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Homology
BLAST of mRNA_M-pyrifera_M_contig8592.20026.1 vs. uniprot
Match: A0A6H5J9V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V3_9PHAE) HSP 1 Score: 275 bits (702), Expect = 5.640e-91 Identity = 119/206 (57.77%), Postives = 161/206 (78.16%), Query Frame = 1
Query: 1 PWKNKQPEMRHSVVELHCGNAISFMQARDALASMRADHDKNGCGFFAFTVVRPPLDWVVSLYNDICHRRLHGHKDTCPQKG---ISPREEMLIYPHEDGMLSYLKHGWNGWSSPGPVDASVVEDTSKSLRSYLDIVAFTEEVPKLRRFLTTHFSAPGGVLSKEDEDLLNQQAVQNANPRKAVGISEFNPEEVQRLNATIQLDWKLY 609
PW + P RH ++E HCG+A+S MQAR+AL +MR +H KN CGFFAFT+VRPPL+W+VSLY+D+CHRRL GHKDTCPQ+ ++P++EML YPH DG++SYL HG+NGW+SPGPVD VE+ +S +LD+VA T EVP++RR+LT F AP GVL+ + ED L++ +QNAN K + +S+F+P+E+ +LN+TIQLDW LY
Sbjct: 10 PWLKESPSHRHKLIEFHCGDALSLMQAREALETMRHEHAKNDCGFFAFTMVRPPLEWLVSLYDDLCHRRLRGHKDTCPQQAGDSMTPKQEMLAYPHRDGLVSYLAHGFNGWASPGPVDEGTVEEILESFGRHLDLVALTSEVPQIRRYLTKRFVAPHGVLTPQVEDALHRGELQNANKVKTIRLSDFDPDELAQLNSTIQLDWMLY 215
BLAST of mRNA_M-pyrifera_M_contig8592.20026.1 vs. uniprot
Match: D7G147_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G147_ECTSI) HSP 1 Score: 269 bits (688), Expect = 9.920e-89 Identity = 117/204 (57.35%), Postives = 160/204 (78.43%), Query Frame = 1
Query: 1 PWKNKQPEMRHSVVELHCGNAISFMQARDALASMRADHDKNGCGFFAFTVVRPPLDWVVSLYNDICHRRLHGHKDTCPQKG-ISPREEMLIYPHEDGMLSYLKHGWNGWSSPGPVDASVVEDTSKSLRSYLDIVAFTEEVPKLRRFLTTHFSAPGGVLSKEDEDLLNQQAVQNANPRKAVGISEFNPEEVQRLNATIQLDWKLY 609
PW + P RH ++E HCG+A+SFMQAR+AL +MR +H KN CGFFAFT+VR PL+W+VSLY+D+CHRRL GHK+TCPQ+ ++P++EML YPH DG++SYL HG+NGW+SPG VD VE+ +S +LD+VA T EVP++RR+LT F AP GVL+ + ED L++ +QNAN K + +S+F+P+E+ +LN+TIQLDW LY
Sbjct: 20 PWLQESPSQRHKLIEFHCGDALSFMQAREALETMRHEHAKNDCGFFAFTMVRQPLEWLVSLYDDLCHRRLKGHKETCPQQNSMTPKQEMLAYPHRDGLVSYLAHGFNGWASPGSVDERTVEEILESFGRHLDLVALTSEVPQIRRYLTRRFVAPHGVLTPQVEDNLDRGELQNANKVKTIRLSDFDPDELAQLNSTIQLDWMLY 223
BLAST of mRNA_M-pyrifera_M_contig8592.20026.1 vs. uniprot
Match: D7FL74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL74_ECTSI) HSP 1 Score: 235 bits (599), Expect = 5.850e-74 Identity = 100/168 (59.52%), Postives = 133/168 (79.17%), Query Frame = 1
Query: 1 PWKNKQPEMRHSVVELHCGNAISFMQARDALASMRADHDKNGCGFFAFTVVRPPLDWVVSLYNDICHRRLHGHKDTCPQK-GISPREEMLIYPHEDGMLSYLKHGWNGWSSPGPVDASVVEDTSKSLRSYLDIVAFTEEVPKLRRFLTTHFSAPGGVLSKEDEDLLNQ 501
PW + P RH ++E HCG+A+SFMQAR+AL +MR +H KN CGFFAFT+VRPPL+W+VSLY+D+CHRRL GHKDTCPQ+ ++P++EML YPH DG++SYL HG+ GW+SPGPVD VE+ +S +LD+VA T EVP++RR+LT F AP GVL+ + ED L++
Sbjct: 144 PWLKESPSQRHKLIEFHCGDALSFMQAREALETMRHEHAKNDCGFFAFTMVRPPLEWLVSLYDDLCHRRLRGHKDTCPQQDSMTPKQEMLAYPHRDGLVSYLAHGFKGWASPGPVDEGTVEEMLESFGRHLDLVALTSEVPQIRRYLTKRFVAPHGVLTPQVEDALDR 311
