mRNA_M-pyrifera_M_contig86039.20049.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86039.20049.1
Unique NamemRNA_M-pyrifera_M_contig86039.20049.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86039.20049.1 vs. uniprot
Match: A0A367JSH7_RHIST (RRM domain-containing protein (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367JSH7_RHIST)

HSP 1 Score: 147 bits (372), Expect = 6.160e-43
Identity = 71/131 (54.20%), Postives = 98/131 (74.81%), Query Frame = 1 
Query:   13 EEKRAAKAAR--------GVVYVGRLPYGFFERELRGYFSQFGELTRLRLSRNKKPGKSKHYAFLEFRDPDVAEIVAETMDGYLLYRHILQCSVVAPARVHPRLFRGANRRFVPAQQRAAARILRNAVRSP 381
            ++K+AAK+A+        GV+Y+GR+P+GF+E+E+RGYFSQFG++TRLRLSRNKK GK KHYAF+EF+  +VAEIVAETMD YLL+ H+L+C VV P +VH +LF G+N  + P       R + N  ++P
Sbjct:    4 DKKKAAKSAKSTKAEEEKGVIYLGRIPHGFYEKEMRGYFSQFGDITRLRLSRNKKTGKPKHYAFIEFQSREVAEIVAETMDNYLLFSHMLKCQVVPPEKVHEKLFNGSNAVYKPFNYELRNRQIHNKRKTP 134
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BLAST of mRNA_M-pyrifera_M_contig86039.20049.1 vs. uniprot
Match: A0A4P9YU86_9FUNG (RRM domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YU86_9FUNG)

HSP 1 Score: 144 bits (364), Expect = 6.610e-42
Identity = 69/113 (61.06%), Postives = 87/113 (76.99%), Query Frame = 1 
Query:   43 GVVYVGRLPYGFFERELRGYFSQFGELTRLRLSRNKKPGKSKHYAFLEFRDPDVAEIVAETMDGYLLYRHILQCSVVAPARVHPRLFRGANRRFVPAQQRAAARILRNAVRSP 381
            GVVYVGR+P+GF+E E+RGYF QFG ++RLRLSRNKK G+SKHYAF+EF D DVA++VA+TM+ YLL+ H+L+C VV   +VH RLF GANR+F P      AR   N  R+P
Sbjct:    1 GVVYVGRIPHGFYEDEMRGYFGQFGTVSRLRLSRNKKTGRSKHYAFVEFADADVADVVADTMNNYLLFGHLLKCQVVPAHKVHARLFDGANRKFKPLPLHKMAREEHNRTRTP 113
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BLAST of mRNA_M-pyrifera_M_contig86039.20049.1 vs. uniprot
Match: S3BPH9_OPHP1 (Ribosomal biogenesis protein gar2 n=1 Tax=Ophiostoma piceae (strain UAMH 11346) TaxID=1262450 RepID=S3BPH9_OPHP1)

HSP 1 Score: 147 bits (371), Expect = 2.850e-41
Identity = 70/106 (66.04%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    7 AREEKRAAKAARGVVYVGRLPYGFFERELRGYFSQFGELTRLRLSRNKKPGKSKHYAFLEFRDPDVAEIVAETMDGYLLYRHILQCSVVAPARVHPRLFRGANRRF 324
            A+ ++ A +   G+VYVGR+P+GFFE E+R YFSQFG++ RLRLSRN+K G SKHYAF+EF D DVAEIVA+TMD YLL+ HIL+CSVVA  R+ P LF+GANRRF
Sbjct:   84 AQNDESAEEQYGGIVYVGRIPHGFFENEMRSYFSQFGDIRRLRLSRNRKTGASKHYAFIEFTDRDVAEIVAKTMDNYLLFGHILRCSVVASERIPPNLFKGANRRF 189
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BLAST of mRNA_M-pyrifera_M_contig86039.20049.1 vs. uniprot
Match: A0A2H3JJ57_WOLCO (RNA-binding domain-containing protein n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3JJ57_WOLCO)

HSP 1 Score: 144 bits (362), Expect = 4.490e-41
Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:   19 KRAAKAARGVVYVGRLPYGFFERELRGYFSQFGELTRLRLSRNKKPGKSKHYAFLEFRDPDVAEIVAETMDGYLLYRHILQCSVVAPARVHPRLFRGANRRFVPAQQRAAARILRNAVRSP 381
            KR     RGV+Y+GR+P+GF+E ++R YFSQFG +TRLRLSRNKK G+SKHYAF+EF    VA+IVAETMD YLL  HILQC V+   +VHP+L+ GANR++    Q   AR+  N  R+P
Sbjct:   31 KRQPTGDRGVIYLGRIPHGFYEDQMRSYFSQFGNVTRLRLSRNKKTGRSKHYAFIEFDSASVAQIVAETMDNYLLMGHILQCKVIPKDKVHPKLWVGANRKWRAVPQDRIARVQHNKKRTP 151
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BLAST of mRNA_M-pyrifera_M_contig86039.20049.1 vs. uniprot
Match: A0A5B1QF05_9AGAM (RNA-binding domain-containing protein n=1 Tax=Dentipellis sp. KUC8613 TaxID=1883078 RepID=A0A5B1QF05_9AGAM)

