mRNA_M-pyrifera_M_contig86064.20060.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86064.20060.1
Unique NamemRNA_M-pyrifera_M_contig86064.20060.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86064.20060.1 vs. uniprot
Match: A0A2G9H4R2_9LAMI (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H4R2_9LAMI)

HSP 1 Score: 50.4 bits (119), Expect = 4.860e-5
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:   28 LTFVDQYNAVCGG-GGGVGAVATEAPWLLSRLFHDPTGI-RSIVCSSYAFFFLAPIVSSLAYAFLPVDLIPDASLPFLGFIDDIIVIIVALVIMAGVYRAWVVEQ 336
            L  + +YN + G    G+     + P+LL RL  D     RS+        +LA I S+L Y   PVD+IP+A L  LGF+DD+I+I +  + +A +YRA +V +
Sbjct:   78 LQGIQRYNRLYGERSNGLFQRMQDLPFLLKRLLRDIMDPQRSLPLVLRTRVYLAVIGSAL-YVISPVDIIPEALLGILGFVDDLIIIFICFLHVAALYRAVLVSR 181
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86064.20060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2G9H4R2_9LAMI4.860e-536.19E3 ubiquitin-protein ligase RNF170 n=1 Tax=Handroa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86064contigM-pyrifera_M_contig86064:475..837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.2236788-CDS-M-pyrifera_M_contig86064:474..8371622816771.2236788-CDS-M-pyrifera_M_contig86064:474..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86064 475..837 -
1692278168.805574-CDS-M-pyrifera_M_contig86064:474..8371692278168.805574-CDS-M-pyrifera_M_contig86064:474..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86064 475..837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86064.20060.1prot_M-pyrifera_M_contig86064.20060.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86064 475..837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86064.20060.1

>prot_M-pyrifera_M_contig86064.20060.1 ID=prot_M-pyrifera_M_contig86064.20060.1|Name=mRNA_M-pyrifera_M_contig86064.20060.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
SSPSPAPSTLTFVDQYNAVCGGGGGVGAVATEAPWLLSRLFHDPTGIRSI
VCSSYAFFFLAPIVSSLAYAFLPVDLIPDASLPFLGFIDDIIVIIVALVI
MAGVYRAWVVEQARLRLVGE*
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mRNA from alignment at M-pyrifera_M_contig86064:475..837-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86064.20060.1 ID=mRNA_M-pyrifera_M_contig86064.20060.1|Name=mRNA_M-pyrifera_M_contig86064.20060.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig86064:475..837- (Macrocystis pyrifera P11B4 male)
TCAAGTCCATCCCCTGCCCCTTCTACTTTAACCTTCGTGGATCAATACAA
TGCAGTTTGCGGTGGTGGTGGTGGTGTAGGTGCTGTTGCTACTGAAGCAC
CATGGCTTCTTTCTCGACTTTTCCATGATCCAACTGGGATTCGATCCATC
GTTTGTTCCTCCTATGCATTCTTCTTCCTCGCTCCGATTGTGTCTTCCCT
TGCATATGCCTTCCTTCCAGTTGACCTCATCCCTGATGCCTCCCTCCCTT
TCCTTGGATTCATTGACGACATCATCGTCATCATTGTTGCCCTCGTCATC
ATGGCAGGGGTGTATAGAGCATGGGTTGTGGAACAAGCAAGGCTACGCCT
TGTAGGTGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86064:475..837-

>mRNA_M-pyrifera_M_contig86064.20060.1 ID=mRNA_M-pyrifera_M_contig86064.20060.1|Name=mRNA_M-pyrifera_M_contig86064.20060.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig86064:475..837- (Macrocystis pyrifera P11B4 male)
TCAAGTCCATCCCCTGCCCCTTCTACTTTAACCTTCGTGGATCAATACAA
TGCAGTTTGCGGTGGTGGTGGTGGTGTAGGTGCTGTTGCTACTGAAGCAC
CATGGCTTCTTTCTCGACTTTTCCATGATCCAACTGGGATTCGATCCATC
GTTTGTTCCTCCTATGCATTCTTCTTCCTCGCTCCGATTGTGTCTTCCCT
TGCATATGCCTTCCTTCCAGTTGACCTCATCCCTGATGCCTCCCTCCCTT
TCCTTGGATTCATTGACGACATCATCGTCATCATTGTTGCCCTCGTCATC
ATGGCAGGGGTGTATAGAGCATGGGTTGTGGAACAAGCAAGGCTACGCCT
TGTAGGTGAATGATCAAGTCCATCCCCTGCCCCTTCTACTTTAACCTTCG
TGGATCAATACAATGCAGTTTGCGGTGGTGGTGGTGGTGTAGGTGCTGTT
GCTACTGAAGCACCATGGCTTCTTTCTCGACTTTTCCATGATCCAACTGG
GATTCGATCCATCGTTTGTTCCTCCTATGCATTCTTCTTCCTCGCTCCGA
TTGTGTCTTCCCTTGCATATGCCTTCCTTCCAGTTGACCTCATCCCTGAT
GCCTCCCTCCCTTTCCTTGGATTCATTGACGACATCATCGTCATCATTGT
TGCCCTCGTCATCATGGCAGGGGTGTATAGAGCATGGGTTGTGGAACAAG
CAAGGCTACGCCTTGTAGGTGAATGA
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