mRNA_M-pyrifera_M_contig85728.19985.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85728.19985.1
Unique NamemRNA_M-pyrifera_M_contig85728.19985.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85728.19985.1 vs. uniprot
Match: A0A2E3MFR7_9GAMM (DUF4124 domain-containing protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MFR7_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 4.130e-21
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 AEVYKWTDANGKVKYGDKPQHPNATAVDVAPKPPVNNELKQRQT---ETQAKRKQAENQQEIATTDAKAKAEMGKRDAQIEEACKRQQENMATLSEYGARAYTVMSDGETHYLSDEDRKKQIDSTQAFLDKYCKGV 399
            A VYKWTD+ G V YG+ P  PNAT VD+AP P  N  L+Q+Q    E     K+ E ++   T  A   AEM K    +E+ C+  Q+N+  L  +G R YT+ S+G  HY +DE+R+ +I+  +    K+CKGV
Sbjct:   20 AAVYKWTDSQGNVHYGNSPDGPNATRVDIAPPPAPNKNLEQQQXXXXENYDSFKEHEAEKAEQTQQA---AEMEKYKKDVEKLCETYQKNVENLELWGRRVYTMDSEGGRHYFNDEERQARINDIKEKQAKFCKGV 152          
BLAST of mRNA_M-pyrifera_M_contig85728.19985.1 vs. uniprot
Match: UPI0018AA141C (DUF4124 domain-containing protein n=1 Tax=Aliikangiella sp. G2MR2-5 TaxID=2788943 RepID=UPI0018AA141C)

HSP 1 Score: 58.5 bits (140), Expect = 5.040e-8
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = 1
Query:    1 AEVYKWTDANGKVKYGDKPQHPNATAVDVAPKPPVN-NELKQRQTETQA----KRKQAENQQEIATTDAKAKAEMGKRDAQIEEACKRQQENMATLSEYGARAYTVMSDGETHYLSDEDRKKQIDSTQAFLDKYC 390
            ++VYKW D +GKV Y DKPQ  NAT +D+  K  +N N  ++ Q   Q     ++K+ + Q E          +  +     E  C+     + TL     R  T    GE +++SDE+RKK+I+  + F+ + C
Sbjct:   27 SKVYKWVDKDGKVHYSDKPQGKNATELDI--KKDINKNSQREAQNRNQELIDWQKKRLQVQMETEKEQKAXXXKEAREKKAHETKCRLANSQLGTLKAQ-IRILTANEKGEQYFMSDEERKKEINMLETFIKQNC 158          
BLAST of mRNA_M-pyrifera_M_contig85728.19985.1 vs. uniprot
Match: A0A0T6ULN7_9PSED (DUF4124 domain-containing protein n=1 Tax=Pseudomonas sp. TTU2014-080ASC TaxID=1729724 RepID=A0A0T6ULN7_9PSED)

HSP 1 Score: 57.0 bits (136), Expect = 1.390e-7
Identity = 45/128 (35.16%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    1 AEVYKWTDANGKVKYGDKPQHPNATAVDVAPKPPVNNELKQRQTETQAKRKQAENQQEIATTDAKAKAEMGKRDAQIEEACKRQQENMATLSEYGARAYTVMSDGETHYLSDEDRKKQIDSTQAFLDK 384
            AE+Y+WTDANG+V +G +P    A  + V P+    ++L  R+ E +  +     +QE A+  AKA+    KR  Q ++  +R    +AT++E G R +   +DG   Y SDE    Q+DST++ L K
Sbjct:   17 AEIYRWTDANGQVHFGQRPAGQGAEQIQVKPQVVERDQLT-REREARTNQFYDARRQEQASNTAKAREVQQKRAQQCQDLRRR----LATVAE-GGRYFRQEADGTRTYYSDE----QMDSTRSQLHK 134          
BLAST of mRNA_M-pyrifera_M_contig85728.19985.1 vs. uniprot
Match: A0A7C1TX63_9GAMM (DUF4124 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1TX63_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 4.580e-7
Identity = 39/129 (30.23%), Postives = 61/129 (47.29%), Query Frame = 1
Query:    4 EVYKWTDANGKVKYGDKPQHPNATAVDVAPKPPVNNELKQRQTETQAKRKQAENQQEIATTDAKAKAEMGKRDAQIEEACKRQQENMATLSEYGARAYTVMSDGETHYLSDEDRKKQIDSTQAFLDKYC 390
            +VYKWTD+ G + YG++P    A  +D+  K P ++         Q   K  E  Q+     A+ KA   K     E  C   +  +A     G R Y +   GE  YLSD D ++++++ Q  +DK+C
Sbjct:   23 KVYKWTDSEGNIHYGERPPGTQAKEIDIH-KAPSSHNASPPGNSLQETNKLLETLQKERQQKAEKKAAAEKERKTREANCSYSKRRLAGYR-IGGRIYEIDDQGERSYLSDSDIQQRLETAQKEVDKWC 149          
BLAST of mRNA_M-pyrifera_M_contig85728.19985.1 vs. uniprot
Match: A0A1H4PXP0_PSEAG (DUF4124 domain-containing protein n=8 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1H4PXP0_PSEAG)

