mRNA_M-pyrifera_M_contig85610.19961.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85610.19961.1
Unique NamemRNA_M-pyrifera_M_contig85610.19961.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85610.19961.1 vs. uniprot
Match: A0A8C5AFW6_GADMO (40S ribosomal protein S27 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5AFW6_GADMO)

HSP 1 Score: 138 bits (348), Expect = 5.400e-41
Identity = 63/84 (75.00%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:   19 LQAASYVTDLLHPDPAVEKRVHKKKRLVQSPNSFFMDVRCPGCLQITTVFSHAQTVVVCPGCATMLCQPTGGRARLTEGSSFRK 270
            +QA     DLLHP P  EKR HKKKRLVQSPNS+FMDV+CPGC +ITTVFSHAQTVV+C GC+T+LCQPTGG+ARLTEG SFR+
Sbjct:    1 MQATRLAKDLLHPTPEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRR 84
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BLAST of mRNA_M-pyrifera_M_contig85610.19961.1 vs. uniprot
Match: A0A0U2VE42_9MAXI (40S ribosomal protein S27 n=2 Tax=Neocopepoda TaxID=116569 RepID=A0A0U2VE42_9MAXI)

HSP 1 Score: 137 bits (345), Expect = 1.420e-40
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:   43 DLLHPDPAVEKRVHKKKRLVQSPNSFFMDVRCPGCLQITTVFSHAQTVVVCPGCATMLCQPTGGRARLTEGSSFRK 270
            DLLHP PA EKR HK KRLVQ PNS+FMDV+CPGC +ITTVFSHAQTVVVC GC+T+LCQPTGGRARLTEG SFRK
Sbjct:    6 DLLHPQPAEEKRKHKLKRLVQHPNSYFMDVKCPGCYRITTVFSHAQTVVVCAGCSTVLCQPTGGRARLTEGCSFRK 81
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BLAST of mRNA_M-pyrifera_M_contig85610.19961.1 vs. uniprot
Match: A0A6P8UJS9_GYMAC (40S ribosomal protein S27 n=18 Tax=Bilateria TaxID=33213 RepID=A0A6P8UJS9_GYMAC)

HSP 1 Score: 137 bits (344), Expect = 2.020e-40
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:   43 DLLHPDPAVEKRVHKKKRLVQSPNSFFMDVRCPGCLQITTVFSHAQTVVVCPGCATMLCQPTGGRARLTEGSSFRK 270
            DLLHP P  EKR HKKKRLVQSPNS+FMDV+CPGC +ITTVFSHAQTVV+C GC+T+LCQPTGG+ARLTEG SFR+
Sbjct:    6 DLLHPSPEEEKRTHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRR 81
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BLAST of mRNA_M-pyrifera_M_contig85610.19961.1 vs. uniprot
Match: H2YUI4_CIOSA (40S ribosomal protein S27 n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YUI4_CIOSA)

HSP 1 Score: 137 bits (344), Expect = 2.020e-40
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:   43 DLLHPDPAVEKRVHKKKRLVQSPNSFFMDVRCPGCLQITTVFSHAQTVVVCPGCATMLCQPTGGRARLTEGSSFRK 270
            DLLHP P  EKR HKKKRLVQSPNS+FMDV+CPGC +ITTVFSHAQTVV+C GC+T+LCQPTGGRARLTEG SFR+
Sbjct:    6 DLLHPSPEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGRARLTEGCSFRR 81
[Close]
BLAST of mRNA_M-pyrifera_M_contig85610.19961.1 vs. uniprot
Match: A0A3B3X6K5_9TELE (40S ribosomal protein S27 n=1 Tax=Poecilia mexicana TaxID=48701 RepID=A0A3B3X6K5_9TELE)

HSP 1 Score: 137 bits (345), Expect = 2.030e-40
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:   16 SLQAASYVTDLLHPDPAVEKRVHKKKRLVQSPNSFFMDVRCPGCLQITTVFSHAQTVVVCPGCATMLCQPTGGRARLTEGSSFRK 270
            +L+  +   DLLHP P  EKR HKKKRLVQSPNS+FMDV+CPGC +ITTVFSHAQTVV+C GC+T+LCQPTGG+ARLTEG SFR+
Sbjct:    9 TLKTLTLAKDLLHPSPEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRR 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig85610.19961.1 vs. uniprot
Match: A0A3Q2QLN4_FUNHE (40S ribosomal protein S27 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2QLN4_FUNHE)

HSP 1 Score: 137 bits (344), Expect = 2.080e-40
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:   28 ASYVTDLLHPDPAVEKRVHKKKRLVQSPNSFFMDVRCPGCLQITTVFSHAQTVVVCPGCATMLCQPTGGRARLTEGSSFRK 270
            +S   DLLHP P  EKR HKKKRLVQSPNS+FMDV+CPGC +ITTVFSHAQTVV+C GC+T+LCQPTGG+ARLTEG SFR+
Sbjct:    2 SSLAKDLLHPSPEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRR 82
[Close]
BLAST of mRNA_M-pyrifera_M_contig85610.19961.1 vs. uniprot
Match: A0A8C6WGH2_9GOBI (40S ribosomal protein S27 n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6WGH2_9GOBI)

