mRNA_M-pyrifera_M_contig86117.20073.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86117.20073.1
Unique NamemRNA_M-pyrifera_M_contig86117.20073.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86117.20073.1 vs. uniprot
Match: A0A2N0DM69_9PSED (RING-type E3 ubiquitin transferase n=3 Tax=Pseudomonas TaxID=286 RepID=A0A2N0DM69_9PSED)

HSP 1 Score: 53.5 bits (127), Expect = 1.120e-5
Identity = 44/122 (36.07%), Postives = 65/122 (53.28%), Query Frame = 1 
Query:   16 GLEVLVLSFNHLSHLPD-LSSLPSLRRLSASHNRLTSLSFPLEKVPGEMGRLGDIKTLQWLDVGHNYVSSLLPLSGSSSLETLWCQNNRLSDAKGVLRVLETLPSLRGLVVESNPFLTLQNI 378
            G+  L L+ N L+ LP+ +++LP+LRRLSASHNRL++        P     L  +  LQ LD+  N++  L  +S  + LE L    NRL    G +    TLP+LR L +  N   T+  +
Sbjct: 1883 GVHTLELNGNQLTMLPEPVTALPALRRLSASHNRLSAS-------PALQTHLSALTHLQSLDLSQNWLEEL-DVSALTGLERLVLHGNRLVYWPGGVL---TLPALRALDLRDNMIETIPQV 1993
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86117.20073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2N0DM69_9PSED1.120e-536.07RING-type E3 ubiquitin transferase n=3 Tax=Pseudom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86117contigM-pyrifera_M_contig86117:271..648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.8435822-UTR-M-pyrifera_M_contig86117:270..2791622816771.8435822-UTR-M-pyrifera_M_contig86117:270..279Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86117 271..279 +
1692278169.2509446-UTR-M-pyrifera_M_contig86117:270..2791692278169.2509446-UTR-M-pyrifera_M_contig86117:270..279Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86117 271..279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.854571-CDS-M-pyrifera_M_contig86117:279..6481622816771.854571-CDS-M-pyrifera_M_contig86117:279..648Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86117 280..648 +
1692278169.2679656-CDS-M-pyrifera_M_contig86117:279..6481692278169.2679656-CDS-M-pyrifera_M_contig86117:279..648Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86117 280..648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86117.20073.1prot_M-pyrifera_M_contig86117.20073.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86117 280..648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86117.20073.1

>prot_M-pyrifera_M_contig86117.20073.1 ID=prot_M-pyrifera_M_contig86117.20073.1|Name=mRNA_M-pyrifera_M_contig86117.20073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
MPGLEVLVLSFNHLSHLPDLSSLPSLRRLSASHNRLTSLSFPLEKVPGEM
GRLGDIKTLQWLDVGHNYVSSLLPLSGSSSLETLWCQNNRLSDAKGVLRV
LETLPSLRGLVVESNPFLTLQNI
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mRNA from alignment at M-pyrifera_M_contig86117:271..648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86117.20073.1 ID=mRNA_M-pyrifera_M_contig86117.20073.1|Name=mRNA_M-pyrifera_M_contig86117.20073.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig86117:271..648+ (Macrocystis pyrifera P11B4 male)
CTGTTTTGCATGCCTGGGTTGGAAGTTTTGGTACTTTCCTTCAATCATCT
TTCACACCTTCCTGACTTGTCATCTCTTCCATCTTTGAGACGCCTTAGTG
CATCGCACAACCGACTTACATCGTTGTCGTTTCCTTTGGAGAAGGTTCCT
GGGGAGATGGGGAGGCTAGGGGATATAAAGACACTACAGTGGTTGGATGT
GGGGCATAATTATGTGTCTTCGTTGTTGCCGTTGTCTGGAAGTTCGTCTC
TGGAGACATTATGGTGCCAAAATAATCGTTTGTCAGATGCGAAGGGTGTA
TTGCGTGTTTTGGAGACATTACCGTCCCTTCGTGGTCTTGTGGTAGAATC
CAACCCTTTTCTCACACTGCAAAACATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86117:271..648+

>mRNA_M-pyrifera_M_contig86117.20073.1 ID=mRNA_M-pyrifera_M_contig86117.20073.1|Name=mRNA_M-pyrifera_M_contig86117.20073.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig86117:271..648+ (Macrocystis pyrifera P11B4 male)
ATGCCTGGGTTGGAAGTTTTGGTACTTTCCTTCAATCATCTTTCACACCT
TCCTGACTTGTCATCTCTTCCATCTTTGAGACGCCTTAGTGCATCGCACA
ACCGACTTACATCGTTGTCGTTTCCTTTGGAGAAGGTTCCTGGGGAGATG
GGGAGGCTAGGGGATATAAAGACACTACAGTGGTTGGATGTGGGGCATAA
TTATGTGTCTTCGTTGTTGCCGTTGTCTGGAAGTTCGTCTCTGGAGACAT
TATGGTGCCAAAATAATCGTTTGTCAGATGCGAAGGGTGTATTGCGTGTT
TTGGAGACATTACCGTCCCTTCGTGGTCTTGTGGTAGAATCCAACCCTTT
TCTCACACTGCAAAACATCATGCCTGGGTTGGAAGTTTTGGTACTTTCCT
TCAATCATCTTTCACACCTTCCTGACTTGTCATCTCTTCCATCTTTGAGA
CGCCTTAGTGCATCGCACAACCGACTTACATCGTTGTCGTTTCCTTTGGA
GAAGGTTCCTGGGGAGATGGGGAGGCTAGGGGATATAAAGACACTACAGT
GGTTGGATGTGGGGCATAATTATGTGTCTTCGTTGTTGCCGTTGTCTGGA
AGTTCGTCTCTGGAGACATTATGGTGCCAAAATAATCGTTTGTCAGATGC
GAAGGGTGTATTGCGTGTTTTGGAGACATTACCGTCCCTTCGTGGTCTTG
TGGTAGAATCCAACCCTTTTCTCACACTGCAAAACATC
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