mRNA_M-pyrifera_M_contig85740.19989.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85740.19989.1
Unique NamemRNA_M-pyrifera_M_contig85740.19989.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85740.19989.1 vs. uniprot
Match: A0A5A8BQI7_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A5A8BQI7_9PLAN)

HSP 1 Score: 554 bits (1427), Expect = 7.310e-185
Identity = 281/286 (98.25%), Postives = 283/286 (98.95%), Query Frame = 1 
Query:    1 NDFDKGVQVASVIRKYAQDFQIIKYAGEAIPLAVFSPATLDNYLEDRGEFPLRVRGSLKHLKLRSILREVYLNSPEMPSGIKKTPAEAREFARQIEGKKLAFRKDVLLSNLRFEQHRRFLGMLREDYLVNVQIIRLSLVDAADPTQVIQSWDVKPAIEKPTAPPAEENQDLAQKMQQLAKQHGLVMWKGYPAVRADLTFSDEVYLGSDHRRFTGFLDRVALGLNPKHVSPVLLATHFPETIGTLVSIQKNRAGGIHSADWLGTNEFDRRDILKRFEQNYTDKLSKY 858
            NDFDKGVQVASVIRKYAQDFQ IKYAGEAIPLAVFSPATLDNYLEDRGEFPLRVRGSL HLKLRSILREVYLNSPEMPSGIKKTPAEAREFARQIEGKKLAFRKDVLLSNLRFEQHRRFLGMLREDYLVNVQI+RLSLVDAADPTQVIQSWDVKPAIEKPTAP AEENQDLAQKMQQLAKQHGLVMWKGYPAVRADLTFSDEVYLGSDHRRFTGFLDRVALGLNPKHVSPVLLATHFPETIGTLVSIQKNRAGGI+SADWLGTNEFDRRDILKRFEQNYTDKLSKY
Sbjct:  254 NDFDKGVQVASVIRKYAQDFQKIKYAGEAIPLAVFSPATLDNYLEDRGEFPLRVRGSLNHLKLRSILREVYLNSPEMPSGIKKTPAEAREFARQIEGKKLAFRKDVLLSNLRFEQHRRFLGMLREDYLVNVQIVRLSLVDAADPTQVIQSWDVKPAIEKPTAPQAEENQDLAQKMQQLAKQHGLVMWKGYPAVRADLTFSDEVYLGSDHRRFTGFLDRVALGLNPKHVSPVLLATHFPETIGTLVSIQKNRAGGIYSADWLGTNEFDRRDILKRFEQNYTDKLSKY 539
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BLAST of mRNA_M-pyrifera_M_contig85740.19989.1 vs. uniprot
Match: A6BYS9_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6BYS9_9PLAN)

HSP 1 Score: 297 bits (760), Expect = 1.470e-88
Identity = 156/289 (53.98%), Postives = 209/289 (72.32%), Query Frame = 1 
Query:    1 NDFDKGVQVASVIRKYAQDFQIIKYAGEAIPLAVFSPATLDNYLEDRGEFPLRVRGSLKHLKL--RSILREVYLNSPEMPSGIKKTPAEAREFARQIEGKKLAFRKDVLLSNLRFEQHRRFLGMLREDYLVNVQIIRLSLVDAADPTQVIQSWDVKPAIEKPTAPPAEENQDLAQKMQQLAKQHGLVMWKGYPAVRADLTF-SDEVYLGSDHRRFTGFLDRVALGLNPKHVSPVLLATHFPETIGTLVSIQKNRAGGIHSADWLGTNEFDRRDILKRFEQNYTDKLSKY 858
            NDFDKG+ ++ ++RK+ Q+FQ I Y GE IP+AVF+ A LD+Y E  GEFPL +RGS + L +  R+ L+  YLNSP++P+GI+KTPAEAREFARQ+EGK+ AFR D++L   R+E++   L     D L+N +II LSLV+ ADP+QVIQ W+++  +         + QDLAQKMQ+LAK+H LV+W  YPAVR DL++ S+   +GSD  RFT  LDRVALGL+P H+SPV +ATHFPETIG L+++  NR GGI +A W G NEFD+R   ++F+Q Y DKL  Y
