mRNA_M-pyrifera_M_contig85630.19966.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85630.19966.1
Unique NamemRNA_M-pyrifera_M_contig85630.19966.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85630.19966.1 vs. uniprot
Match: A0A517PM68_9PLAN (Internalin-A n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PM68_9PLAN)

HSP 1 Score: 387 bits (995), Expect = 1.300e-128
Identity = 240/241 (99.59%), Postives = 241/241 (100.00%), Query Frame = 1 
Query:   34 IYPHYDITMGDEGFAGLETLTGLKELFVREYTLSDVTVLRLAPLKRLRQLDLSIGDLNSEDCLSVLSELTELESLYFRCNTKLSERVLDYLSGLKQLQSLSLHIDQGDGDGFQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTKSGARKLAEQLPDVTIILNNALVKTPRKTITCHRCVIHDNASVLVPASWTGTSNHASYYLNVREDGWDKILSWSGQLRPLEFNLY 756
            IYP+YDITMGDEGFAGLETLTGLKELFVREYTLSDVTVLRLAPLKRLRQLDLSIGDLNSEDCLSVLSELTELESLYFRCNTKLSERVLDYLSGLKQLQSLSLHIDQGDGDGFQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTKSGARKLAEQLPDVTIILNNALVKTPRKTITCHRCVIHDNASVLVPASWTGTSNHASYYLNVREDGWDKILSWSGQLRPLEFNLY
Sbjct:  310 IYPYYDITMGDEGFAGLETLTGLKELFVREYTLSDVTVLRLAPLKRLRQLDLSIGDLNSEDCLSVLSELTELESLYFRCNTKLSERVLDYLSGLKQLQSLSLHIDQGDGDGFQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTKSGARKLAEQLPDVTIILNNALVKTPRKTITCHRCVIHDNASVLVPASWTGTSNHASYYLNVREDGWDKILSWSGQLRPLEFNLY 550
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85630.19966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A517PM68_9PLAN1.300e-12899.59Internalin-A n=1 Tax=Gimesia chilikensis TaxID=260... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85630contigM-pyrifera_M_contig85630:3..758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score90.9
Seed ortholog evalue9.2e-16
Seed eggNOG ortholog1210884.HG799469_gene14071
KEGG koko:K13730
KEGG Pathwayko05100,map05100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Leucine-rich repeat (LRR) protein
EggNOG OGs2J4IB@203682,COG4886@1,COG4886@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size756
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816766.1446335-CDS-M-pyrifera_M_contig85630:2..7581622816766.1446335-CDS-M-pyrifera_M_contig85630:2..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85630 3..758 +
1692278165.5562217-CDS-M-pyrifera_M_contig85630:2..7581692278165.5562217-CDS-M-pyrifera_M_contig85630:2..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85630 3..758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85630.19966.1prot_M-pyrifera_M_contig85630.19966.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85630 3..758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85630.19966.1

>prot_M-pyrifera_M_contig85630.19966.1 ID=prot_M-pyrifera_M_contig85630.19966.1|Name=mRNA_M-pyrifera_M_contig85630.19966.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=252bp
LAGWTHLEHLEIYPHYDITMGDEGFAGLETLTGLKELFVREYTLSDVTVL
RLAPLKRLRQLDLSIGDLNSEDCLSVLSELTELESLYFRCNTKLSERVLD
YLSGLKQLQSLSLHIDQGDGDGFQHLAGLEDLEFLEVGGNAFNNRAIQYL
APLKNLKTINAQGSAVTKSGARKLAEQLPDVTIILNNALVKTPRKTITCH
RCVIHDNASVLVPASWTGTSNHASYYLNVREDGWDKILSWSGQLRPLEFN
LY
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mRNA from alignment at M-pyrifera_M_contig85630:3..758+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85630.19966.1 ID=mRNA_M-pyrifera_M_contig85630.19966.1|Name=mRNA_M-pyrifera_M_contig85630.19966.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig85630:3..758+ (Macrocystis pyrifera P11B4 male)
CTCGCTGGCTGGACCCATCTTGAACATCTGGAAATATATCCTCATTACGA
TATTACGATGGGAGACGAGGGGTTTGCCGGGCTGGAGACTTTGACGGGGC
TCAAGGAGCTATTTGTAAGGGAGTATACACTATCGGATGTGACTGTACTT
CGACTGGCACCGCTTAAACGGCTGCGGCAACTTGATTTAAGTATCGGAGA
TCTGAATTCTGAAGATTGTCTGTCTGTGTTGTCGGAACTGACTGAACTTG
AATCGCTTTATTTCCGTTGCAATACCAAACTCAGTGAACGGGTGCTGGAT
TATCTTTCCGGTCTGAAACAGTTACAGTCGTTGTCGCTCCACATTGATCA
GGGAGACGGCGATGGATTCCAACATCTTGCAGGATTGGAAGATCTGGAAT
TTCTGGAGGTTGGGGGAAACGCATTTAATAACCGTGCAATACAGTATCTG
GCTCCACTGAAAAACTTGAAAACTATAAATGCACAGGGAAGCGCTGTTAC
TAAGTCAGGAGCCCGGAAGCTGGCAGAACAACTGCCGGATGTGACTATCA
TTCTTAACAACGCATTGGTGAAAACTCCTCGAAAAACAATTACCTGTCAT
CGTTGTGTGATTCACGATAATGCATCTGTGCTGGTTCCTGCAAGTTGGAC
TGGAACCAGCAATCACGCATCATATTATCTTAATGTTCGAGAGGATGGCT
GGGATAAGATACTGAGCTGGTCCGGTCAGCTTCGTCCACTAGAGTTTAAC
TTATAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85630:3..758+

