mRNA_M-pyrifera_M_contig8568.19976.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig8568.19976.1 vs. uniprot
Match: D7FS52_ECTSI (Geranylgeranyl pyrophosphate synthetase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS52_ECTSI) HSP 1 Score: 199 bits (507), Expect = 2.300e-63 Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 3 Query: 3 VACTAGAILGGASEKDVKNMEIFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEATSKTTYPKLMGMDGARKEARRLVDEAHKALDPYGEKARPLLAIADYIIERQN 326 VACTAGA+LGGAS+KDVKNME+FSESIGLAFQVADDILDCT TSEQLGKTAGKDEA +KTTYPKLMGMDGA+KEARRLVDEAHKAL+PYGEKARPLLAIADYIIER+N Sbjct: 35 VACTAGALLGGASDKDVKNMEVFSESIGLAFQVADDILDCTATSEQLGKTAGKDEAVNKTTYPKLMGMDGAKKEARRLVDEAHKALEPYGEKARPLLAIADYIIERKN 142
BLAST of mRNA_M-pyrifera_M_contig8568.19976.1 vs. uniprot
Match: A0A835ZD72_9STRA (Farnesyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD72_9STRA) HSP 1 Score: 158 bits (399), Expect = 5.710e-45 Identity = 84/108 (77.78%), Postives = 92/108 (85.19%), Query Frame = 3 Query: 3 VACTAGAILGGASEKDVKNMEIFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEATSKTTYPKLMGMDGARKEARRLVDEAHKALDPYGEKARPLLAIADYIIERQN 326 VA AGAILGGAS KDV ME FS++IGLAFQVADDILDCTQT+EQLGKTAGKDEA SKTTY KLMGMDGAR EARRLVD A AL+PYGE+A L A+A +IIER+N Sbjct: 192 VAVCAGAILGGASPKDVAAMETFSDAIGLAFQVADDILDCTQTTEQLGKTAGKDEAVSKTTYVKLMGMDGARAEARRLVDAALGALEPYGERAAALRALAMFIIEREN 299
BLAST of mRNA_M-pyrifera_M_contig8568.19976.1 vs. uniprot
Match: H6WB80_VAULI (Farnesyltransferase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB80_VAULI) HSP 1 Score: 157 bits (398), Expect = 2.730e-44 Identity = 80/107 (74.77%), Postives = 92/107 (85.98%), Query Frame = 3 Query: 6 ACTAGAILGGASEKDVKNMEIFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEATSKTTYPKLMGMDGARKEARRLVDEAHKALDPYGEKARPLLAIADYIIERQN 326 ACT GA+LGGA +V+ +E FSESIGLAFQVADDILDCTQTSEQLGKTAGKDEA SKTTY KL+GMDGARKEA+RLVD+A AL+P+G +A L AIA +IIER+N Sbjct: 243 ACTTGAVLGGAEPSEVEAIERFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEAVSKTTYVKLLGMDGARKEAKRLVDDALAALEPFGSRAEALKAIAHFIIEREN 349
BLAST of mRNA_M-pyrifera_M_contig8568.19976.1 vs. uniprot
Match: A0A1Z5K1N4_FISSO (Geranylgeranyl diphosphate synthase, type II n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1N4_FISSO) HSP 1 Score: 150 bits (379), Expect = 1.540e-41 Identity = 74/108 (68.52%), Postives = 93/108 (86.11%), Query Frame = 3 Query: 3 VACTAGAILGGASEKDVKNMEIFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEATSKTTYPKLMGMDGARKEARRLVDEAHKALDPYGEKARPLLAIADYIIERQN 326 VA +GAILGGAS DV+ +E F+ ++GLAFQVADDILD TQ++E+LGKTAGKDE T KTTYPKL+G+DGAR EA RL+ EA K+L+PYG+KA PLLA+AD+II+R+N Sbjct: 234 VAVASGAILGGASPADVERLEKFALNVGLAFQVADDILDVTQSTEELGKTAGKDENTDKTTYPKLLGLDGARAEAERLIQEAKKSLEPYGDKAVPLLALADFIIDRKN 341
BLAST of mRNA_M-pyrifera_M_contig8568.19976.1 vs. uniprot
Match: A0A7S2V1Y7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y7_9STRA) HSP 1 Score: 147 bits (371), Expect = 3.320e-41 Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 3 Query: 3 VACTAGAILGGASEKDVKNMEIFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEATSKTTYPKLMGMDGARKEARRLVDEAHKALDPYGEKARPLLAIADYIIERQN 326 VA GAI+GGAS++DV E F+E IGLAFQVADDILD T TSE+LGKTAGKD +KTTYPKL+G++G++KEARRL+DEA AL +G+KA PLLAIADYIIER N Sbjct: 153 VAVACGAIIGGASDEDVALCETFAEDIGLAFQVADDILDVTATSEELGKTAGKDVDVNKTTYPKLLGLEGSKKEARRLIDEAKGALSKFGDKATPLLAIADYIIERTN 260
BLAST of mRNA_M-pyrifera_M_contig8568.19976.1 vs. uniprot
Match: A0A6U5JU78_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5JU78_9STRA) HSP 1 Score: 146 bits (368), Expect = 6.390e-40 Identity = 73/108 (67.59%), Postives = 92/108 (85.19%), Query Frame = 3 Query: 3 VACTAGAILGGASEKDVKNMEIFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEATSKTTYPKLMGMDGARKEARRLVDEAHKALDPYGEKARPLLAIADYIIERQN 326 VA +AGAILGGAS ++V+ E F+ IGLAFQVADDILD T S+ LGKTAGKDEAT KTTY KLMG++G++KEARRL+DEA + L+P+GE+A PLLAIAD+I++R+N Sbjct: 232 VAVSAGAILGGASPEEVERCEKFALDIGLAFQVADDILDVTADSQTLGKTAGKDEATDKTTYVKLMGLEGSKKEARRLIDEAKECLEPFGERAAPLLAIADFIVDRKN 339
