mRNA_M-pyrifera_M_contig8578.20001.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8578.20001.1
Unique NamemRNA_M-pyrifera_M_contig8578.20001.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8578.20001.1 vs. uniprot
Match: A0A6H5KF87_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF87_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 5.430e-62
Identity = 139/321 (43.30%), Postives = 161/321 (50.16%), Query Frame = 1 
Query:    1 VLSYSFVNVNAVERAGNRHKRENMPRWAVVVLDGMEGMLHNNSWKRIVAVAVVL-----------------------------------------------------------------DCLFLPHSIPHQGPALLVTRLTAVFGVILLLDQAFRVGEWVRQGSGPGPLRLPGKGRSVHTKVAGVAVVLHTALVALLHCPLLLSLTCTCCSFVRNALLGDAGE--DSISDGGGG--------------------------------GWRLVGTHGGGGEAGMCMKLDSCTDQLLMLCFTLRLLRCWRLVTLNDTLHDHVNT 666
            VLSYSFVNVNAVER G R K E MP     +L+ ME +L    WK  VA  V+L                                                                 DC  LPHSIPHQGP L+VTRLT   G +LLLDQAF++ EW+ QG+GPGPL+L G G+S+HTKVAGV V+LHT +VALLHCP LLSL C+  SF  +     +G      S GGGG                                G  L    GGGG   MCM++D CTD LLML +TLRL+RCWRLVTLNDTLHDHVNT
Sbjct:  435 VLSYSFVNVNAVERQGKRKKWEKMPPRVARLLEKMEAVLATRWWKHTVAAVVLLVKPSGLLISFFSSVDNVLRWKRFRNFNSGATIPKMTRNFFVQREPSLDLADGLFFVFLSSLYMPPDCFILPHSIPHQGPGLMVTRLTLACGAVLLLDQAFQLAEWMHQGAGPGPLKLSG-GKSLHTKVAGVGVILHTLVVALLHCPPLLSLVCSLVSFTWDTFSSYSGSLPSEFSGGGGGPEFSVAEAEGLGGASGAWEGEICGLDEGVFGGGSELGVFKGGGGRERMCMEVDWCTDSLLMLAYTLRLVRCWRLVTLNDTLHDHVNT 754
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BLAST of mRNA_M-pyrifera_M_contig8578.20001.1 vs. uniprot
Match: D8LF40_ECTSI (Putative two-pore calcium channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF40_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 6.240e-52
Identity = 96/158 (60.76%), Postives = 114/158 (72.15%), Query Frame = 1 
Query:    1 VLSYSFVNVNAVERAGNRHKRENMPRWAVVVLDGMEGMLHNNSWKRIVAVAVVLDCLFLPHSIPHQGPALLVTRLTAVFGVILLLDQAFRVGEWVRQGSGPGPLRLPGKGRSVHTKVAGVAVVLHTALVALLHCPLLLSLTCTCCSFVRNALLGDAGE 474
            VLSYSFVNVNAVER G R K E MP     +L+ ME +L    WK  VA  V+LDC  LPHSIPHQGP L+VTRLT   G +LLLDQAF++ EW+ QG+GPGPL+L G G+S+HTKVAGV V+LHT +VALLHCP LLSL C+  SF  +    D+G 
Sbjct:  426 VLSYSFVNVNAVERQGKRKKWEKMPPRVAWLLEKMEAVLATRWWKHTVAAVVLLDCFILPHSIPHQGPGLMVTRLTMACGAVLLLDQAFQLAEWMHQGAGPGPLKLSG-GKSLHTKVAGVGVILHTLVVALLHCPPLLSLVCSLVSFAWDTFSSDSGS 582
