mRNA_M-pyrifera_M_contig85988.20041.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85988.20041.1
Unique NamemRNA_M-pyrifera_M_contig85988.20041.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85988.20041.1 vs. uniprot
Match: A0A8F4J920_9ACTN (Methyltransferase domain-containing protein n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4J920_9ACTN)

HSP 1 Score: 129 bits (324), Expect = 9.020e-34
Identity = 61/111 (54.95%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    1 RAPEHAMIHESVGFTDLVKRATVKASEISASEYRAGLVRLNSLFGWVAPQIVIVAGLTGWRHAVGEKRLAGWQPDHLGGRPVYLMPNPSGLNASTSLDDLIGHLRTALKGP 333
            R P H + H+ VG TDLVKRAT +A E+  +EYR GL RL+ L  W+ P  V V GL GWR AV  K + GWQ   +GG PVY++P+ SGLNA TSL DL+GHL  A  GP
Sbjct:  258 RDPRHLLRHDHVGMTDLVKRATARADELRTAEYREGLERLDQLCAWLQPAAVAVVGLAGWRAAVDRKAVVGWQERAVGGSPVYVLPSTSGLNAGTSLADLVGHLLAAADGP 368          
BLAST of mRNA_M-pyrifera_M_contig85988.20041.1 vs. uniprot
Match: A0A2D8LU89_9ACTN (UDG domain-containing protein (Fragment) n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LU89_9ACTN)

HSP 1 Score: 123 bits (309), Expect = 5.460e-33
Identity = 58/111 (52.25%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 RAPEHAMIHESVGFTDLVKRATVKASEISASEYRAGLVRLNSLFGWVAPQIVIVAGLTGWRHAVGEKRLAGWQPDHLGGRPVYLMPNPSGLNASTSLDDLIGHLRTALKGP 333
            R P HA+ H  +G TDLVKRAT +A E++  EYR GL R+  L  W+ P+ V   GL GWR A       GWQ   LGG PVY+MP+ SGLNA +SL DL  HLR A  GP
Sbjct:  106 REPRHALAHHGMGMTDLVKRATPRADELTTDEYRTGLARVEQLCAWLRPEAVCFVGLAGWRAAADRTATPGWQESDLGGSPVYVMPSTSGLNAHSSLADLTDHLRHAATGP 216          
BLAST of mRNA_M-pyrifera_M_contig85988.20041.1 vs. uniprot
Match: A0A2E6ZG21_9ACTN (Mismatch-specific DNA-glycosylase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6ZG21_9ACTN)

HSP 1 Score: 121 bits (303), Expect = 1.340e-32
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 1
Query:    1 RAPEHAMIHESVGFTDLVKRATVKASEISASEYRAGLVRLNSLFGWVAPQIVIVAGLTGWRHAVGEKRLA-GWQPDHLGGRPVYLMPNPSGLNASTSLDDLIGHLRTALK 327
            R PEHA+  + VG TDLVKRA+ +ASEI+  EY+ GL RL+ L  W++P+IV V G+TGWR A+  + L  G QP  LGGRPV+++PNPSGLNA TS  DL+   RT L+
Sbjct:   61 RDPEHALKQDRVGMTDLVKRASTRASEITKVEYQEGLARLDRLCRWLSPEIVCVLGITGWRAALEARHLVMGEQPTKLGGRPVHVLPNPSGLNAHTSHADLVKRFRTLLE 170          
BLAST of mRNA_M-pyrifera_M_contig85988.20041.1 vs. uniprot
Match: A0A2D6U6M2_9ACTN (Uncharacterized protein n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U6M2_9ACTN)

HSP 1 Score: 122 bits (305), Expect = 4.850e-31
Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    7 PEHAMIHESVGFTDLVKRATVKASEISASEYRAGLVRLNSLFGWVAPQIVIVAGLTGWRHAVGEKRLAGWQPDHLGGRPVYLMPNPSGLNASTSLDDLIGHLRTALKGP 333
            P HA+ H  +G TDLVKRAT +A E++  EYR GL R+  L  W+ P+ V   GL GWR A       GWQ   LGG PVY+MP+ SGLNA +SL DL  HLR A  GP
Sbjct:  252 PRHALAHHGMGMTDLVKRATPRADELTTDEYRTGLARVEQLCAWLRPEAVCFVGLAGWRAAADRTATPGWQESDLGGSPVYVMPSTSGLNAHSSLADLTDHLRHAATGP 360          
BLAST of mRNA_M-pyrifera_M_contig85988.20041.1 vs. uniprot
Match: A0A3S0D7A8_9ACTN (Mismatch-specific DNA-glycosylase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A3S0D7A8_9ACTN)