HSP 1 Score: 142 bits (358), Expect = 2.090e-40
Identity = 69/120 (57.50%), Postives = 88/120 (73.33%), Query Frame = 1 
Query:   19 KRAAKAARGVVYVGRLPYGFFERELRGYFSQFGELTRLRLSRNKKPGKSKHYAFLEFRDPDVAEIVAETMDGYLLYRHILQCSVVAPARVHPRLFRGANRRFVPAQQRAAARILRNAVRS 378
            KR     RGV+Y+GR+P+GF+E++++ YFSQFGE+TRLRLSRNKK G+SKHY F+EF    VA+IVAETMD YLL  HILQC V+    VHP L+ GANR++ P  Q   AR+  N  R+
Sbjct:   32 KRKPTEDRGVIYLGRIPHGFYEKQMKAYFSQFGEVTRLRLSRNKKTGRSKHYGFVEFDSSSVAQIVAETMDNYLLMGHILQCKVIPKDEVHPELWVGANRKWRPIPQGRIARVKHNKPRT 151
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BLAST of mRNA_M-pyrifera_M_contig86039.20049.1 vs. uniprot
Match: A0A8H5MG97_9AGAR (RRM domain-containing protein n=1 Tax=Gymnopus confluens TaxID=206315 RepID=A0A8H5MG97_9AGAR)

HSP 1 Score: 144 bits (364), Expect = 2.370e-40
Identity = 74/116 (63.79%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:   40 RGVVYVGRLPYGFFERELRGYFSQFGELTRLRLSRNKKPGKSKHYAFLEFRDPDVAEIVAETMDGYLLYRHILQCSVVAPARVHPRLFRGANR--RFVPAQQRAAARILRNAVRSP 381
            RGV+Y+GRLP+GF+E +L+GYFSQFG++TRLRLSRNKK GKSKHYAFLEF    VA+IVAETMD YLL  HIL+C ++    VHP L+ GANR  R VP QQ   AR+ +N  R+P
Sbjct:  126 RGVLYLGRLPHGFYEDQLKGYFSQFGDVTRLRLSRNKKTGKSKHYAFLEFESSSVAQIVAETMDNYLLMGHILRCKLIPKEEVHPELWIGANRKWRVVPRQQ--VARVAQNKPRTP 239
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BLAST of mRNA_M-pyrifera_M_contig86039.20049.1 vs. uniprot
Match: I2JYN4_DEKBR (Ribosomal biogenesis protein gar2 n=1 Tax=Brettanomyces bruxellensis AWRI1499 TaxID=1124627 RepID=I2JYN4_DEKBR)

HSP 1 Score: 142 bits (358), Expect = 3.200e-40
Identity = 65/104 (62.50%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:   13 EEKRAAKAARGVVYVGRLPYGFFERELRGYFSQFGELTRLRLSRNKKPGKSKHYAFLEFRDPDVAEIVAETMDGYLLYRHILQCSVVAPARVHPRLFRGANRRF 324
            E+K+  K  RGV+Y+GR+P+GF+E ELR YFSQFGE+TRLRLSRN+K G SKHY F+EF DP+VA I AETM+ YLL+ HIL+C+V+ P ++H  LF GAN +F
Sbjct:   62 EQKKFGK--RGVIYIGRIPHGFYEDELRKYFSQFGEITRLRLSRNRKTGNSKHYGFIEFSDPEVASIAAETMNNYLLFGHILKCAVIPPEKIHDELFNGANTKF 163
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BLAST of mRNA_M-pyrifera_M_contig86039.20049.1 vs. uniprot
Match: A0A2A9NY98_9AGAR (RRM domain-containing protein n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NY98_9AGAR)

