mRNA_M-pyrifera_M_contig86051.20056.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86051.20056.1
Unique NamemRNA_M-pyrifera_M_contig86051.20056.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86051.20056.1 vs. uniprot
Match: A0A813A9X5_9DINO (Eif3l protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A9X5_9DINO)

HSP 1 Score: 62.8 bits (151), Expect = 5.780e-8
Identity = 42/150 (28.00%), Postives = 74/150 (49.33%), Query Frame = 1 
Query:    1 DLLDLYEADRRNLTTNYFSTKEWPSLAVAEASLHIRIPGREAISRRSGSVPREVFGMLYELLWFKHALLVLPSKESPAPVAVMEASFAAYERFCTFFLSLDSA----SSFALPAEWSYDVLNELVYICQLYHERRCAHA---VSGSEGAA 429
            D+L++YE   R ++  +F+   WP               RE +     +   + F +LY LL+FKH L+ LP+ E+PA  +    ++  Y  F  F L    A    ++  LPA+W +++++E V+  + +H+RR   A   V+  +G A
Sbjct:   32 DILNMYEKGFRTISKEHFAESTWPE--------------REEVKELLDA--DDSFMVLYNLLYFKHLLVTLPTPENPARSSHYADAWDRYRDFFDFVLERVEAPPGGATLNLPAKWVFNIMDEFVWYYETFHKRRNERARALVAADDGDA 165
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BLAST of mRNA_M-pyrifera_M_contig86051.20056.1 vs. uniprot
Match: R1CDX2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CDX2_EMIHU)

HSP 1 Score: 58.9 bits (141), Expect = 1.000e-6
Identity = 50/168 (29.76%), Postives = 78/168 (46.43%), Query Frame = 1 
Query:   16 YEADRRNLTTNYFSTKEWPSLAVAEASLHIRIPGREAISRRSGSVPREVFGMLYELLWFKHALLVLPSKESPAPVAVMEASFAAYERFCTFFLSLDSASSFALPAEWSYDVLNELVYICQLYHERRCAHAVSGSEGAA---PRAELWSIPSVLSLLRRLFRESGVEAR 510
            YEA    LT   + T  WP+  V        + G +A            F +LY  L+F+H    L S+ +P     ++ S+A YE   +  L  D+ +  ALP +W +D+++EL+Y  Q +   R       +E  A    R ++WS+ SVL +L R+  E G E R
Sbjct:   72 YEATFNKLTDRLYKTSPWPTAEVVSP-----LVGGDA-----------TFLLLYRELYFRH----LYSRLTPTLQQRID-SWANYEALFSLLLDGDAPADLALPNQWIWDLVDELIYQFQAWSMFRQRLKSKSAEEIAILKQRTDVWSVTSVLGMLHRMA-ERGKEPR 217
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86051.20056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A813A9X5_9DINO5.780e-828.00Eif3l protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
R1CDX2_EMIHU1.000e-629.76Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86051contigM-pyrifera_M_contig86051:219..854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.9
Seed ortholog evalue2.6e-11
Seed eggNOG ortholog7918.ENSLOCP00000019965
Preferred nameEIF3L
KEGG koko:K15029
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016032,GO:0019080,GO:0019081,GO:0019538,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0051704,GO:0070013,GO:0071704,GO:0075525,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
EggNOG OGs38IDV@33154,3BB4F@33208,3CVXV@33213,486B9@7711,48VZ6@7742,4A11B@7898,KOG3677@1,KOG3677@2759
COG Functional cat.J
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons1
Model size636
Cds size636
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.0898955-CDS-M-pyrifera_M_contig86051:218..8541622816771.0898955-CDS-M-pyrifera_M_contig86051:218..854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86051 219..854 +
1692278168.7527106-CDS-M-pyrifera_M_contig86051:218..8541692278168.7527106-CDS-M-pyrifera_M_contig86051:218..854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86051 219..854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86051.20056.1prot_M-pyrifera_M_contig86051.20056.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86051 219..854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86051.20056.1

