mRNA_M-pyrifera_M_contig85861.20015.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85861.20015.1
Unique NamemRNA_M-pyrifera_M_contig85861.20015.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85861.20015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85861contigM-pyrifera_M_contig85861:194..806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue9.9e-22
Seed eggNOG ortholog946362.XP_004989176.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2EJ6E@1,2SPEN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size510
Cds size510
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.6441932-CDS-M-pyrifera_M_contig85861:193..5651622816768.6441932-CDS-M-pyrifera_M_contig85861:193..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85861 194..565 -
1692278167.1791186-CDS-M-pyrifera_M_contig85861:193..5651692278167.1791186-CDS-M-pyrifera_M_contig85861:193..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85861 194..565 -
1622816768.6562726-CDS-M-pyrifera_M_contig85861:668..8061622816768.6562726-CDS-M-pyrifera_M_contig85861:668..806Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85861 669..806 -
1692278167.1950617-CDS-M-pyrifera_M_contig85861:668..8061692278167.1950617-CDS-M-pyrifera_M_contig85861:668..806Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85861 669..806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85861.20015.1prot_M-pyrifera_M_contig85861.20015.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85861 194..806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85861.20015.1

>prot_M-pyrifera_M_contig85861.20015.1 ID=prot_M-pyrifera_M_contig85861.20015.1|Name=mRNA_M-pyrifera_M_contig85861.20015.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
MVRFHAADDYDITNKNTADYLGDTTFLCTGLDSQNKNQVISLYDVRVNTQ
WGQYALCNNDVCVGGKNFTVGHEGSFGLPPFGGQCRHNSDYGNWYSLSGA
ARCNDTVVSNTTSCAWRQVALKKSISLDCLESVGFGEACEADGNTLPFAS
ATQSLYNALNYDDAADGGCP
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mRNA from alignment at M-pyrifera_M_contig85861:194..806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85861.20015.1 ID=mRNA_M-pyrifera_M_contig85861.20015.1|Name=mRNA_M-pyrifera_M_contig85861.20015.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=613bp|location=Sequence derived from alignment at M-pyrifera_M_contig85861:194..806- (Macrocystis pyrifera P11B4 male)
ATGGTGCGATTCCATGCGGCGGACGACTACGACATCACCAACAAGAACAC
TGCCGACTACTTGGGCGACACCACGTTCCTATGCACGGGACTCGACTCAC
AGAACAAGAACCAAGTCATCTCTCTCTACGATGTACGTGTCTTCCTTCTT
CGTCACACCTCCCCCCTCTTTCTCTCTTTTTCACTATTGCACTCGTTCAC
ATCGCTTTATAGAGACGGTTACTTACTTGGCCTAGGTGGAGGTGAACACA
CAGTGGGGCCAGTATGCCCTCTGCAACAACGACGTTTGTGTGGGAGGCAA
GAACTTTACTGTGGGCCACGAGGGTTCTTTTGGCCTCCCCCCTTTCGGTG
GCCAGTGCAGGCACAACAGTGACTACGGAAACTGGTACTCCCTCTCCGGC
GCAGCTCGCTGCAACGACACAGTGGTGTCCAACACCACCAGCTGCGCTTG
GAGGCAGGTGGCCCTCAAGAAGAGCATTTCGCTGGACTGCCTCGAGTCGG
TTGGCTTTGGTGAAGCGTGTGAGGCTGATGGCAATACGCTGCCGTTTGCC
TCTGCGACGCAGAGTCTTTATAATGCGCTCAATTACGACGATGCTGCAGA
CGGCGGCTGCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85861:194..806-

>mRNA_M-pyrifera_M_contig85861.20015.1 ID=mRNA_M-pyrifera_M_contig85861.20015.1|Name=mRNA_M-pyrifera_M_contig85861.20015.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig85861:194..806- (Macrocystis pyrifera P11B4 male)
ATGGTGCGATTCCATGCGGCGGACGACTACGACATCACCAACAAGAACAC
TGCCGACTACTTGGGCGACACCACGTTCCTATGCACGGGACTCGACTCAC
AGAACAAGAACCAAGTCATCTCTCTCTACGATGTACGTATGGTGCGATTC
CATGCGGCGGACGACTACGACATCACCAACAAGAACACTGCCGACTACTT
GGGCGACACCACGTTCCTATGCACGGGACTCGACTCACAGAACAAGAACC
AAGTCATCTCTCTCTACGATGTACGTGTGAACACACAGTGGGGCCAGTAT
GCCCTCTGCAACAACGACGTTTGTGTGGGAGGCAAGAACTTTACTGTGGG
CCACGAGGGTTCTTTTGGCCTCCCCCCTTTCGGTGGCCAGTGCAGGCACA
ACAGTGACTACGGAAACTGGTACTCCCTCTCCGGCGCAGCTCGCTGCAAC
GACACAGTGGTGTCCAACACCACCAGCTGCGCTTGGAGGCAGGTGGCCCT
CAAGAAGAGCATTTCGCTGGACTGCCTCGAGTCGGTTGGCTTTGGTGAAG
CGTGTGAGGCTGATGGCAATACGCTGCCGTTTGCCTCTGCGACGCAGAGT
CTTTATAATGCGCTCAATTACGACGATGCTGCAGACGGCGGCTGCCCCGT
GAACACACAGTGGGGCCAGTATGCCCTCTGCAACAACGACGTTTGTGTGG
GAGGCAAGAACTTTACTGTGGGCCACGAGGGTTCTTTTGGCCTCCCCCCT
TTCGGTGGCCAGTGCAGGCACAACAGTGACTACGGAAACTGGTACTCCCT
CTCCGGCGCAGCTCGCTGCAACGACACAGTGGTGTCCAACACCACCAGCT
GCGCTTGGAGGCAGGTGGCCCTCAAGAAGAGCATTTCGCTGGACTGCCTC
GAGTCGGTTGGCTTTGGTGAAGCGTGTGAGGCTGATGGCAATACGCTGCC
GTTTGCCTCTGCGACGCAGAGTCTTTATAATGCGCTCAATTACGACGATG
CTGCAGACGGCGGCTGCCCC
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