HSP 1 Score: 143 bits (360), Expect = 5.830e-40
Identity = 73/126 (57.94%), Postives = 89/126 (70.63%), Query Frame = 1 
Query:    1 ARAREEKRAAKAARGVVYVGRLPYGFFERELRGYFSQFGELTRLRLSRNKKPGKSKHYAFLEFRDPDVAEIVAETMDGYLLYRHILQCSVVAPARVHPRLFRGANRRFVPAQQRAAARILRNAVRS 378
            A+  + KR      G++Y+GRLP+GFFE ELRGYFSQFG +TRLRLSRNKK GKSKHYAFLEF    VA+IVAETMD YL+  HILQC V+   +VHP L+ GANR++    +    RI  N  R+
Sbjct:   96 AKLEKAKRKPTEDHGMIYIGRLPHGFFEDELRGYFSQFGNVTRLRLSRNKKTGKSKHYAFLEFDSSSVAKIVAETMDNYLIMGHILQCKVIPKDKVHPELWVGANRKWKVVPRDRVTRIAHNKKRT 221
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BLAST of mRNA_M-pyrifera_M_contig86039.20049.1 vs. uniprot
Match: A0A8H6B828_DEKBR (RRM domain-containing protein n=3 Tax=Dekkera bruxellensis TaxID=5007 RepID=A0A8H6B828_DEKBR)

HSP 1 Score: 142 bits (358), Expect = 6.360e-40
Identity = 65/104 (62.50%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:   13 EEKRAAKAARGVVYVGRLPYGFFERELRGYFSQFGELTRLRLSRNKKPGKSKHYAFLEFRDPDVAEIVAETMDGYLLYRHILQCSVVAPARVHPRLFRGANRRF 324
            E+K+  K  RGV+Y+GR+P+GF+E ELR YFSQFGE+TRLRLSRN+K G SKHY F+EF DP+VA I AETM+ YLL+ HIL+C+V+ P ++H  LF GAN +F
Sbjct:  123 EQKKFGK--RGVIYIGRIPHGFYEDELRKYFSQFGEITRLRLSRNRKTGNSKHYGFIEFSDPEVASIAAETMNNYLLFGHILKCAVIPPEKIHDELFNGANTKF 224
[Close]
BLAST of mRNA_M-pyrifera_M_contig86039.20049.1 vs. uniprot
Match: A0A448YQS4_BRENA (DEKNAAC104358 n=1 Tax=Brettanomyces naardenensis TaxID=13370 RepID=A0A448YQS4_BRENA)

HSP 1 Score: 142 bits (359), Expect = 1.400e-39
Identity = 64/107 (59.81%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:   10 REEKRAAKAARGVVYVGRLPYGFFERELRGYFSQFGELTRLRLSRNKKPGKSKHYAFLEFRDPDVAEIVAETMDGYLLYRHILQCSVVAPARVHPRLFRGANRRFVP 330
            +++K +    +GV+YVGR+P+GF+E ELR YFSQFGE+TRLRLSRNKK G+SKHYAF+EF   +VA+I AETM+ YLL+ H+L+CSV+ P ++H  LF GAN +F P
Sbjct:  126 KKQKGSKNEKKGVIYVGRIPHGFYEAELRKYFSQFGEITRLRLSRNKKTGQSKHYAFIEFSSNEVAKIAAETMNNYLLFSHLLRCSVIPPEKIHDELFNGANTKFKP 232
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86039.20049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A367JSH7_RHIST6.160e-4354.20RRM domain-containing protein (Fragment) n=1 Tax=R... [more]
A0A4P9YU86_9FUNG6.610e-4261.06RRM domain-containing protein (Fragment) n=1 Tax=S... [more]
S3BPH9_OPHP12.850e-4166.04Ribosomal biogenesis protein gar2 n=1 Tax=Ophiosto... [more]
A0A2H3JJ57_WOLCO4.490e-4157.85RNA-binding domain-containing protein n=1 Tax=Wolf... [more]
A0A5B1QF05_9AGAM2.090e-4057.50RNA-binding domain-containing protein n=1 Tax=Dent... [more]
A0A8H5MG97_9AGAR2.370e-4063.79RRM domain-containing protein n=1 Tax=Gymnopus con... [more]
I2JYN4_DEKBR3.200e-4062.50Ribosomal biogenesis protein gar2 n=1 Tax=Brettano... [more]
A0A2A9NY98_9AGAR5.830e-4057.94RRM domain-containing protein n=1 Tax=Amanita thie... [more]
A0A8H6B828_DEKBR6.360e-4062.50RRM domain-containing protein n=3 Tax=Dekkera brux... [more]
A0A448YQS4_BRENA1.400e-3959.81DEKNAAC104358 n=1 Tax=Brettanomyces naardenensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86039contigM-pyrifera_M_contig86039:427..807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score148.7
Seed ortholog evalue1.9e-33
Seed eggNOG ortholog61273.S3BPH9
Preferred nameNOP15
KEGG koko:K14838
Hectar predicted targeting categoryother localisation
GOsGO:0000910,GO:0000912,GO:0000915,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006996,GO:0007010,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0019843,GO:0022402,GO:0022607,GO:0022613,GO:0030029,GO:0030036,GO:0030684,GO:0030687,GO:0030865,GO:0030866,GO:0031032,GO:0031974,GO:0031981,GO:0032506,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044837,GO:0051301,GO:0061640,GO:0070013,GO:0071840,GO:0097159,GO:1901363,GO:1990904
EggNOG free text desc.RNA recognition motif
EggNOG OGs2116A@147550,3A02H@33154,3P21Q@4751,3QUCV@4890,3UTM5@5151,KOG4208@1,KOG4208@2759
COG Functional cat.A
Best tax levelOphiostomatales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.751398-CDS-M-pyrifera_M_contig86039:426..8071622816770.751398-CDS-M-pyrifera_M_contig86039:426..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86039 427..807 +
1692278168.5603414-CDS-M-pyrifera_M_contig86039:426..8071692278168.5603414-CDS-M-pyrifera_M_contig86039:426..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86039 427..807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86039.20049.1prot_M-pyrifera_M_contig86039.20049.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86039 427..807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86039.20049.1

