mRNA_M-pyrifera_M_contig86005.20045.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86005.20045.1
Unique NamemRNA_M-pyrifera_M_contig86005.20045.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86005.20045.1 vs. uniprot
Match: A0A6P8QL54_GEOSA (VPS9 domain-containing protein 1 isoform X1 n=3 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8QL54_GEOSA)

HSP 1 Score: 63.5 bits (153), Expect = 1.490e-9
Identity = 31/106 (29.25%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:    1 YAKALGIFRTLLLQRTPRQKCATVAKALQAVCDAPLDHYRG---RLPPRKATMGTDELVDAFAFIVVQSHVTSLISQLGFIETFLPARLRIGADGFAVTNLHTAVS 309
            Y  A+   R L L++ P++K   + K L+ +C+   ++      +  P  A +G D+L+   +FIV++S +  L+S+   +E F+     IGA+G+ +T+L +A+S
Sbjct:  567 YKAAVEELRLLTLEQCPQKKLECIVKTLRVICECAEEYSNTEELKAQPNSAAIGADDLLPILSFIVLRSDLPQLVSECAALEEFIHEGYLIGAEGYCLTSLQSALS 672
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BLAST of mRNA_M-pyrifera_M_contig86005.20045.1 vs. uniprot
Match: A0A024U504_9STRA (VPS9 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U504_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.520e-7
Identity = 33/106 (31.13%), Postives = 53/106 (50.00%), Query Frame = 1 
Query:    1 YAKALGIFRTLLLQRTPRQKCATVAKALQAVCDAPLDHYRGRLPP---RKATMGTDELVDAFAFIVVQSHVTSLISQLGFIETFLPARLRIGADGFAVTNLHTAVS 309
            Y   +     L  QR+P  K A V++  + +      +Y G   P    +  +  D LV   A++VV ++   L S L  ++ FLP R+ IG + +AVT LHTA++
Sbjct:  314 YTNCITKMSELPHQRSPSAKVAVVSQVCRLIDVTIHTYYAGHPNPPPVEQLHIAADALVSVLAYVVVMANCPHLASHLALMDAFLPDRISIGEEAYAVTILHTAIA 419
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86005.20045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6P8QL54_GEOSA1.490e-929.25VPS9 domain-containing protein 1 isoform X1 n=3 Ta... [more]
A0A024U504_9STRA1.520e-731.13VPS9 domain-containing protein n=1 Tax=Aphanomyces... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86005contigM-pyrifera_M_contig86005:543..851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score64.7
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog59538.XP_005956419.1
Preferred nameVPS9D1
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005215,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034220,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046034,GO:0046390,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
EggNOG free text desc.VPS9 domain-containing protein 1
EggNOG OGs28KBR@1,2QSSQ@2759,39RPX@33154,3BF3I@33208,3CV2E@33213,3J72T@40674,480CT@7711,493J6@7742,4J16Q@91561
COG Functional cat.S
Best tax levelCetartiodactyla
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.5560575-CDS-M-pyrifera_M_contig86005:542..8511622816770.5560575-CDS-M-pyrifera_M_contig86005:542..851Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86005 543..851 +
1692278168.4635203-CDS-M-pyrifera_M_contig86005:542..8511692278168.4635203-CDS-M-pyrifera_M_contig86005:542..851Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86005 543..851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86005.20045.1prot_M-pyrifera_M_contig86005.20045.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86005 543..851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86005.20045.1

>prot_M-pyrifera_M_contig86005.20045.1 ID=prot_M-pyrifera_M_contig86005.20045.1|Name=mRNA_M-pyrifera_M_contig86005.20045.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
YAKALGIFRTLLLQRTPRQKCATVAKALQAVCDAPLDHYRGRLPPRKATM
GTDELVDAFAFIVVQSHVTSLISQLGFIETFLPARLRIGADGFAVTNLHT
AVS
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mRNA from alignment at M-pyrifera_M_contig86005:543..851+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86005.20045.1 ID=mRNA_M-pyrifera_M_contig86005.20045.1|Name=mRNA_M-pyrifera_M_contig86005.20045.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig86005:543..851+ (Macrocystis pyrifera P11B4 male)
TATGCCAAAGCGCTGGGAATTTTTCGAACATTGTTGTTACAAAGAACGCC
GAGACAAAAGTGTGCAACTGTGGCAAAGGCACTACAAGCCGTTTGTGATG
CTCCGTTGGATCACTACAGAGGACGACTGCCCCCACGAAAAGCCACTATG
GGAACAGATGAGTTGGTTGATGCGTTTGCATTCATCGTGGTTCAGTCGCA
CGTCACTTCACTCATCTCCCAACTTGGTTTCATTGAAACTTTCCTCCCTG
CAAGACTGCGTATTGGAGCTGATGGTTTTGCTGTCACAAACCTGCACACT
GCAGTTTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86005:543..851+

>mRNA_M-pyrifera_M_contig86005.20045.1 ID=mRNA_M-pyrifera_M_contig86005.20045.1|Name=mRNA_M-pyrifera_M_contig86005.20045.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig86005:543..851+ (Macrocystis pyrifera P11B4 male)
TATGCCAAAGCGCTGGGAATTTTTCGAACATTGTTGTTACAAAGAACGCC
GAGACAAAAGTGTGCAACTGTGGCAAAGGCACTACAAGCCGTTTGTGATG
CTCCGTTGGATCACTACAGAGGACGACTGCCCCCACGAAAAGCCACTATG
GGAACAGATGAGTTGGTTGATGCGTTTGCATTCATCGTGGTTCAGTCGCA
CGTCACTTCACTCATCTCCCAACTTGGTTTCATTGAAACTTTCCTCCCTG
CAAGACTGCGTATTGGAGCTGATGGTTTTGCTGTCACAAACCTGCACACT
GCAGTTTCCTATGCCAAAGCGCTGGGAATTTTTCGAACATTGTTGTTACA
AAGAACGCCGAGACAAAAGTGTGCAACTGTGGCAAAGGCACTACAAGCCG
TTTGTGATGCTCCGTTGGATCACTACAGAGGACGACTGCCCCCACGAAAA
GCCACTATGGGAACAGATGAGTTGGTTGATGCGTTTGCATTCATCGTGGT
TCAGTCGCACGTCACTTCACTCATCTCCCAACTTGGTTTCATTGAAACTT
TCCTCCCTGCAAGACTGCGTATTGGAGCTGATGGTTTTGCTGTCACAAAC
CTGCACACTGCAGTTTCC
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