170e-3088.52CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A6H5L744_9PHAE9.070e-3088.33CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7S3Y7A9_HETAK3.660e-1659.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2V3J170_9FLOR7.240e-1463.33tRNA-specific adenosine deaminase n=1 Tax=Gracilar... [more]
A0A0U5BVA6_9GAMM3.440e-1356.14tRNA-specific adenosine deaminase n=1 Tax=Thiocaps... [more]
UPI00199862B74.500e-1357.14tRNA-specific adenosine deaminase n=2 Tax=Pigmenti... [more]
A0A853H1G2_9BURK1.180e-1257.14tRNA-specific adenosine deaminase n=1 Tax=Pusillim... [more]
A0A5C0B810_9BURK1.280e-1252.54tRNA-specific adenosine deaminase n=1 Tax=Pigmenti... [more]
A0A7Y9IVQ4_9BURK1.870e-1257.14tRNA-specific adenosine deaminase n=2 Tax=Pigmenti... [more]
E7RVG2_9BURK3.130e-1251.79tRNA-specific adenosine deaminase n=3 Tax=Lautropi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86143contigM-pyrifera_M_contig86143:246..428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.5e-25
Seed eggNOG ortholog2880.D7G6H3
KEGG rclassRC00477
KEGG koko:K11991,ko:K12193,ko:K15441
KEGG ReactionR10223
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
EggNOG free text desc.deaminase activity
EggNOG OGsCOG0590@1,KOG1018@2759
EC3.5.4.33
COG Functional cat.FJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko04131,ko04147
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.9241729-CDS-M-pyrifera_M_contig86143:245..4281622816771.9241729-CDS-M-pyrifera_M_contig86143:245..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86143 246..428 +
1692278169.294305-CDS-M-pyrifera_M_contig86143:245..4281692278169.294305-CDS-M-pyrifera_M_contig86143:245..428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86143 246..428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86143.20075.1prot_M-pyrifera_M_contig86143.20075.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86143 246..428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86143.20075.1

>prot_M-pyrifera_M_contig86143.20075.1 ID=prot_M-pyrifera_M_contig86143.20075.1|Name=mRNA_M-pyrifera_M_contig86143.20075.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
LFRVDRVVFGAPNPNLGACGGWVDLPGHKHAFHELEVRGGVLAEDCALPL
RRFFRSRRREG
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mRNA from alignment at M-pyrifera_M_contig86143:246..428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86143.20075.1 ID=mRNA_M-pyrifera_M_contig86143.20075.1|Name=mRNA_M-pyrifera_M_contig86143.20075.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig86143:246..428+ (Macrocystis pyrifera P11B4 male)
CTTTTCCGCGTGGACAGAGTCGTTTTCGGCGCCCCGAACCCGAACCTCGG TGCTTGCGGAGGCTGGGTAGACCTGCCCGGGCACAAACACGCCTTCCACG AGCTGGAGGTACGGGGAGGCGTTCTCGCGGAGGATTGCGCGCTGCCCCTG CGCCGCTTTTTTCGGTCTCGAAGGCGAGAAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86143:246..428+

>mRNA_M-pyrifera_M_contig86143.20075.1 ID=mRNA_M-pyrifera_M_contig86143.20075.1|Name=mRNA_M-pyrifera_M_contig86143.20075.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig86143:246..428+ (Macrocystis pyrifera P11B4 male)
CTTTTCCGCGTGGACAGAGTCGTTTTCGGCGCCCCGAACCCGAACCTCGG
TGCTTGCGGAGGCTGGGTAGACCTGCCCGGGCACAAACACGCCTTCCACG
AGCTGGAGGTACGGGGAGGCGTTCTCGCGGAGGATTGCGCGCTGCCCCTG
CGCCGCTTTTTTCGGTCTCGAAGGCGAGAAGGGCTTTTCCGCGTGGACAG
AGTCGTTTTCGGCGCCCCGAACCCGAACCTCGGTGCTTGCGGAGGCTGGG
TAGACCTGCCCGGGCACAAACACGCCTTCCACGAGCTGGAGGTACGGGGA
GGCGTTCTCGCGGAGGATTGCGCGCTGCCCCTGCGCCGCTTTTTTCGGTC
TCGAAGGCGAGAAGGG
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