mRNA_M-pyrifera_M_contig8565.19967.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig8565.19967.1 vs. uniprot
Match: A0A6H5KV84_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV84_9PHAE) HSP 1 Score: 452 bits (1164), Expect = 1.260e-142 Identity = 239/301 (79.40%), Postives = 261/301 (86.71%), Query Frame = 1 Query: 1 RAYKEWPWEEDGQKQYEGSLRKVQFVSPVRNAPELSNETRVDEEQRWVSRGHSQATLEIRRKLPDLRDGKRFAVAVRWVMTFDGFCCTLAVFCGTLFFKPSSYAKEIREGCVRGYALSAKRWFAQAEKYAKTHGHVQLRSATSGGSGREG--GGVGNGLGKMSGRVSVLEAMRSSVGSSNSIRLSKCHGYLGEYIYLTREVKRVIQGEAAGDLVLEEDLQMGGGGIPMGQEGAGAGLDGL-EGKRGKGAGPYVSAGPGDLEESSAMSHISVESARTGSWSGSVVGGFGFVDYPAGIPQKQW 894 R +EWPWEEDGQ+QYEGSLRKV F+SPVRNAPELSNETRV+EEQRWVSRGH+QATLEIRR+LP+LRDG+RF VAVRWVM +DGF C+LAVFCGTLF+KPSSYAKEIREGCVRGYALS KRWF QAEKY K HG VQLR + G GG G K SGRV VLEAMRSSVGSSNSI+LSKCH +LGEYIYLTREVKRVIQGEAAGDLVLEEDL +GG GIP+GQEGAGAGLDGL EG+R KG PY+S GDLEESSAMSH++VESAR+GSWSGS+VGGFGFVDYPAGIP KQW Sbjct: 4 RGLEEWPWEEDGQRQYEGSLRKVHFMSPVRNAPELSNETRVEEEQRWVSRGHAQATLEIRRRLPELRDGRRFVVAVRWVMKYDGFGCSLAVFCGTLFYKPSSYAKEIREGCVRGYALSVKRWFVQAEKYVKAHGAVQLRQSKDGXXXXXXXEGGYGK---KTSGRVPVLEAMRSSVGSSNSIQLSKCHKFLGEYIYLTREVKRVIQGEAAGDLVLEEDLTIGGAGIPIGQEGAGAGLDGLKEGRRPKG--PYMS---GDLEESSAMSHVTVESARSGSWSGSIVGGFGFVDYPAGIPPKQW 296
BLAST of mRNA_M-pyrifera_M_contig8565.19967.1 vs. uniprot
Match: D7FJN4_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN4_ECTSI) HSP 1 Score: 376 bits (966), Expect = 1.190e-115 Identity = 209/308 (67.86%), Postives = 231/308 (75.00%), Query Frame = 1 Query: 1 RAYKEWPWEEDGQKQYEGSLRKVQFVSPVRNAPELSNETRVDEEQRWVSRGHSQATLEIRRKLPDLRDGKRFAVAVRWVMTFDGFCCTLAVFCGTLFFKPSSYAKEIREGCVRGYALSAKRWFAQAEKYAKTHGHVQLRSATSGGSG---------REGGGVGNGLGKMSGRVSVLEAMRSSVGSSNSIRLSKCHGYLGEYIYLTREVKRVIQGEAAGDLVLEEDLQMGGGGIPMGQEGAGAGLDGL-EGKRGKGAGPYVSAGPGDLEESSAMSHISVESARTGSWSGSVVGGFGFVDYPAGIPQKQW 894 R +EWPWEEDGQ+QYEGSLRKV F+SPVRNAPELSNETRV+EEQRWVSRGH+QATLEIRR+LP+LRDG+RF VAVRWVM +DGF C+LAVFCGTLF+KPSSYAKEIREGCVRGYALS KRWF QAEKY K HG VQLR + G R+G KMSGRV VKRVIQGEAAGDLVLEEDL++GG GIP+GQEGAGAGLDGL EG+R KG PY+S GDLEESSAMSH++VESAR+GSWSGS+VGGFGFVDYPAGIP KQW Sbjct: 58 RGLEEWPWEEDGQRQYEGSLRKVHFMSPVRNAPELSNETRVEEEQRWVSRGHAQATLEIRRRLPELRDGRRFVVAVRWVMKYDGFGCSLAVFCGTLFYKPSSYAKEIREGCVRGYALSVKRWFVQAEKYVKAHGAVQLRQSKDGXXXXXXXXXXXXRDGK-------KMSGRV----------------------------------VKRVIQGEAAGDLVLEEDLKIGGAGIPIGQEGAGAGLDGLKEGRRPKG--PYMS---GDLEESSAMSHVTVESARSGSWSGSIVGGFGFVDYPAGIPPKQW 319 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8565.19967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig8565.19967.1 >prot_M-pyrifera_M_contig8565.19967.1 ID=prot_M-pyrifera_M_contig8565.19967.1|Name=mRNA_M-pyrifera_M_contig8565.19967.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=298bp RAYKEWPWEEDGQKQYEGSLRKVQFVSPVRNAPELSNETRVDEEQRWVSRback to top mRNA from alignment at M-pyrifera_M_contig8565:3169..10161- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig8565.19967.1 ID=mRNA_M-pyrifera_M_contig8565.19967.1|Name=mRNA_M-pyrifera_M_contig8565.19967.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6993bp|location=Sequence derived from alignment at M-pyrifera_M_contig8565:3169..10161- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig8565:3169..10161- >mRNA_M-pyrifera_M_contig8565.19967.1 ID=mRNA_M-pyrifera_M_contig8565.19967.1|Name=mRNA_M-pyrifera_M_contig8565.19967.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1788bp|location=Sequence derived from alignment at M-pyrifera_M_contig8565:3169..10161- (Macrocystis pyrifera P11B4 male)back to top |