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8578.20001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF87_9PHAE5.430e-6243.30Cyclic nucleotide-binding domain-containing protei... [more]
D8LF40_ECTSI6.240e-5260.76Putative two-pore calcium channel (Partial) (Fragm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8578contigM-pyrifera_M_contig8578:5285..9363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.9
Seed ortholog evalue1.3e-45
Seed eggNOG ortholog2880.D8LF40
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ion transport protein
EggNOG OGs2E9E1@1,2SFS9@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size666
Cds size666
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8578.20001.1prot_M-pyrifera_M_contig8578.20001.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8578 5285..9363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.0479083-CDS-M-pyrifera_M_contig8578:5284..54471622816768.0479083-CDS-M-pyrifera_M_contig8578:5284..5447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 5285..5447 +
1692278166.8343015-CDS-M-pyrifera_M_contig8578:5284..54471692278166.8343015-CDS-M-pyrifera_M_contig8578:5284..5447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 5285..5447 +
1622816768.0615566-CDS-M-pyrifera_M_contig8578:6390..65751622816768.0615566-CDS-M-pyrifera_M_contig8578:6390..6575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 6391..6575 +
1692278166.8492358-CDS-M-pyrifera_M_contig8578:6390..65751692278166.8492358-CDS-M-pyrifera_M_contig8578:6390..6575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 6391..6575 +
1622816768.0731862-CDS-M-pyrifera_M_contig8578:7997..82151622816768.0731862-CDS-M-pyrifera_M_contig8578:7997..8215Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 7998..8215 +
1692278166.8614597-CDS-M-pyrifera_M_contig8578:7997..82151692278166.8614597-CDS-M-pyrifera_M_contig8578:7997..8215Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 7998..8215 +
1622816768.0858226-CDS-M-pyrifera_M_contig8578:9263..93631622816768.0858226-CDS-M-pyrifera_M_contig8578:9263..9363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 9264..9363 +
1692278166.873123-CDS-M-pyrifera_M_contig8578:9263..93631692278166.873123-CDS-M-pyrifera_M_contig8578:9263..9363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8578 9264..9363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8578.20001.1