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 609 |
Cds size | 585 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816769.5086439-UTR-M-pyrifera_M_contig8592:5668..5692 | 1622816769.5086439-UTR-M-pyrifera_M_contig8592:5668..5692 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig8592 5669..5692 + |
1692278167.7985268-UTR-M-pyrifera_M_contig8592:5668..5692 | 1692278167.7985268-UTR-M-pyrifera_M_contig8592:5668..5692 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig8592 5669..5692 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816769.5239708-CDS-M-pyrifera_M_contig8592:5692..5736 | 1622816769.5239708-CDS-M-pyrifera_M_contig8592:5692..5736 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8592 5693..5736 + |
1692278167.811298-CDS-M-pyrifera_M_contig8592:5692..5736 | 1692278167.811298-CDS-M-pyrifera_M_contig8592:5692..5736 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8592 5693..5736 + |
1622816769.534574-CDS-M-pyrifera_M_contig8592:6243..6415 | 1622816769.534574-CDS-M-pyrifera_M_contig8592:6243..6415 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8592 6244..6415 + |
1692278167.8202586-CDS-M-pyrifera_M_contig8592:6243..6415 | 1692278167.8202586-CDS-M-pyrifera_M_contig8592:6243..6415 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8592 6244..6415 + |
1622816769.5458179-CDS-M-pyrifera_M_contig8592:7061..7181 | 1622816769.5458179-CDS-M-pyrifera_M_contig8592:7061..7181 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8592 7062..7181 + |
1692278167.8295798-CDS-M-pyrifera_M_contig8592:7061..7181 | 1692278167.8295798-CDS-M-pyrifera_M_contig8592:7061..7181 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8592 7062..7181 + |
1622816769.5574415-CDS-M-pyrifera_M_contig8592:7333..7480 | 1622816769.5574415-CDS-M-pyrifera_M_contig8592:7333..7480 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8592 7334..7480 + |
1692278167.8399296-CDS-M-pyrifera_M_contig8592:7333..7480 | 1692278167.8399296-CDS-M-pyrifera_M_contig8592:7333..7480 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8592 7334..7480 + |
1622816769.5699341-CDS-M-pyrifera_M_contig8592:8507..8609 | 1622816769.5699341-CDS-M-pyrifera_M_contig8592:8507..8609 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8592 8508..8609 + |
1692278167.8502963-CDS-M-pyrifera_M_contig8592:8507..8609 | 1692278167.8502963-CDS-M-pyrifera_M_contig8592:8507..8609 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8592 8508..8609 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig8592.20026.1 >prot_M-pyrifera_M_contig8592.20026.1 ID=prot_M-pyrifera_M_contig8592.20026.1|Name=mRNA_M-pyrifera_M_contig8592.20026.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