BLAST of mRNA_M-pyrifera_M_contig8568.19976.1 vs. uniprot
Match: B7FU89_PHATC (Farnesyltranstransferase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FU89_PHATC) HSP 1 Score: 143 bits (361), Expect = 6.710e-39 Identity = 72/108 (66.67%), Postives = 92/108 (85.19%), Query Frame = 3 Query: 3 VACTAGAILGGASEKDVKNMEIFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEATSKTTYPKLMGMDGARKEARRLVDEAHKALDPYGEKARPLLAIADYIIERQN 326 VA +GAI+GGAS ++VK E F+ +IGLAFQVADDILD TQ++E+LGKTAGKDE T KTTYPKL+G+DGAR+EA RLV EA K+L+P+G++A LLA+AD+II R+N Sbjct: 230 VAVASGAIIGGASAEEVKACEQFALNIGLAFQVADDILDVTQSTEELGKTAGKDEDTDKTTYPKLLGLDGAREEAERLVAEAKKSLEPFGDRATALLALADFIINRKN 337
BLAST of mRNA_M-pyrifera_M_contig8568.19976.1 vs. uniprot
Match: F0Y0W2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0W2_AURAN) HSP 1 Score: 142 bits (359), Expect = 1.840e-38 Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 3 Query: 3 VACTAGAILGGASEKDVKNMEIFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEATSKTTYPKLMGMDGARKEARRLVDEAHKALDPYGEKARPLLAIADYIIERQN 326 V+ AGA+L GA++ DV+ E ++ IG+AFQVADDILD T TSE LGKTAGKDE T KTTYPKLMG+DGAR EA RL EA +L PYGEKA PL+AIA YI+ERQN Sbjct: 245 VSVAAGAVLAGAAKDDVRQCETYANDIGIAFQVADDILDVTATSEMLGKTAGKDEDTDKTTYPKLMGLDGARAEADRLYSEAIDSLAPYGEKAVPLIAIAKYIVERQN 352
BLAST of mRNA_M-pyrifera_M_contig8568.19976.1 vs. uniprot
Match: R7QMY9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMY9_CHOCR) HSP 1 Score: 139 bits (350), Expect = 5.370e-38 Identity = 65/108 (60.19%), Postives = 89/108 (82.41%), Query Frame = 3 Query: 3 VACTAGAILGGASEKDVKNMEIFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEATSKTTYPKLMGMDGARKEARRLVDEAHKALDPYGEKARPLLAIADYIIERQN 326 V+C GA++GGASE DV+ + F+ IGLAFQ+ADD+LD TQ++E LGKTAGKDEAT+K TYP+L+G++G+R++A RLV EA + L PYGE+++ LLA+AD+II R N Sbjct: 158 VSCAGGAVIGGASEDDVQRVSDFAVKIGLAFQIADDVLDVTQSTEMLGKTAGKDEATNKATYPRLLGLEGSRQQAERLVAEAKECLAPYGERSKNLLALADFIINRSN 265
BLAST of mRNA_M-pyrifera_M_contig8568.19976.1 vs. uniprot
Match: K0SX40_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SX40_THAOC) HSP 1 Score: 137 bits (344), Expect = 9.140e-38 Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = 3 Query: 3 VACTAGAILGGASEKDVKNMEIFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEATSKTTYPKLMGMDGARKEARRLVDEAHKALDPYGEKARPLLAIADYIIERQN 326 +A AGAILGGA+ +V+ E FS +IGLAFQVADDILDCT +SE LGKTAGKDEA KTTY KL+G++ +++ AR LVDEA L P+GE+A PLLAIADYIIER N Sbjct: 100 IAVAAGAILGGATPAEVEACEKFSFNIGLAFQVADDILDCTASSEDLGKTAGKDEAVDKTTYVKLLGLEQSKQYARDLVDEAKACLAPFGERALPLLAIADYIIERGN 207 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8568.19976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig8568.19976.1 >prot_M-pyrifera_M_contig8568.19976.1 ID=prot_M-pyrifera_M_contig8568.19976.1|Name=mRNA_M-pyrifera_M_contig8568.19976.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp MEIFSESIGLAFQVADDILDCTQTSEQLGKTAGKDEATSKTTYPKLMGMDback to top mRNA from alignment at M-pyrifera_M_contig8568:4795..11309- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig8568.19976.1 ID=mRNA_M-pyrifera_M_contig8568.19976.1|Name=mRNA_M-pyrifera_M_contig8568.19976.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6515bp|location=Sequence derived from alignment at M-pyrifera_M_contig8568:4795..11309- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig8568:4795..11309- >mRNA_M-pyrifera_M_contig8568.19976.1 ID=mRNA_M-pyrifera_M_contig8568.19976.1|Name=mRNA_M-pyrifera_M_contig8568.19976.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig8568:4795..11309- (Macrocystis pyrifera P11B4 male)back to top |