HSP 1 Score: 116 bits (290), Expect = 7.070e-31
Identity = 59/110 (53.64%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 RAPEHAMIHESVGFTDLVKRATVKASEISASEYRAGLVRLNSLFGWVAPQIVIVAGLTGWRHAVGEKRLA-GWQPDHLGGRPVYLMPNPSGLNASTSLDDLIGHLRTALK 327
            R P H + H  +G TDLVKR T  A E+ A E+R GL RL+ L  W+ P  V V G+TGWR A G +    G Q   LGGRPVY+MPNPSGLNA T +DDL+ HLR A +
Sbjct:   42 RDPLHLLRHAGIGMTDLVKRTTATAGELRAEEFRDGLERLDVLCDWLQPTAVCVLGITGWRAATGARSARLGPQAATLGGRPVYVMPNPSGLNAHTDVDDLVRHLRAATE 151          
BLAST of mRNA_M-pyrifera_M_contig85988.20041.1 vs. uniprot
Match: A0A351EVH7_9ACTN (Mismatch-specific DNA-glycosylase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EVH7_9ACTN)

HSP 1 Score: 114 bits (286), Expect = 8.480e-31
Identity = 55/110 (50.00%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 RAPEHAMIHESVGFTDLVKRATVKASEISASEYRAGLVRLNSLFGWVAPQIVIVAGLTGWRHAVGEKRLAGWQPDHLGGRPVYLMPNPSGLNASTSLDDLIGHLRTALKG 330
            R P  A+    +G TD+VKRAT +A E+  SEY AG  RL  L  W+ P+ + + GL GWR AV  K   GWQP+ +GGRPVYLMP+ SGLNA  ++D L  HL  A  G
Sbjct:    1 RDPAQALAAHGMGMTDMVKRATRRADELDKSEYLAGFERLGKLAEWLEPKTICMVGLAGWRAAVNRKAQRGWQPETVGGRPVYLMPSTSGLNAHDTVDTLAEHLSVAAAG 110          
BLAST of mRNA_M-pyrifera_M_contig85988.20041.1 vs. uniprot
Match: A0A7K2ED29_9ACTN (Methyltransferase domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2ED29_9ACTN)

HSP 1 Score: 119 bits (297), Expect = 7.090e-30
Identity = 62/107 (57.94%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 RAPEHAMIHESVGFTDLVKRATVKASEISASEYRAGLVRLNSLFGWVAPQIVIVAGLTGWRHAVGEKRLAGWQPDHLGGRPVYLMPNPSGLNASTSLDDLIGHLRTA 321
            R P HA++   VG TDLVKRAT KA+E+SA+EY AGL RL  L   + P IV   GL GWR AV  +   G Q  H+GGRP YLMP+ SGLNA TSL DL  HLR A
Sbjct:  250 RDPRHALVAHGVGMTDLVKRATRKAAELSAAEYAAGLERLERLAERLEPGIVCFVGLAGWRAAVDRRASPGPQSRHIGGRPAYLMPSTSGLNARTSLQDLTAHLRAA 356          
BLAST of mRNA_M-pyrifera_M_contig85988.20041.1 vs. uniprot
Match: UPI001D0FC5A9 (methyltransferase domain-containing protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D0FC5A9)

HSP 1 Score: 119 bits (298), Expect = 8.930e-30
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    1 RAPEHAMIHESVGFTDLVKRATVKASEISASEYRAGLVRLNSLFGWVAPQIVIVAGLTGWRHAVGEKRLA-GWQPDHLGGRPVYLMPNPSGLNASTSLDDLIGHLRTALK-----GPPA 339
            R P H + H+++G +DLVKRAT  A E+   E+R G  RL++L  W+ P  V V G+TGWR A G++  A G Q   LGGRPV++MPNPSGLNA TS+ DL  HLR AL+     GPP+
Sbjct:  263 RDPVHLLRHQAIGMSDLVKRATATAKELRPEEFRLGFERLDALCAWLRPGAVCVLGVTGWRDATGDRHAALGRQERTLGGRPVHVMPNPSGLNAHTSVADLADHLRAALELGAAVGPPS 381          
BLAST of mRNA_M-pyrifera_M_contig85988.20041.1 vs. uniprot
Match: UPI001C63B102 (methyltransferase domain-containing protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C63B102)