>prot_M-pyrifera_M_contig86051.20056.1 ID=prot_M-pyrifera_M_contig86051.20056.1|Name=mRNA_M-pyrifera_M_contig86051.20056.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=212bp
DLLDLYEADRRNLTTNYFSTKEWPSLAVAEASLHIRIPGREAISRRSGSV
PREVFGMLYELLWFKHALLVLPSKESPAPVAVMEASFAAYERFCTFFLSL
DSASSFALPAEWSYDVLNELVYICQLYHERRCAHAVSGSEGAAPRAELWS
IPSVLSLLRRLFRESGVEARLKEAGSASGSGGSGGASVAEATTQVGYFAL
ACYIRLQTKLCD
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mRNA from alignment at M-pyrifera_M_contig86051:219..854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86051.20056.1 ID=mRNA_M-pyrifera_M_contig86051.20056.1|Name=mRNA_M-pyrifera_M_contig86051.20056.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig86051:219..854+ (Macrocystis pyrifera P11B4 male)
GATTTGCTCGACTTGTACGAAGCGGATCGACGCAACTTGACCACCAATTA
CTTTAGCACAAAGGAGTGGCCATCTTTGGCTGTGGCAGAAGCGTCACTGC
ACATTCGTATCCCAGGAAGAGAAGCCATTTCTCGTCGTTCCGGCTCTGTG
CCTCGTGAGGTGTTTGGAATGCTGTACGAATTGCTGTGGTTTAAGCATGC
TTTGCTTGTGCTTCCATCGAAAGAGTCTCCAGCTCCAGTTGCGGTGATGG
AGGCGAGTTTTGCGGCATATGAACGGTTTTGCACCTTTTTCCTCTCTCTG
GACAGTGCATCCAGCTTTGCACTCCCAGCAGAGTGGAGCTACGATGTGTT
GAATGAGCTTGTGTACATTTGTCAACTGTACCATGAGCGCAGGTGCGCAC
ATGCAGTGTCTGGCAGTGAAGGAGCTGCGCCACGCGCCGAGTTGTGGTCG
ATTCCTTCTGTTTTGTCCCTCTTGCGTCGCTTGTTCCGCGAGTCTGGTGT
GGAGGCGCGCTTGAAGGAAGCAGGGTCTGCAAGTGGGAGTGGTGGGAGTG
GAGGAGCAAGTGTTGCAGAAGCGACAACGCAAGTTGGGTACTTTGCGTTG
GCGTGCTACATTCGGTTGCAAACCAAGTTGTGCGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86051:219..854+

>mRNA_M-pyrifera_M_contig86051.20056.1 ID=mRNA_M-pyrifera_M_contig86051.20056.1|Name=mRNA_M-pyrifera_M_contig86051.20056.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1272bp|location=Sequence derived from alignment at M-pyrifera_M_contig86051:219..854+ (Macrocystis pyrifera P11B4 male)
GATTTGCTCGACTTGTACGAAGCGGATCGACGCAACTTGACCACCAATTA
CTTTAGCACAAAGGAGTGGCCATCTTTGGCTGTGGCAGAAGCGTCACTGC
ACATTCGTATCCCAGGAAGAGAAGCCATTTCTCGTCGTTCCGGCTCTGTG
CCTCGTGAGGTGTTTGGAATGCTGTACGAATTGCTGTGGTTTAAGCATGC
TTTGCTTGTGCTTCCATCGAAAGAGTCTCCAGCTCCAGTTGCGGTGATGG
AGGCGAGTTTTGCGGCATATGAACGGTTTTGCACCTTTTTCCTCTCTCTG
GACAGTGCATCCAGCTTTGCACTCCCAGCAGAGTGGAGCTACGATGTGTT
GAATGAGCTTGTGTACATTTGTCAACTGTACCATGAGCGCAGGTGCGCAC
ATGCAGTGTCTGGCAGTGAAGGAGCTGCGCCACGCGCCGAGTTGTGGTCG
ATTCCTTCTGTTTTGTCCCTCTTGCGTCGCTTGTTCCGCGAGTCTGGTGT
GGAGGCGCGCTTGAAGGAAGCAGGGTCTGCAAGTGGGAGTGGTGGGAGTG
GAGGAGCAAGTGTTGCAGAAGCGACAACGCAAGTTGGGTACTTTGCGTTG
GCGTGCTACATTCGGTTGCAAACCAAGTTGTGCGATGATTTGCTCGACTT
GTACGAAGCGGATCGACGCAACTTGACCACCAATTACTTTAGCACAAAGG
AGTGGCCATCTTTGGCTGTGGCAGAAGCGTCACTGCACATTCGTATCCCA
GGAAGAGAAGCCATTTCTCGTCGTTCCGGCTCTGTGCCTCGTGAGGTGTT
TGGAATGCTGTACGAATTGCTGTGGTTTAAGCATGCTTTGCTTGTGCTTC
CATCGAAAGAGTCTCCAGCTCCAGTTGCGGTGATGGAGGCGAGTTTTGCG
GCATATGAACGGTTTTGCACCTTTTTCCTCTCTCTGGACAGTGCATCCAG
CTTTGCACTCCCAGCAGAGTGGAGCTACGATGTGTTGAATGAGCTTGTGT
ACATTTGTCAACTGTACCATGAGCGCAGGTGCGCACATGCAGTGTCTGGC
AGTGAAGGAGCTGCGCCACGCGCCGAGTTGTGGTCGATTCCTTCTGTTTT
GTCCCTCTTGCGTCGCTTGTTCCGCGAGTCTGGTGTGGAGGCGCGCTTGA
AGGAAGCAGGGTCTGCAAGTGGGAGTGGTGGGAGTGGAGGAGCAAGTGTT
GCAGAAGCGACAACGCAAGTTGGGTACTTTGCGTTGGCGTGCTACATTCG
GTTGCAAACCAAGTTGTGCGAT
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