Sbjct:  253 NDFDKGIHISKLVRKFDQNFQKINYQGEEIPVAVFTGADLDHYREGIGEFPLSIRGSYRPLVIGGRNSLKLNYLNSPDVPTGIQKTPAEAREFARQVEGKEFAFRTDLVLKYPRYEKNPDVLESYN-DLLMNAKIIGLSLVNIADPSQVIQKWEMEQPVVIAGEQADADKQDLAQKMQRLAKEHQLVLWGDYPAVRVDLSYNSNGPIVGSDPVRFTHMLDRVALGLDPNHLSPVFIATHFPETIGRLITVSTNRVGGIRTAKWFGDNEFDKRASQQQFQQAYADKLRHY 540
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BLAST of mRNA_M-pyrifera_M_contig85740.19989.1 vs. uniprot
Match: A0A518A490_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A490_9PLAN)

HSP 1 Score: 268 bits (685), Expect = 2.870e-78
Identity = 147/291 (50.52%), Postives = 195/291 (67.01%), Query Frame = 1 
Query:    1 NDFDKGVQVASVIRKYAQDFQIIKYAGEAIPLAVFSPATLDNYLEDRGEFPLRVRGSLKHLKL---RSILREVYLNSPEMPSGIKKTPAEAREFARQIEGKKLAFRKDVLLSNLRFEQHRRFLGMLREDYLVNVQIIRLSLVDAADPTQVIQSWDVKPAIEKPTAPPAEENQDLAQKMQQLAKQHGLVMWKGYPAVRADLT--FSDEVYLGSDHRRFTGFLDRVALGLNPKHVSPVLLATHFPETIGTLVSIQKNRAGGIHSADWLGTNEFDRRDILKRFEQNYTDKLSKY 858
            NDFDKG+QVA  +RK  QDFQ + Y  E IP+A+F  A+L+NY E  GEFPL +RG+L+   +   ++ +  +++NSP MP GI+KT  EAR FARQIEGK+LAFR+D++L+  RFEQ+   L       L+N +I+ LSLVDAA+P+QV+Q WD++  +E     PA   Q LAQKMQ LA+QH LVM+  YPA+R D T   S+   L SD  RF+  LDR+ALGL+P +V P  +A HFP+TIG  VS   +R G I SA W G NEFD+R   + F+Q Y +KL  Y
Sbjct:  258 NDFDKGIQVARFVRKLHQDFQKLNYQDEEIPVALFMDASLENYNEGIGEFPLMIRGTLRRSSIGGRKNRIDAIFVNSPVMPKGIQKTLEEARVFARQIEGKRLAFREDLVLTRPRFEQNPN-LSTPDNIRLINAKIVSLSLVDAANPSQVLQKWDLQQPVEPAQDQPASGKQGLAQKMQSLARQHQLVMFGDYPAIRIDDTRYTSEGPLLSSDPGRFSRLLDRIALGLDPNYVCPNFIAYHFPDTIGRFVSAGLDRQGNITSAQWFGNNEFDKRSNQQSFQQEYAEKLKAY 547
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85740.19989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5A8BQI7_9PLAN7.310e-18598.25Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A6BYS9_9PLAN1.470e-8853.98Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A518A490_9PLAN2.870e-7850.52Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85740contigM-pyrifera_M_contig85740:1..858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size858
Cds size858