MRHSVVELHCGNAISFMQARDALASMRADHDKNGCGFFAFTVVRPPLDWV VSLYNDICHRRLHGHKDTCPQKGISPREEMLIYPHEDGMLSYLKHGWNGW SSPGPVDASVVEDTSKSLRSYLDIVAFTEEVPKLRRFLTTHFSAPGGVLS KEDEDLLNQQAVQNANPRKAVGISEFNPEEVQRLNATIQLDWKLY back to topmRNA from alignment at M-pyrifera_M_contig8592:5669..8609+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig8592.20026.1 ID=mRNA_M-pyrifera_M_contig8592.20026.1|Name=mRNA_M-pyrifera_M_contig8592.20026.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2941bp|location=Sequence derived from alignment at M-pyrifera_M_contig8592:5669..8609+ (Macrocystis pyrifera P11B4 male) CCGTGGAAAAACAAGCAACCGGAGATGCGGCATAGCGTTGTAGAGTTGCA
CTGCGGTAACGCAATCAGGTGAGGGGCAGGTCGAAGTCATCTCTTTCTTC
GTGTTTCGTTTTGGAAGAAGGCGGGCGCGAGGGCGGGGTACGGTAGGATG
GGGTGGAGGGGGGGGCAGGGGATACGGCGCGTTATGCTTCGTTTTTGGTG
CAGTGGGGAGTTCCCGCTGGCCTGTACGTGGGAGGGGCGGGGGGGCACTC
ATTCGTTGCTTGCCACATTCATTTGGCCACTATCCGCGCATCGTGTTCGA
GACGGAGCACCCTTTCTACTATTTTTCAGACACCTCCAACATTTGGGCGC
TCATGGCGTTTTTTTCCATATACGTGGTATTAGCCTGTAGCGGGGGGCAG
GGTTGGGTGGAGCGGGGGGGGGAGGGGAGGAGGGGATCGCCCGCGTGCGG
CGCACCTTTTATTTTTATGTTCGTGTGTTGAAAAGCTTCCGTGGACCCGG
GGCTATACTGTAATTGCACTGGGATTGACGTGTCTTACCGGCCTTGACGC
TCTCCCGTTCGTGCTCGGCGAGCAGCTTCATGCAGGCTAGGGATGCTTTG
GCTAGTATGCGGGCGGATCACGACAAAAACGGTTGCGGTTTTTTTGCGTT
CACGGTTGTTCGGCCACCCTTGGACTGGGTGGTGTCGCTGTACAACGACA
TCTGCCACCGGCGCTTGCACGGGCATAAAGACACGTGCCCTCAGAAGGTA
AGCATTGGTGGTGGTGGCGGTGGTGGTGGTGATGGAAGTGGTAGAGGTGG
TGGCAGTGGCGGTGTTGTTTAGTGTGGAGGGTGGTGATGGTGGTCGTGAT
GTGGAGTTGGTTGTTATTGTTCTGCCGATGTTGCGTTTGTTGATCTTGCA
CACTCGTGCTTCGTTGGCCGTGAGTCAAGAACTGCGACAGTTTAATCGCG
AACAGGAATATCCGCTGAAATTGCCGAAAACGAAACGGCCTTGCCCAAAA
AAAATTGCGATGAAAATGTCACGCGAAAAATCCTAAGCCGACTACGCCAA
TTGTTAAGATCAAGGTCGGGACACTGTGTATCCCTTGACAGGTTTTCCTG
TTGAGTAGGCACTCGTTGGTACTCGAATGTATTGTTGCCTTAGAGATAGA
AGATCAGCTTCATTCCTTTCATGCACGTGGAGACTGAGGGCAAGACTCGT
GCCTCGCTGGGGAAAACCCCATCTAAGATAGGCCTCCCAAGTGCTACAAA
TACGATCCCAATACCTGAACCCAGGCAATTACCGGGTTTTCAGTCTCGTT
CAAAGGAGTACCACAACACTACTGTTTTGACCTCGTTCCTAGTTGACTGG
GCCCCATGTTTTCTCTTCCGCCGATGGTTTATATTGACGCAAGGGGATTT
CACCGCGGGAGGAGATGCTGATCTATCCCCACGAGGATGGGATGCTTTCG
TACCTCAAGCACGGCTGGAACGGGTGGAGTTCGCCAGGACCCGTGGATGC
ATCGGTCGTCGAGGTGAATGCTTCTTGCTGGCTGTGTTTTGCCTTGCCTT
GCCTTTGCGTGCCTTCCCTTGCCTTGCCTTGCCTTGCCTTGACTTGAACG
AAGGTGTGTGTTCTCTTGCATGTTACAGCAACGACTGATGCTTACTTGCT
GTGTGGTATTAATAGGACACGTCCAAGTCTCTGCGAAGCTATCTGGACAT
CGTTGCGTTCACGGAGGAGGTACCCAAGCTTCGACGGTTCCTGACGACGC
ACTTCTCTGCCCCCGGTGGTGTGCTCTCGAAGGAGGATGAAGACCTTCTC
AACCAACAAGCGGTAAGAGCCTGCAACAGCTTTTTTTACCTTGAGTAAGC
TACCTGGTACCAGTATCTCACAAGGGTGTGTTCGGTAGGGCATGTACTCT