HSP 1 Score: 54.3 bits (129), Expect = 1.470e-6
Identity = 40/130 (30.77%), Postives = 65/130 (50.00%), Query Frame = 1
Query:    1 AEVYKWTDANGKVKYGDKPQHPNATAVDVAPKPPVNNELKQRQTETQAKRKQAENQQEIATTDAKAKAEMGKRDAQIEEACKRQQENMATLSEYGARAYTVMSDGETHYLSDEDRKKQIDSTQAFLDKYC 390
            AE+Y+WTDANG+V +G +P    A  ++V P+    ++L  R+ E +A R     ++E A   A A     KR     E C+  ++ +A++ E G   Y   +DG+  Y SDE         Q+ + + C
Sbjct:   16 AEIYRWTDANGQVHFGQRPSAAGAQQIEVKPQVVERDQLT-REREERASRFYDARREEQAQASALAAENQAKR----AEECREMRKKLASIPE-GRSYYRTEADGQRSYYSDEHVDTARQQLQSRVSERC 139          
BLAST of mRNA_M-pyrifera_M_contig85728.19985.1 vs. uniprot
Match: UPI00118547C0 (DUF4124 domain-containing protein n=1 Tax=Pleionea sediminis TaxID=2569479 RepID=UPI00118547C0)

HSP 1 Score: 53.9 bits (128), Expect = 2.360e-6
Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = 1
Query:    7 VYKWTDANGKVKYGDKPQHPNATAVDVAPKPPVNNELKQRQTETQAKRKQAENQQEIATTDAKAKAEMGKRDAQIEEACKRQQENMATLSEYGARAYTVMSDGETHYLSDEDRKKQIDSTQAFLDKYC 390
            +YKW DA G  KYGD+P           PK      +K R + + A   +    +E   TDA+   E+ K  AQI +ACK  + NM TL+  G+R   +  DGE   L++E+ +++   TQ  +D YC
Sbjct:   25 LYKWKDAEGNTKYGDRP-----------PKGVPFERIKVRGSNSSAAITEKIEAEENPQTDAQK--EVAKMQAQITQACKIAKTNMETLNS-GSR---IKKDGEDRMLTEEEIEQKKVETQKQIDNYC 135          
BLAST of mRNA_M-pyrifera_M_contig85728.19985.1 vs. uniprot
Match: A0A1G3EB12_9GAMM (DUF4124 domain-containing protein n=1 Tax=Pseudomonadales bacterium RIFCSPLOWO2_12_59_9 TaxID=1802009 RepID=A0A1G3EB12_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 2.870e-6
Identity = 41/133 (30.83%), Postives = 69/133 (51.88%), Query Frame = 1
Query:    1 AEVYKWTDANGKVKYGDKPQHPNATAVDVAPKPPVNNE---LKQRQTETQAKRKQAENQQEIATTDAKAKAEMGKRDAQIEEACKRQQENMATLSEYGARAYTVMSDGETHYLSDEDRKKQIDSTQAFLDKYC 390
            AE+Y+WTDANG+V +G+ PQ     AV +  KPPV      + +RQ  T+        +Q+ A+  A+      ++ A+  + C++ +E  A L ++G R Y   + GE  Y SD++  +     +A L + C
Sbjct:   17 AEIYRWTDANGQVHFGEAPQ---VGAVQIEVKPPVAQHDAAVAERQQRTERFFDARRQEQQQASEKAR------EQQAKTAQECQQLREQFAVL-DHGGRYYKTDAQGEMQYYSDKEIDRARSQLKARLTQRC 139          
BLAST of mRNA_M-pyrifera_M_contig85728.19985.1 vs. uniprot
Match: A0A359DBE3_PSESP (DUF4124 domain-containing protein n=1 Tax=Pseudomonas sp. TaxID=306 RepID=A0A359DBE3_PSESP)