>mRNA_M-pyrifera_M_contig85630.19966.1 ID=mRNA_M-pyrifera_M_contig85630.19966.1|Name=mRNA_M-pyrifera_M_contig85630.19966.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1512bp|location=Sequence derived from alignment at M-pyrifera_M_contig85630:3..758+ (Macrocystis pyrifera P11B4 male)
CTCGCTGGCTGGACCCATCTTGAACATCTGGAAATATATCCTCATTACGA
TATTACGATGGGAGACGAGGGGTTTGCCGGGCTGGAGACTTTGACGGGGC
TCAAGGAGCTATTTGTAAGGGAGTATACACTATCGGATGTGACTGTACTT
CGACTGGCACCGCTTAAACGGCTGCGGCAACTTGATTTAAGTATCGGAGA
TCTGAATTCTGAAGATTGTCTGTCTGTGTTGTCGGAACTGACTGAACTTG
AATCGCTTTATTTCCGTTGCAATACCAAACTCAGTGAACGGGTGCTGGAT
TATCTTTCCGGTCTGAAACAGTTACAGTCGTTGTCGCTCCACATTGATCA
GGGAGACGGCGATGGATTCCAACATCTTGCAGGATTGGAAGATCTGGAAT
TTCTGGAGGTTGGGGGAAACGCATTTAATAACCGTGCAATACAGTATCTG
GCTCCACTGAAAAACTTGAAAACTATAAATGCACAGGGAAGCGCTGTTAC
TAAGTCAGGAGCCCGGAAGCTGGCAGAACAACTGCCGGATGTGACTATCA
TTCTTAACAACGCATTGGTGAAAACTCCTCGAAAAACAATTACCTGTCAT
CGTTGTGTGATTCACGATAATGCATCTGTGCTGGTTCCTGCAAGTTGGAC
TGGAACCAGCAATCACGCATCATATTATCTTAATGTTCGAGAGGATGGCT
GGGATAAGATACTGAGCTGGTCCGGTCAGCTTCGTCCACTAGAGTTTAAC
TTATATCTCGCTGGCTGGACCCATCTTGAACATCTGGAAATATATCCTCA
TTACGATATTACGATGGGAGACGAGGGGTTTGCCGGGCTGGAGACTTTGA
CGGGGCTCAAGGAGCTATTTGTAAGGGAGTATACACTATCGGATGTGACT
GTACTTCGACTGGCACCGCTTAAACGGCTGCGGCAACTTGATTTAAGTAT
CGGAGATCTGAATTCTGAAGATTGTCTGTCTGTGTTGTCGGAACTGACTG
AACTTGAATCGCTTTATTTCCGTTGCAATACCAAACTCAGTGAACGGGTG
CTGGATTATCTTTCCGGTCTGAAACAGTTACAGTCGTTGTCGCTCCACAT
TGATCAGGGAGACGGCGATGGATTCCAACATCTTGCAGGATTGGAAGATC
TGGAATTTCTGGAGGTTGGGGGAAACGCATTTAATAACCGTGCAATACAG
TATCTGGCTCCACTGAAAAACTTGAAAACTATAAATGCACAGGGAAGCGC
TGTTACTAAGTCAGGAGCCCGGAAGCTGGCAGAACAACTGCCGGATGTGA
CTATCATTCTTAACAACGCATTGGTGAAAACTCCTCGAAAAACAATTACC
TGTCATCGTTGTGTGATTCACGATAATGCATCTGTGCTGGTTCCTGCAAG
TTGGACTGGAACCAGCAATCACGCATCATATTATCTTAATGTTCGAGAGG
ATGGCTGGGATAAGATACTGAGCTGGTCCGGTCAGCTTCGTCCACTAGAG
TTTAACTTATAT
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