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.4539435-CDS-M-pyrifera_M_contig85740:0..8581622816767.4539435-CDS-M-pyrifera_M_contig85740:0..858Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85740 1..858 -
1692278166.4854217-CDS-M-pyrifera_M_contig85740:0..8581692278166.4854217-CDS-M-pyrifera_M_contig85740:0..858Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85740 1..858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85740.19989.1prot_M-pyrifera_M_contig85740.19989.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85740 1..858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85740.19989.1

>prot_M-pyrifera_M_contig85740.19989.1 ID=prot_M-pyrifera_M_contig85740.19989.1|Name=mRNA_M-pyrifera_M_contig85740.19989.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=286bp
NDFDKGVQVASVIRKYAQDFQIIKYAGEAIPLAVFSPATLDNYLEDRGEF
PLRVRGSLKHLKLRSILREVYLNSPEMPSGIKKTPAEAREFARQIEGKKL
AFRKDVLLSNLRFEQHRRFLGMLREDYLVNVQIIRLSLVDAADPTQVIQS
WDVKPAIEKPTAPPAEENQDLAQKMQQLAKQHGLVMWKGYPAVRADLTFS
DEVYLGSDHRRFTGFLDRVALGLNPKHVSPVLLATHFPETIGTLVSIQKN
RAGGIHSADWLGTNEFDRRDILKRFEQNYTDKLSKY
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mRNA from alignment at M-pyrifera_M_contig85740:1..858-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85740.19989.1 ID=mRNA_M-pyrifera_M_contig85740.19989.1|Name=mRNA_M-pyrifera_M_contig85740.19989.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig85740:1..858- (Macrocystis pyrifera P11B4 male)
AATGATTTTGACAAAGGCGTCCAGGTTGCCAGTGTAATTCGCAAGTATGC
TCAGGATTTTCAGATAATCAAATATGCGGGAGAAGCTATTCCCCTGGCGG
TCTTTTCACCCGCGACTCTGGATAACTATCTGGAAGATCGGGGAGAATTC
CCGTTGCGAGTCAGAGGGAGTTTGAAGCATCTCAAGTTGCGATCGATTTT
GAGGGAAGTCTACCTGAACTCCCCTGAAATGCCCTCCGGAATTAAAAAGA
CTCCTGCAGAAGCACGGGAATTTGCCCGCCAGATCGAAGGCAAGAAGCTG
GCATTCCGCAAAGATGTCCTGTTGTCGAATCTCCGCTTCGAGCAGCATCG
TCGATTTCTTGGCATGCTCAGAGAAGACTACCTGGTGAATGTGCAGATTA
TCCGCCTCTCACTCGTAGACGCTGCAGATCCAACCCAGGTAATTCAATCA
TGGGATGTCAAACCAGCGATCGAAAAGCCGACTGCACCACCGGCTGAAGA
AAATCAGGATCTCGCGCAGAAAATGCAACAGCTGGCCAAACAGCATGGCC
TGGTAATGTGGAAAGGTTATCCTGCTGTTCGAGCTGATCTGACTTTTTCA
GATGAAGTTTATCTGGGTAGCGATCACCGGCGGTTTACCGGGTTTTTAGA
CCGGGTAGCTCTGGGCTTGAATCCAAAGCATGTGAGTCCGGTTCTCCTGG
CGACTCATTTTCCGGAAACCATTGGAACACTCGTCAGTATTCAAAAAAAT
CGGGCTGGCGGAATACATTCTGCAGACTGGCTGGGAACCAATGAATTCGA