>prot_M-pyrifera_M_contig8578.20001.1 ID=prot_M-pyrifera_M_contig8578.20001.1|Name=mRNA_M-pyrifera_M_contig8578.20001.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=222bp
VLSYSFVNVNAVERAGNRHKRENMPRWAVVVLDGMEGMLHNNSWKRIVAV
AVVLDCLFLPHSIPHQGPALLVTRLTAVFGVILLLDQAFRVGEWVRQGSG
PGPLRLPGKGRSVHTKVAGVAVVLHTALVALLHCPLLLSLTCTCCSFVRN
ALLGDAGEDSISDGGGGGWRLVGTHGGGGEAGMCMKLDSCTDQLLMLCFT
LRLLRCWRLVTLNDTLHDHVNT
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mRNA from alignment at M-pyrifera_M_contig8578:5285..9363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8578.20001.1 ID=mRNA_M-pyrifera_M_contig8578.20001.1|Name=mRNA_M-pyrifera_M_contig8578.20001.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4079bp|location=Sequence derived from alignment at M-pyrifera_M_contig8578:5285..9363+ (Macrocystis pyrifera P11B4 male)
GTGCTGAGCTATTCGTTTGTTAACGTTAACGCGGTGGAGAGGGCGGGCAA
TCGTCATAAAAGGGAGAACATGCCGCGGTGGGCCGTGGTGGTGCTAGACG
GGATGGAGGGGATGCTGCACAACAATTCGTGGAAGCGCATCGTGGCGGTT
GCGGTGGTCCTTGGTTAGTTTATTGCTGCTGTTTGTACCTGACACCATGG
TAAATAGGACCAAATATTGTTGGTAATAATAGCGAATTATAGAGTTTTTG
TGTACCGTAGGTCCTATTTACTATGGTCCCCCGTATTAGGGCCTTCTTAG
GGTACTCTATTAGTATTATTAGGACCTTTAAGTGCAACCTAGGACCGTTT
TAGGGCAAATTAGGACACCGTTTTGGGACAAGTTAGGCCAAAGCAGGACT
CTTTTCGGGCAAATTAGGATCCTTCTCTTACGGGGGACCATTTTAAATAG
GACCAAATATTGTTTCTAAAAAAAGGGAAATGTATAGGTTTTTGTGGGTA
CCGTAGGTCTTATTTACTATGGACCCCCGTAGCAGGGCAAATTAGGACCA
TTTTAGGGCAAATTAGGACTACAGCAGTGCGTGCACTCCCGTCACGGGTA
TAAGCCTGCTGTGTTACAGTAGGTAAAACCTACCGTACAGTACAGCAGTA
GGTGTGATATTTATTGGAATTTGAGTCAGTTTGGGTACACTGCGGTACTA
AAAGGGCTATAACGCGGAGACTACCCCTACCCCTACACCTACCCCTACCC
CTACCCCTACCCCTTCCTAGGATGACTCCGCTGGAGGATGGTATATATAC
AAGTATTCTTTTGGGCGAGACGAGCAGGGTGTACTTGGAAGTAGTTGGTA
GTATTTTTATATGATTATAGCATGTTAACCCTCCCTAACCCCCTGTCAAG
TAGGCCAAAACTGCCAATATAATATTTGGTATTAATAGTTATCGGTGCTT
GGAGTAAGACTTGGATTGTTTGGTACGGTAACAAATGAACCGTGTGACTT
ATCCGTGCCTGTGCCTCTCTTTCTCTTTCTATCTCTCTCTCTGTGTCTCT
CTCTCTCTTGCTCTCTCTCTCTCTCTTTTTCTGTGCGTGTCTCCCTCGCG
GTGCAGACTGCTTGTTTTTGCCCCACAGCATCCCCCACCAAGGCCCTGCC
CTGCTTGTCACGCGGCTGACGGCAGTGTTCGGGGTAATTTTACTGTTGGA
TCAGGCGTTTAGGGTAGGGGAGTGGGTGCGGCAGGGATCGGGCCCGGGTC
CCCTCCGCCTGCCAGGAAAAGGAAGAAGCGTCCACACCAAGGTTAGGGTT