GGGTGTACCCGGGTACCTACCCGAGTATGACACAAAACATCCCGACGAAA
ACAACCAGGTTTGGTACCCGGGTACCCCAGAGTTACCTTGAAAAGACCGT
TATCACACAAGTGGTGGTAAGTAGGGTACGTAGTCGGCATACGCGGGTAC
CTTCCCGAGTATTGCCAAAACCAGCTGGTTTGGTACCCGGTCACCCCAGA
GTTTCCTTGGGTAAACTATATCACAAGGGTGTGCTTGGTAGGGTACGTGC
TCTGGGCGTGCCGGGATACCTACCTGAGTATGATCCAAAGCAATCAGGTT
CGGTATCTGGATATCCCAGAGTTACCTCGAATTGATTGAATCACAAGAGT
GGTTAGTAGGCTTTGTACTCTGAGCGTGCCCGGGTACCTACCCGAGTATG
ACCATACCAACCGGGTTTGGTAACCGGGTACCCCAGAGTATATAAAGGGT
GTGTTCGGTAGGTTTGTGTACTCTGGGCGAACCCGGTTACCTACCCGAGT
ATGACCATGCCAATCAGGATTGGTACCCGAGTACTCCAGAGTATACACCC
TATTAAACACACGCTTGCTGGTAGCGCTAGAAGTACGTCAGCTGTTCTTT
CGGTCAATGTCAACGCTTGCTCCTGCCCCCCCCCCCCACCCCCTATCAGG
GTCCCGACCCAACTACCCAGCTGGATATCGACACCCCCGCCGATTGTCCG
GCTGCTTCGTCGTTCGGCGTCGACTACGGCACGCTCGCTACCTTACGATC
TGTTACGATACCGCACGACCTCTCACGCTACGTGCTACACGATGTCTCAC
GCATCGCACGCTACCGAACGCTATCTTGCACTAAGAGTACCGCACGCTAT
GTTGCACTGCCCCGCGCTGTCTCGCTTTATTGTCGATGCGCGATCTCACG
GTGTGTATACCGCCCGATATCCTACGCTGCCTGAAACAGGTGCAAAATGC
CAACCCAAGGAAGGCGGTCGGCATTTCCGAGTTCAATCCGGAAGAAGTCC
AACGGCTGAACGCGACTATCCAGCTCGACTGGAAGCTCTAC back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig8592:5669..8609+ >mRNA_M-pyrifera_M_contig8592.20026.1 ID=mRNA_M-pyrifera_M_contig8592.20026.1|Name=mRNA_M-pyrifera_M_contig8592.20026.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig8592:5669..8609+ (Macrocystis pyrifera P11B4 male) ATGCGGCATAGCGTTGTAGAGTTGCACTGCGGTAACGCAATCAGATGCGG CATAGCGTTGTAGAGTTGCACTGCGGTAACGCAATCAGCTTCATGCAGGC TAGGGATGCTTTGGCTAGTATGCGGGCGGATCACGACAAAAACGGTTGCG GTTTTTTTGCGTTCACGGTTGTTCGGCCACCCTTGGACTGGGTGGTGTCG CTGTACAACGACATCTGCCACCGGCGCTTGCACGGGCATAAAGACACGTG CCCTCAGAAGCTTCATGCAGGCTAGGGATGCTTTGGCTAGTATGCGGGCG GATCACGACAAAAACGGTTGCGGTTTTTTTGCGTTCACGGTTGTTCGGCC ACCCTTGGACTGGGTGGTGTCGCTGTACAACGACATCTGCCACCGGCGCT TGCACGGGCATAAAGACACGTGCCCTCAGAAGGGGATTTCACCGCGGGAG GAGATGCTGATCTATCCCCACGAGGATGGGATGCTTTCGTACCTCAAGCA CGGCTGGAACGGGTGGAGTTCGCCAGGACCCGTGGATGCATCGGTCGTCG AGGGGATTTCACCGCGGGAGGAGATGCTGATCTATCCCCACGAGGATGGG ATGCTTTCGTACCTCAAGCACGGCTGGAACGGGTGGAGTTCGCCAGGACC CGTGGATGCATCGGTCGTCGAGGACACGTCCAAGTCTCTGCGAAGCTATC TGGACATCGTTGCGTTCACGGAGGAGGTACCCAAGCTTCGACGGTTCCTG ACGACGCACTTCTCTGCCCCCGGTGGTGTGCTCTCGAAGGAGGATGAAGA CCTTCTCAACCAACAAGCGGACACGTCCAAGTCTCTGCGAAGCTATCTGG ACATCGTTGCGTTCACGGAGGAGGTACCCAAGCTTCGACGGTTCCTGACG ACGCACTTCTCTGCCCCCGGTGGTGTGCTCTCGAAGGAGGATGAAGACCT TCTCAACCAACAAGCGGTGCAAAATGCCAACCCAAGGAAGGCGGTCGGCA TTTCCGAGTTCAATCCGGAAGAAGTCCAACGGCTGAACGCGACTATCCAG CTCGACTGGAAGCTCTACGTGCAAAATGCCAACCCAAGGAAGGCGGTCGG CATTTCCGAGTTCAATCCGGAAGAAGTCCAACGGCTGAACGCGACTATCC AGCTCGACTGGAAGCTCTAC back to top
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