HSP 1 Score: 117 bits (292), Expect = 4.540e-29
Identity = 56/112 (50.00%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 RAPEHAMIHESVGFTDLVKRATVKASEISASEYRAGLVRLNSLFGWVAPQIVIVAGLTGWRHAVGEKRLAGWQPDHLGGRPVYLMPNPSGLNASTSLDDLIGHLRTALKGPP 336
            R P   +    +G TDLVKRAT +AS+++ +EYRAG+ RL+ L   +AP+ V++ GL GWR         GWQ  HLG  PVY+MP+ SGLNA TS  DL+ HLR A  GPP
Sbjct:  256 RDPWRLLATGGIGMTDLVKRATPRASDLTTAEYRAGVARLDRLCTMLAPEAVLLVGLAGWRAGADRAATPGWQARHLGASPVYVMPSTSGLNAGTSRADLVAHLRAAAIGPP 367          
BLAST of mRNA_M-pyrifera_M_contig85988.20041.1 vs. uniprot
Match: A0A2D6FTN6_9ACTN (UDG domain-containing protein n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6FTN6_9ACTN)

HSP 1 Score: 113 bits (282), Expect = 5.410e-29
Identity = 55/102 (53.92%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 RAPEHAMIHESVGFTDLVKRATVKASEISASEYRAGLVRLNSLFGWVAPQIVIVAGLTGWRHAVGEKRLA-GWQPDHLGGRPVYLMPNPSGLNASTSLDDLI 303
            R P HA+ H  +G +DLVKRA+ KAS IS +EY+AG+ RL+ L GW++P +V V G+TGWR A+ ++ L  G Q   LGGR VY++PNPSGLNA T+  DL+
Sbjct:   95 RDPVHALKHHRIGMSDLVKRASTKASAISGAEYQAGVARLDRLCGWLSPGVVCVLGITGWRSALNDRDLRLGKQTIRLGGRTVYVLPNPSGLNAHTNHGDLV 196          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85988.20041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F4J920_9ACTN9.020e-3454.95Methyltransferase domain-containing protein n=1 Ta... [more]
A0A2D8LU89_9ACTN5.460e-3352.25UDG domain-containing protein (Fragment) n=3 Tax=A... [more]
A0A2E6ZG21_9ACTN1.340e-3255.45Mismatch-specific DNA-glycosylase n=1 Tax=Acidimic... [more]
A0A2D6U6M2_9ACTN4.850e-3152.29Uncharacterized protein n=4 Tax=Acidimicrobiaceae ... [more]
A0A3S0D7A8_9ACTN7.070e-3153.64Mismatch-specific DNA-glycosylase n=1 Tax=Acidimic... [more]
A0A351EVH7_9ACTN8.480e-3150.00Mismatch-specific DNA-glycosylase (Fragment) n=1 T... [more]
A0A7K2ED29_9ACTN7.090e-3057.94Methyltransferase domain-containing protein n=1 Ta... [more]
UPI001D0FC5A98.930e-3051.26methyltransferase domain-containing protein n=1 Ta... [more]
UPI001C63B1024.540e-2950.00methyltransferase domain-containing protein n=1 Ta... [more]
A0A2D6FTN6_9ACTN5.410e-2953.92UDG domain-containing protein n=3 Tax=Acidimicrobi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85988contigM-pyrifera_M_contig85988:506..853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score88.6
Seed ortholog evalue2e-15
Seed eggNOG ortholog1429046.RR21198_2910
Preferred namemug
KEGG rclassRC00183
KEGG koko:K01934,ko:K03649
KEGG ReactionR02301
KEGG Pathwayko00670,ko01100,ko03410,map00670,map01100,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0000700,GO:0003674,GO:0003824,GO:0004844,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008263,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097506,GO:0140097,GO:1901360
EggNOG free text desc.Uracil DNA glycosylase superfamily
EggNOG OGs2GNS5@201174,4FW6C@85025,COG3663@1,COG3663@2
EC3.2.2.28,6.3.3.2
COG Functional cat.L
Best tax levelNocardiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size348
Cds size330
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.2742603-CDS-M-pyrifera_M_contig85988:505..8351622816770.2742603-CDS-M-pyrifera_M_contig85988:505..835Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85988 506..835 -
1692278168.2780652-CDS-M-pyrifera_M_contig85988:505..8351692278168.2780652-CDS-M-pyrifera_M_contig85988:505..835Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85988 506..835 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.2847884-UTR-M-pyrifera_M_contig85988:835..8531622816770.2847884-UTR-M-pyrifera_M_contig85988:835..853Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85988 836..853 -
1692278168.2896256-UTR-M-pyrifera_M_contig85988:835..8531692278168.2896256-UTR-M-pyrifera_M_contig85988:835..853Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85988 836..853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85988.20041.1prot_M-pyrifera_M_contig85988.20041.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85988 506..835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85988.20041.1