HSP 1 Score: 53.1 bits (126), Expect = 4.010e-6
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    1 AEVYKWTDANGKVKYGDKPQHPNATAVDVAPKPPVNNELKQRQTETQAKRKQAENQQEIATTDAKAKAEMGKRDAQIEEACKRQQENMATLSEYGARAYTVMSDGETHYLSDEDRKKQIDSTQAFL 378
            AE+Y+WTDANG+V +G +P  P A  V+V P+  V  +   R+ E + +R     + E     A+A A   +R A+  + C+  +  +A + E G R + + ++GE  Y SDE    Q+D+ +  L
Sbjct:   16 AEIYRWTDANGQVHFGQRPAVPGAEQVEVTPQV-VERDAATREREARTERFYDARRDE----QAQAAAASAERQAKRAQECRELRGKLARMPE-GRRYFRLEANGERSYYSDE----QLDAARRQL 131          
BLAST of mRNA_M-pyrifera_M_contig85728.19985.1 vs. uniprot
Match: A0A661CAV5_9GAMM (DUF4124 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661CAV5_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 7.820e-6
Identity = 40/130 (30.77%), Postives = 64/130 (49.23%), Query Frame = 1
Query:    1 AEVYKWTDANGKVKYGDKPQHPNATAVDVAPKPPVNNELKQRQTETQAKRKQAENQQEIATTDAKAKAEMGKRDAQIEEACKRQQENMATLSEYGARAYTVMSDGETHYLSDEDRKKQIDSTQAFLDKYC 390
            AEVYKWTD NGKV YGDKP+  +A  + +    PV + + Q + E Q K      QQE    +   K E GK++ Q++  C   ++ +  + +                ++DE+RK +    + ++ KYC
Sbjct:   58 AEVYKWTDENGKVVYGDKPRSSDADKIKIK-SAPVQDPVVQGRNERQNKLLNVM-QQERDERNVLKKEEKGKKEEQMK-ICAEARKELQEIKDASFLYRPTDDPNNPEIITDEERKAEELKYKKYIKKYC 184          
BLAST of mRNA_M-pyrifera_M_contig85728.19985.1 vs. uniprot
Match: M4X4H1_9PSED (Uncharacterized protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=M4X4H1_9PSED)

HSP 1 Score: 52.0 bits (123), Expect = 1.100e-5
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 1
Query:    1 AEVYKWTDANGKVKYGDKPQHPNATAVDVAPKPPVNNELKQRQTETQAKRKQAENQQEIATTDAKAKAEMGKRDAQIEEACKRQQENMATLSEYGARAYTVMSDGETHYLSDEDRKKQIDSTQAFLD 381
            A++Y+WTDA GKV + + P  P A  ++V P+  V  +   R+ E + +R     + E A    KA  +  +  AQ    C R Q ++ TLS  G R +T  SDGE  Y SD     QID+ +  L+
Sbjct:   17 ADIYRWTDAQGKVHFSETPP-PGAQRIEVKPQV-VERDAATREREERTRRFYDARRDEQAAAQTKAVRQQAELSAQ----CARWQHDLNTLS-LGGRYFTKGSDGERTYYSDA----QIDAARRELE 132          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85728.19985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A2E3MFR7_9GAMM4.130e-2141.18DUF4124 domain-containing protein n=1 Tax=Legionel... [more]
UPI0018AA141C5.040e-831.11DUF4124 domain-containing protein n=1 Tax=Aliikang... [more]
A0A0T6ULN7_9PSED1.390e-735.16DUF4124 domain-containing protein n=1 Tax=Pseudomo... [more]
A0A7C1TX63_9GAMM4.580e-730.23DUF4124 domain-containing protein n=1 Tax=Gammapro... [more]
A0A1H4PXP0_PSEAG1.470e-630.77DUF4124 domain-containing protein n=8 Tax=Gammapro... [more]
UPI00118547C02.360e-634.38DUF4124 domain-containing protein n=1 Tax=Pleionea... [more]
A0A1G3EB12_9GAMM2.870e-630.83DUF4124 domain-containing protein n=1 Tax=Pseudomo... [more]
A0A359DBE3_PSESP4.010e-632.54DUF4124 domain-containing protein n=1 Tax=Pseudomo... [more]
A0A661CAV5_9GAMM7.820e-630.77DUF4124 domain-containing protein n=1 Tax=Gammapro... [more]
M4X4H1_9PSED1.100e-534.65Uncharacterized protein n=2 Tax=unclassified Pseud... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85728contigM-pyrifera_M_contig85728:438..857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.3186152-CDS-M-pyrifera_M_contig85728:437..8571622816767.3186152-CDS-M-pyrifera_M_contig85728:437..857Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85728 438..857 -
1692278166.405456-CDS-M-pyrifera_M_contig85728:437..8571692278166.405456-CDS-M-pyrifera_M_contig85728:437..857Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85728 438..857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85728.19985.1prot_M-pyrifera_M_contig85728.19985.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85728 438..857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85728.19985.1

