mRNA_M-pyrifera_M_contig8594.20034.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8594.20034.1
Unique NamemRNA_M-pyrifera_M_contig8594.20034.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8594.20034.1 vs. uniprot
Match: A0A6H5KXF7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.870e-19
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1 
Query:   10 QLVSVVMTEGQDPDVFINEIYYIRDELVEMGEVIHDDILLDIVLEGLTDG-YLQIKYNAEADNNFTLENAIYTMRNMHANRMAKNGPARKQKGRKSAMVTTFTKKGKCHICKKAGHWAREC--RNRR 381
            +L ++ M    DPD F++++  +RDEL  +G  I DD  ++I+L+ L +  Y  IKY AE  ++ TLE A+YTMRN++ NR   +G +R  KGR SAMV + TK   C  C K GH  + C  RN+R
Sbjct:  254 KLYNMTMDVDMDPDAFMHDMTELRDELQLLGSPIPDDQFMNIILDCLPEELYSGIKYEAETKDDLTLEQALYTMRNLYINRKEASGSSRAAKGRSSAMVASTTKT--CSFCHKKGHLTQHCWKRNKR 378
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8594.20034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXF7_9PHAE8.870e-1942.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8594contigM-pyrifera_M_contig8594:4971..5381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816769.8795788-CDS-M-pyrifera_M_contig8594:4970..53811622816769.8795788-CDS-M-pyrifera_M_contig8594:4970..5381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8594 4971..5381 -
1692278168.0052135-CDS-M-pyrifera_M_contig8594:4970..53811692278168.0052135-CDS-M-pyrifera_M_contig8594:4970..5381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8594 4971..5381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8594.20034.1prot_M-pyrifera_M_contig8594.20034.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8594 4971..5381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8594.20034.1

>prot_M-pyrifera_M_contig8594.20034.1 ID=prot_M-pyrifera_M_contig8594.20034.1|Name=mRNA_M-pyrifera_M_contig8594.20034.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MKNQLVSVVMTEGQDPDVFINEIYYIRDELVEMGEVIHDDILLDIVLEGL
TDGYLQIKYNAEADNNFTLENAIYTMRNMHANRMAKNGPARKQKGRKSAM
VTTFTKKGKCHICKKAGHWARECRNRRSSMKDTNKNV
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mRNA from alignment at M-pyrifera_M_contig8594:4971..5381-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8594.20034.1 ID=mRNA_M-pyrifera_M_contig8594.20034.1|Name=mRNA_M-pyrifera_M_contig8594.20034.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig8594:4971..5381- (Macrocystis pyrifera P11B4 male)
ATGAAAAATCAACTTGTCTCTGTGGTGATGACAGAAGGTCAGGACCCTGA
CGTATTTATAAATGAAATTTATTATATACGAGACGAATTGGTTGAGATGG
GCGAAGTCATACATGATGATATCCTACTTGATATTGTGTTGGAAGGACTG
ACAGATGGATATCTCCAGATCAAATACAACGCAGAAGCGGACAACAATTT
CACGCTGGAAAATGCTATTTATACGATGCGCAATATGCATGCAAATCGAA
TGGCAAAAAACGGGCCTGCGCGAAAACAGAAGGGGCGTAAGTCGGCTATG
GTAACAACTTTCACTAAGAAGGGGAAGTGCCATATCTGCAAAAAAGCCGG
ACATTGGGCAAGAGAATGCCGCAATCGCAGAAGTTCGATGAAAGATACGA
ACAAGAATGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8594:4971..5381-

>mRNA_M-pyrifera_M_contig8594.20034.1 ID=mRNA_M-pyrifera_M_contig8594.20034.1|Name=mRNA_M-pyrifera_M_contig8594.20034.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig8594:4971..5381- (Macrocystis pyrifera P11B4 male)
ATGAAAAATCAACTTGTCTCTGTGGTGATGACAGAAGGTCAGGACCCTGA
CGTATTTATAAATGAAATTTATTATATACGAGACGAATTGGTTGAGATGG
GCGAAGTCATACATGATGATATCCTACTTGATATTGTGTTGGAAGGACTG
ACAGATGGATATCTCCAGATCAAATACAACGCAGAAGCGGACAACAATTT
CACGCTGGAAAATGCTATTTATACGATGCGCAATATGCATGCAAATCGAA
TGGCAAAAAACGGGCCTGCGCGAAAACAGAAGGGGCGTAAGTCGGCTATG
GTAACAACTTTCACTAAGAAGGGGAAGTGCCATATCTGCAAAAAAGCCGG
ACATTGGGCAAGAGAATGCCGCAATCGCAGAAGTTCGATGAAAGATACGA
ACAAGAATGTGATGAAAAATCAACTTGTCTCTGTGGTGATGACAGAAGGT
CAGGACCCTGACGTATTTATAAATGAAATTTATTATATACGAGACGAATT
GGTTGAGATGGGCGAAGTCATACATGATGATATCCTACTTGATATTGTGT
TGGAAGGACTGACAGATGGATATCTCCAGATCAAATACAACGCAGAAGCG
GACAACAATTTCACGCTGGAAAATGCTATTTATACGATGCGCAATATGCA
TGCAAATCGAATGGCAAAAAACGGGCCTGCGCGAAAACAGAAGGGGCGTA
AGTCGGCTATGGTAACAACTTTCACTAAGAAGGGGAAGTGCCATATCTGC
AAAAAAGCCGGACATTGGGCAAGAGAATGCCGCAATCGCAGAAGTTCGAT
GAAAGATACGAACAAGAATGTG
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