>prot_M-pyrifera_M_contig85988.20041.1 ID=prot_M-pyrifera_M_contig85988.20041.1|Name=mRNA_M-pyrifera_M_contig85988.20041.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MIHESVGFTDLVKRATVKASEISASEYRAGLVRLNSLFGWVAPQIVIVAG
LTGWRHAVGEKRLAGWQPDHLGGRPVYLMPNPSGLNASTSLDDLIGHLRT
ALKGPPAGT*
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mRNA from alignment at M-pyrifera_M_contig85988:506..853-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85988.20041.1 ID=mRNA_M-pyrifera_M_contig85988.20041.1|Name=mRNA_M-pyrifera_M_contig85988.20041.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig85988:506..853- (Macrocystis pyrifera P11B4 male)
CGGGCCCCTGAACACGCCATGATCCATGAATCCGTCGGGTTCACCGATCT GGTGAAGCGGGCAACCGTGAAGGCCAGCGAGATCAGCGCCTCGGAGTACC GTGCCGGCCTCGTACGGCTCAACAGCCTGTTCGGATGGGTCGCACCCCAG ATCGTCATCGTCGCCGGACTCACCGGCTGGCGTCATGCCGTCGGCGAGAA ACGACTGGCCGGTTGGCAGCCCGATCATCTCGGCGGACGACCCGTCTATC TGATGCCCAACCCATCGGGCCTGAATGCGAGCACATCGCTCGACGATCTC ATCGGGCATCTCCGCACCGCCCTGAAGGGCCCTCCAGCAGGCACCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85988:506..853-

>mRNA_M-pyrifera_M_contig85988.20041.1 ID=mRNA_M-pyrifera_M_contig85988.20041.1|Name=mRNA_M-pyrifera_M_contig85988.20041.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig85988:506..853- (Macrocystis pyrifera P11B4 male)
ATGATCCATGAATCCGTCGGGTTCACCGATCTGGTGAAGCGGGCAACCGT
GAAGGCCAGCGAGATCAGCGCCTCGGAGTACCGTGCCGGCCTCGTACGGC
TCAACAGCCTGTTCGGATGGGTCGCACCCCAGATCGTCATCGTCGCCGGA
CTCACCGGCTGGCGTCATGCCGTCGGCGAGAAACGACTGGCCGGTTGGCA
GCCCGATCATCTCGGCGGACGACCCGTCTATCTGATGCCCAACCCATCGG
GCCTGAATGCGAGCACATCGCTCGACGATCTCATCGGGCATCTCCGCACC
GCCCTGAAGGGCCCTCCAGCAGGCACCTGAATGATCCATGAATCCGTCGG
GTTCACCGATCTGGTGAAGCGGGCAACCGTGAAGGCCAGCGAGATCAGCG
CCTCGGAGTACCGTGCCGGCCTCGTACGGCTCAACAGCCTGTTCGGATGG
GTCGCACCCCAGATCGTCATCGTCGCCGGACTCACCGGCTGGCGTCATGC
CGTCGGCGAGAAACGACTGGCCGGTTGGCAGCCCGATCATCTCGGCGGAC
GACCCGTCTATCTGATGCCCAACCCATCGGGCCTGAATGCGAGCACATCG
CTCGACGATCTCATCGGGCATCTCCGCACCGCCCTGAAGGGCCCTCCAGC
AGGCACCTGA
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