>prot_M-pyrifera_M_contig85728.19985.1 ID=prot_M-pyrifera_M_contig85728.19985.1|Name=mRNA_M-pyrifera_M_contig85728.19985.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
AEVYKWTDANGKVKYGDKPQHPNATAVDVAPKPPVNNELKQRQTETQAKR
KQAENQQEIATTDAKAKAEMGKRDAQIEEACKRQQENMATLSEYGARAYT
VMSDGETHYLSDEDRKKQIDSTQAFLDKYCKGVTPSNTK*
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mRNA from alignment at M-pyrifera_M_contig85728:438..857-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85728.19985.1 ID=mRNA_M-pyrifera_M_contig85728.19985.1|Name=mRNA_M-pyrifera_M_contig85728.19985.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig85728:438..857- (Macrocystis pyrifera P11B4 male)
GCTGAAGTCTACAAGTGGACTGATGCTAATGGCAAAGTGAAGTATGGAGA TAAACCACAGCACCCAAACGCAACAGCTGTTGACGTTGCTCCTAAACCGC CCGTCAATAACGAATTAAAACAACGCCAGACCGAAACTCAAGCTAAGCGC AAACAAGCAGAAAATCAGCAAGAAATTGCCACAACTGATGCTAAAGCCAA AGCCGAAATGGGAAAACGTGACGCGCAAATTGAAGAAGCGTGCAAACGCC AGCAAGAAAACATGGCAACGTTATCAGAATACGGTGCACGCGCTTATACG GTTATGTCAGATGGTGAAACGCATTATCTTTCCGATGAAGACCGAAAAAA ACAAATTGATTCGACTCAAGCGTTTTTAGATAAATACTGCAAAGGCGTTA CGCCCTCAAACACTAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85728:438..857-

>mRNA_M-pyrifera_M_contig85728.19985.1 ID=mRNA_M-pyrifera_M_contig85728.19985.1|Name=mRNA_M-pyrifera_M_contig85728.19985.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig85728:438..857- (Macrocystis pyrifera P11B4 male)
GCTGAAGTCTACAAGTGGACTGATGCTAATGGCAAAGTGAAGTATGGAGA
TAAACCACAGCACCCAAACGCAACAGCTGTTGACGTTGCTCCTAAACCGC
CCGTCAATAACGAATTAAAACAACGCCAGACCGAAACTCAAGCTAAGCGC
AAACAAGCAGAAAATCAGCAAGAAATTGCCACAACTGATGCTAAAGCCAA
AGCCGAAATGGGAAAACGTGACGCGCAAATTGAAGAAGCGTGCAAACGCC
AGCAAGAAAACATGGCAACGTTATCAGAATACGGTGCACGCGCTTATACG
GTTATGTCAGATGGTGAAACGCATTATCTTTCCGATGAAGACCGAAAAAA
ACAAATTGATTCGACTCAAGCGTTTTTAGATAAATACTGCAAAGGCGTTA
CGCCCTCAAACACTAAGTAGGCTGAAGTCTACAAGTGGACTGATGCTAAT
GGCAAAGTGAAGTATGGAGATAAACCACAGCACCCAAACGCAACAGCTGT
TGACGTTGCTCCTAAACCGCCCGTCAATAACGAATTAAAACAACGCCAGA
CCGAAACTCAAGCTAAGCGCAAACAAGCAGAAAATCAGCAAGAAATTGCC
ACAACTGATGCTAAAGCCAAAGCCGAAATGGGAAAACGTGACGCGCAAAT
TGAAGAAGCGTGCAAACGCCAGCAAGAAAACATGGCAACGTTATCAGAAT
ACGGTGCACGCGCTTATACGGTTATGTCAGATGGTGAAACGCATTATCTT
TCCGATGAAGACCGAAAAAAACAAATTGATTCGACTCAAGCGTTTTTAGA
TAAATACTGCAAAGGCGTTACGCCCTCAAACACTAAGTAG
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