CAGACGGGATATTCTTAAGCGTTTCGAGCAGAACTATACGGATAAGCTGA
GCAAGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85740:1..858-

>mRNA_M-pyrifera_M_contig85740.19989.1 ID=mRNA_M-pyrifera_M_contig85740.19989.1|Name=mRNA_M-pyrifera_M_contig85740.19989.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1716bp|location=Sequence derived from alignment at M-pyrifera_M_contig85740:1..858- (Macrocystis pyrifera P11B4 male)
AATGATTTTGACAAAGGCGTCCAGGTTGCCAGTGTAATTCGCAAGTATGC
TCAGGATTTTCAGATAATCAAATATGCGGGAGAAGCTATTCCCCTGGCGG
TCTTTTCACCCGCGACTCTGGATAACTATCTGGAAGATCGGGGAGAATTC
CCGTTGCGAGTCAGAGGGAGTTTGAAGCATCTCAAGTTGCGATCGATTTT
GAGGGAAGTCTACCTGAACTCCCCTGAAATGCCCTCCGGAATTAAAAAGA
CTCCTGCAGAAGCACGGGAATTTGCCCGCCAGATCGAAGGCAAGAAGCTG
GCATTCCGCAAAGATGTCCTGTTGTCGAATCTCCGCTTCGAGCAGCATCG
TCGATTTCTTGGCATGCTCAGAGAAGACTACCTGGTGAATGTGCAGATTA
TCCGCCTCTCACTCGTAGACGCTGCAGATCCAACCCAGGTAATTCAATCA
TGGGATGTCAAACCAGCGATCGAAAAGCCGACTGCACCACCGGCTGAAGA
AAATCAGGATCTCGCGCAGAAAATGCAACAGCTGGCCAAACAGCATGGCC
TGGTAATGTGGAAAGGTTATCCTGCTGTTCGAGCTGATCTGACTTTTTCA
GATGAAGTTTATCTGGGTAGCGATCACCGGCGGTTTACCGGGTTTTTAGA
CCGGGTAGCTCTGGGCTTGAATCCAAAGCATGTGAGTCCGGTTCTCCTGG
CGACTCATTTTCCGGAAACCATTGGAACACTCGTCAGTATTCAAAAAAAT
CGGGCTGGCGGAATACATTCTGCAGACTGGCTGGGAACCAATGAATTCGA
CAGACGGGATATTCTTAAGCGTTTCGAGCAGAACTATACGGATAAGCTGA
GCAAGTACAATGATTTTGACAAAGGCGTCCAGGTTGCCAGTGTAATTCGC
AAGTATGCTCAGGATTTTCAGATAATCAAATATGCGGGAGAAGCTATTCC
CCTGGCGGTCTTTTCACCCGCGACTCTGGATAACTATCTGGAAGATCGGG
GAGAATTCCCGTTGCGAGTCAGAGGGAGTTTGAAGCATCTCAAGTTGCGA
TCGATTTTGAGGGAAGTCTACCTGAACTCCCCTGAAATGCCCTCCGGAAT
TAAAAAGACTCCTGCAGAAGCACGGGAATTTGCCCGCCAGATCGAAGGCA
AGAAGCTGGCATTCCGCAAAGATGTCCTGTTGTCGAATCTCCGCTTCGAG
CAGCATCGTCGATTTCTTGGCATGCTCAGAGAAGACTACCTGGTGAATGT
GCAGATTATCCGCCTCTCACTCGTAGACGCTGCAGATCCAACCCAGGTAA
TTCAATCATGGGATGTCAAACCAGCGATCGAAAAGCCGACTGCACCACCG
GCTGAAGAAAATCAGGATCTCGCGCAGAAAATGCAACAGCTGGCCAAACA
GCATGGCCTGGTAATGTGGAAAGGTTATCCTGCTGTTCGAGCTGATCTGA
CTTTTTCAGATGAAGTTTATCTGGGTAGCGATCACCGGCGGTTTACCGGG
TTTTTAGACCGGGTAGCTCTGGGCTTGAATCCAAAGCATGTGAGTCCGGT
TCTCCTGGCGACTCATTTTCCGGAAACCATTGGAACACTCGTCAGTATTC
AAAAAAATCGGGCTGGCGGAATACATTCTGCAGACTGGCTGGGAACCAAT
GAATTCGACAGACGGGATATTCTTAAGCGTTTCGAGCAGAACTATACGGA
TAAGCTGAGCAAGTAC
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