>prot_M-pyrifera_M_contig86039.20049.1 ID=prot_M-pyrifera_M_contig86039.20049.1|Name=mRNA_M-pyrifera_M_contig86039.20049.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
ARAREEKRAAKAARGVVYVGRLPYGFFERELRGYFSQFGELTRLRLSRNK
KPGKSKHYAFLEFRDPDVAEIVAETMDGYLLYRHILQCSVVAPARVHPRL
FRGANRRFVPAQQRAAARILRNAVRSP
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mRNA from alignment at M-pyrifera_M_contig86039:427..807+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86039.20049.1 ID=mRNA_M-pyrifera_M_contig86039.20049.1|Name=mRNA_M-pyrifera_M_contig86039.20049.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig86039:427..807+ (Macrocystis pyrifera P11B4 male)
GCGCGGGCGCGTGAGGAGAAGAGGGCCGCGAAGGCCGCGAGGGGCGTGGT
GTACGTGGGAAGGCTGCCGTACGGCTTCTTCGAGCGCGAGCTGCGCGGCT
ACTTCTCGCAGTTCGGCGAGCTCACCCGCCTCCGCCTCTCGCGCAACAAG
AAGCCCGGCAAGAGCAAGCACTACGCATTCCTCGAGTTCCGCGACCCCGA
CGTCGCAGAGATCGTCGCCGAGACCATGGACGGCTACCTCCTCTACCGCC
ACATTCTCCAGTGCTCCGTCGTGGCGCCGGCCCGCGTCCACCCCCGCCTC
TTCCGCGGCGCAAACCGCCGCTTCGTTCCCGCCCAGCAGCGCGCCGCCGC
ACGTATCCTCCGCAACGCCGTGCGTTCTCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86039:427..807+

>mRNA_M-pyrifera_M_contig86039.20049.1 ID=mRNA_M-pyrifera_M_contig86039.20049.1|Name=mRNA_M-pyrifera_M_contig86039.20049.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig86039:427..807+ (Macrocystis pyrifera P11B4 male)
GCGCGGGCGCGTGAGGAGAAGAGGGCCGCGAAGGCCGCGAGGGGCGTGGT
GTACGTGGGAAGGCTGCCGTACGGCTTCTTCGAGCGCGAGCTGCGCGGCT
ACTTCTCGCAGTTCGGCGAGCTCACCCGCCTCCGCCTCTCGCGCAACAAG
AAGCCCGGCAAGAGCAAGCACTACGCATTCCTCGAGTTCCGCGACCCCGA
CGTCGCAGAGATCGTCGCCGAGACCATGGACGGCTACCTCCTCTACCGCC
ACATTCTCCAGTGCTCCGTCGTGGCGCCGGCCCGCGTCCACCCCCGCCTC
TTCCGCGGCGCAAACCGCCGCTTCGTTCCCGCCCAGCAGCGCGCCGCCGC
ACGTATCCTCCGCAACGCCGTGCGTTCTCCTGCGCGGGCGCGTGAGGAGA
AGAGGGCCGCGAAGGCCGCGAGGGGCGTGGTGTACGTGGGAAGGCTGCCG
TACGGCTTCTTCGAGCGCGAGCTGCGCGGCTACTTCTCGCAGTTCGGCGA
GCTCACCCGCCTCCGCCTCTCGCGCAACAAGAAGCCCGGCAAGAGCAAGC
ACTACGCATTCCTCGAGTTCCGCGACCCCGACGTCGCAGAGATCGTCGCC
GAGACCATGGACGGCTACCTCCTCTACCGCCACATTCTCCAGTGCTCCGT
CGTGGCGCCGGCCCGCGTCCACCCCCGCCTCTTCCGCGGCGCAAACCGCC
GCTTCGTTCCCGCCCAGCAGCGCGCCGCCGCACGTATCCTCCGCAACGCC
GTGCGTTCTCCT
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