ACGATAGCAGAGATCGACGCTAACGCCTCAGGCCTCAGGGGGGGTGGAGG
CCAGGGAGTGGAATTGGGACGGGGAGGAGGGGGGGGGTGTACTTAATTTC
GTTCATGGCCGTAGTCGTACGATCAAAGACCCTCGCATCCCTACACTATT
CCGGGACGGAGCACGTCAGGTTCTCACTGACCAGATAGATATTGCTTGCA
CCAAGCGCGACGCGCCGTGAGGTGTCCGGCGAGTCTCATGAAGAATGAGC
TGCGTCATACTAAGAACCAGGCGGACTTGCATATGGATGACAGCTTCAAT
GAGTTTATTTATTAGTGTATAGTGTATAGTGTATAGGTGTGGCTACTTCC
AGAGACGGCAATAGGTATATTAATAGTATACTATACTATGCAACTGCCTC
GTGGGTGCCTTACCATAAACGCTACCTGTGATACGATTATTCCTCTTGTA
CGGAGTAGAGGTTCTCCACCCCGCACCAATGATGTATTACCTTGACCACC
AGCTGTGACTGACGTTCAAAAAACAAAATAAAGGTTGTCTAGCCCAAGTA
GTGAGCGGCATGTCATGCTGTACAGTGTCCTTGCCGATGCCAACCCTAAG
CTAGCCCAAGCTAAGCTATATATAGTGGATACGGGGGCCGGGAGGGCACT
CATATGTTGATTGCCTTAGTATTTTGGCCATTGACCACGCGTCCCATTCG
AGACGGAGCGTCCCTCTCGGACACGGAGGGGGGGGGGGCGTACTCATTTT
TTGCTTGCCTTACTCGTTTGGCCATTGCATCGACCCCGCATCCGTTTCGA
GACGTAGCACCGTTCCCACTCCTATTTGAGGCACCTCCAACCTGTGGGCG
CTCATTCCGTTTTTTTCCATATACCGTATATACCGTATTACACAAGGGCG
AGGGGTCGAACGAAAAACAAATACCTGGTAGGCCAGTATTCCAGCTGCGA
GTTTGATTAATCGCTTGTCTCTCCCAATCTTTGAAGACGGAAGCTATGCA
TCGCCCGCGTGTGTCGTGCTTATAGCATACCGGTACGGCATTATCGCATT
CCTCTTGTTCACAGTGAGGGCAGTGAGGGATGCAATAGGCCCGTCACGAC
TGAAACTTAGCGCCACAGAGTAGAGGAGAGCGTACTTCCGCTCGGAAGGA
GGCTGGCAGGCGTTTTTCACTGTCTCTGCCTACTTGCCTTCGCACTTGTA
GCTAGTTGGTGCTTGCGCGCCTTGTAGATCGTTTTGGATTGATTTAGATG
GTGTTAACCCTCGTCGTAAATGTTTTTTTTTATTTTATTTGTGTTTTTTT
TCTGTCGAAATAATCATCATCTATGATATCTCAAGCACCACCCCAAAGAA
TCTCACCGGCCTCTCACTTCCTTCCCCCTCTTTGTTCGTTTATTCGTTTG
TTTGTTGTTGAAGGTGGCGGGGGTGGCCGTGGTGCTACACACGGCGTTGG
TGGCGCTTCTCCACTGCCCCCTCCTCTTGTCCCTGACGTGCACATGCTGC
TCCTTCGTCAGGAATGCGCTCTTAGGCGATGCCGGGGAGGATTCCATAAG
CGATGGCGGGGGGGGGGGCTGGAGGTTGGTGGGGACTCATGGAGGAGGGG
GCGAAGCGGGGATGTGTATGAAGCTTGATAGGTGAGCCACGCGGCAGTCA
CACGGTAGTGGCGGAGGGAGTGGTGCGGGGCGGGGGAGGGGAGGGAGGTG
GTGGTGTTGGTAGCCATGTTGGTAGCGGTGTTGACGGCGATTGTGTTTTT
AGTAGTGTTACCGGGATCGGCAGCGGTGGCATTGCCACCGTTTTGCTGTT
TGGCTTGTAGTCTTCCCGGATTGATACGTGGCTTGTAGTGGTACATGCCT
GGCACATACCCGGTACGTACCTGTCTATTGTTCGGTGTGGCCGAGCGGTG
CGGTGGCCGCACAGAACAGGCGGTTCGTTAACGGGGGGGGAGGGGTAAAT
TGGTCCGGATAGGCTTGTGCGCCACGAGGGAAACTGTATCGGTTGACATT
GGGTGCCCCGGCCTTGGTGTTGGCGGCCTTTCGAGCGAGACAACTCTCGT
GGTTTTGGGGCTGTGACACGCTTCGCCCAGAGCTGATCGGCCTTTTTGTT
TTCGGGCAGCCGCGGCCGTCGCGCAAAGCGATTCGGCAACTCGGCTTGGA
CACATGCTCTGCTGTAATTTCCGAGAACGTGCCGAGAAAGAGGCCCATGA
TTAGATGATGCCGAGAACATGTCGACAATATCCATAACCCTATTGGTACC
AGGTATTAATAGAGGATGCCGAGAAAGTGCCTAGATCATATCGACACAGC
ACCTAGCCTCCTCTTCCTCACCCCTAGCCCCCTTGACGCTGTCATATACA
TGCAAGTCCGCCTCATGAGCGGTTCTTAGCACATAGGATGCAGCCCACCC
TTTTTGCGACTCGCCGAGCAAACATCTCACGGTGCTTCCGCTCTTGGTGC
AAGCCATGCTTGCCTCACCTACCTGGTCGGTGAAAACCCGACGTGTTCCG
TCCCGGCATTGTACAGCAGGGATTCGATGGTCTATGGTTACACGACTACG
GTCATACATGATATCGAGTACGCCCCCCCCGCGACCCTTTCCCCCTCCCC
TCCCCCCCGCCCCTGTTTGTCTGTGTATGTGTTCCTGTGTGTGCCTGTGT
GCCTGTGTGCCTGTTTCAATGCTTTGAAGTTGCACGGACCAGTTGCTGAT
GCTGTGCTTCACGCTGCGTCTTCTTCGCTGCTGGCGTCTGGTGACGCTTA
ACGATACTCTTCACGACCACGTCAACACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8578:5285..9363+

>mRNA_M-pyrifera_M_contig8578.20001.1 ID=mRNA_M-pyrifera_M_contig8578.20001.1|Name=mRNA_M-pyrifera_M_contig8578.20001.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1332bp|location=Sequence derived from alignment at M-pyrifera_M_contig8578:5285..9363+ (Macrocystis pyrifera P11B4 male)
GTGCTGAGCTATTCGTTTGTTAACGTTAACGCGGTGGAGAGGGCGGGCAA
TCGTCATAAAAGGGAGAACATGCCGCGGTGGGCCGTGGTGGTGCTAGACG
GGATGGAGGGGATGCTGCACAACAATTCGTGGAAGCGCATCGTGGCGGTT
GCGGTGGTCCTTGGTGCTGAGCTATTCGTTTGTTAACGTTAACGCGGTGG
AGAGGGCGGGCAATCGTCATAAAAGGGAGAACATGCCGCGGTGGGCCGTG
GTGGTGCTAGACGGGATGGAGGGGATGCTGCACAACAATTCGTGGAAGCG
CATCGTGGCGGTTGCGGTGGTCCTTGACTGCTTGTTTTTGCCCCACAGCA
TCCCCCACCAAGGCCCTGCCCTGCTTGTCACGCGGCTGACGGCAGTGTTC
GGGGTAATTTTACTGTTGGATCAGGCGTTTAGGGTAGGGGAGTGGGTGCG
GCAGGGATCGGGCCCGGGTCCCCTCCGCCTGCCAGGAAAAGGAAGAAGCG
TCCACACCAAGACTGCTTGTTTTTGCCCCACAGCATCCCCCACCAAGGCC
CTGCCCTGCTTGTCACGCGGCTGACGGCAGTGTTCGGGGTAATTTTACTG
TTGGATCAGGCGTTTAGGGTAGGGGAGTGGGTGCGGCAGGGATCGGGCCC
GGGTCCCCTCCGCCTGCCAGGAAAAGGAAGAAGCGTCCACACCAAGGTGG
CGGGGGTGGCCGTGGTGCTACACACGGCGTTGGTGGCGCTTCTCCACTGC
CCCCTCCTCTTGTCCCTGACGTGCACATGCTGCTCCTTCGTCAGGAATGC
GCTCTTAGGCGATGCCGGGGAGGATTCCATAAGCGATGGCGGGGGGGGGG
GCTGGAGGTTGGTGGGGACTCATGGAGGAGGGGGCGAAGCGGGGATGTGT
ATGAAGCTTGATAGGTGGCGGGGGTGGCCGTGGTGCTACACACGGCGTTG
GTGGCGCTTCTCCACTGCCCCCTCCTCTTGTCCCTGACGTGCACATGCTG
CTCCTTCGTCAGGAATGCGCTCTTAGGCGATGCCGGGGAGGATTCCATAA
GCGATGGCGGGGGGGGGGGCTGGAGGTTGGTGGGGACTCATGGAGGAGGG
GGCGAAGCGGGGATGTGTATGAAGCTTGATAGTTGCACGGACCAGTTGCT
GATGCTGTGCTTCACGCTGCGTCTTCTTCGCTGCTGGCGTCTGGTGACGC
TTAACGATACTCTTCACGACCACGTCAACACTTTGCACGGACCAGTTGCT
GATGCTGTGCTTCACGCTGCGTCTTCTTCGCTGCTGGCGTCTGGTGACGC
TTAACGATACTCTTCACGACCACGTCAACACT
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