HSP 1 Score: 137 bits (345), Expect = 2.290e-40
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:   10 FSSLQAASYVTDLLHPDPAVEKRVHKKKRLVQSPNSFFMDVRCPGCLQITTVFSHAQTVVVCPGCATMLCQPTGGRARLTEGSSFRK 270
            F+    A    DLLHP P  EKR HKKKRLVQSPNS+FMDV+CPGC +ITTVFSHAQTVV+C GC+T+LCQPTGG+ARLTEG SFR+
Sbjct:   11 FAIFFVAQLAKDLLHPSPEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRR 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig85610.19961.1 vs. uniprot
Match: A0A3Q2QN58_FUNHE (40S ribosomal protein S27 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2QN58_FUNHE)

HSP 1 Score: 137 bits (344), Expect = 2.630e-40
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:   19 LQAASYVTDLLHPDPAVEKRVHKKKRLVQSPNSFFMDVRCPGCLQITTVFSHAQTVVVCPGCATMLCQPTGGRARLTEGSSFRK 270
            LQ      DLLHP P  EKR HKKKRLVQSPNS+FMDV+CPGC +ITTVFSHAQTVV+C GC+T+LCQPTGG+ARLTEG SFR+
Sbjct:    7 LQNVILAKDLLHPSPEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRR 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig85610.19961.1 vs. uniprot
Match: A0A3P8UK71_CYNSE (40S ribosomal protein S27 n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3P8UK71_CYNSE)

HSP 1 Score: 137 bits (345), Expect = 3.090e-40
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:   25 AASYVTDLLHPDPAVEKRVHKKKRLVQSPNSFFMDVRCPGCLQITTVFSHAQTVVVCPGCATMLCQPTGGRARLTEGSSFRK 270
            AAS   DLLHP P  EKR HKKKRLVQ PNS+FMDV+CPGC +ITTVFSHAQTVV+C GC+T+LCQPTGG+ARLTEG SFR+
Sbjct:   26 AASLAKDLLHPTPEEEKRRHKKKRLVQCPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRR 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig85610.19961.1 vs. uniprot
Match: A0A672KZX7_SINGR (40S ribosomal protein S27 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672KZX7_SINGR)

HSP 1 Score: 136 bits (343), Expect = 3.520e-40
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:   28 ASYVTDLLHPDPAVEKRVHKKKRLVQSPNSFFMDVRCPGCLQITTVFSHAQTVVVCPGCATMLCQPTGGRARLTEGSSFRK 270
            +S   DLLHP P  EKR HKKKRLVQSPNS+FMDV+CPGC +ITTVFSHAQTVV+C GC+T+LCQPTGG+ARLTEG SFR+
Sbjct:    8 SSLAKDLLHPTPEEEKRRHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRR 88
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85610.19961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C5AFW6_GADMO5.400e-4175.0040S ribosomal protein S27 n=1 Tax=Gadus morhua Tax... [more]
A0A0U2VE42_9MAXI1.420e-4082.8940S ribosomal protein S27 n=2 Tax=Neocopepoda TaxI... [more]
A0A6P8UJS9_GYMAC2.020e-4080.2640S ribosomal protein S27 n=18 Tax=Bilateria TaxID... [more]
H2YUI4_CIOSA2.020e-4081.5840S ribosomal protein S27 n=1 Tax=Ciona savignyi T... [more]
A0A3B3X6K5_9TELE2.030e-4072.9440S ribosomal protein S27 n=1 Tax=Poecilia mexican... [more]
A0A3Q2QLN4_FUNHE2.080e-4076.5440S ribosomal protein S27 n=1 Tax=Fundulus heteroc... [more]
A0A8C6WGH2_9GOBI2.290e-4072.4140S ribosomal protein S27 n=1 Tax=Neogobius melano... [more]
A0A3Q2QN58_FUNHE2.630e-4075.0040S ribosomal protein S27 n=1 Tax=Fundulus heteroc... [more]
A0A3P8UK71_CYNSE3.090e-4076.8340S ribosomal protein S27 n=2 Tax=Percomorphaceae ... [more]
A0A672KZX7_SINGR3.520e-4076.5440S ribosomal protein S27 n=1 Tax=Sinocyclocheilus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85610contigM-pyrifera_M_contig85610:2..271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.3e-30
Seed eggNOG ortholog51511.ENSCSAVP00000008994
Preferred namerps27
KEGG koko:K02978
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal small subunit assembly
EggNOG OGsCOG2051@1,KOG1779@2759
Ec32 ortholog description40S ribosomal protein S27
Ec32 orthologEc-03_000590.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size270
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.9734817-CDS-M-pyrifera_M_contig85610:1..2711622816765.9734817-CDS-M-pyrifera_M_contig85610:1..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85610 2..271 -
1692278165.47747-CDS-M-pyrifera_M_contig85610:1..2711692278165.47747-CDS-M-pyrifera_M_contig85610:1..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85610 2..271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85610.19961.1prot_M-pyrifera_M_contig85610.19961.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85610 2..271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85610.19961.1

>prot_M-pyrifera_M_contig85610.19961.1 ID=prot_M-pyrifera_M_contig85610.19961.1|Name=mRNA_M-pyrifera_M_contig85610.19961.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MALFSSLQAASYVTDLLHPDPAVEKRVHKKKRLVQSPNSFFMDVRCPGCL
QITTVFSHAQTVVVCPGCATMLCQPTGGRARLTEGSSFRK
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mRNA from alignment at M-pyrifera_M_contig85610:2..271-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85610.19961.1 ID=mRNA_M-pyrifera_M_contig85610.19961.1|Name=mRNA_M-pyrifera_M_contig85610.19961.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig85610:2..271- (Macrocystis pyrifera P11B4 male)
ATGGCCCTTTTCTCTTCTTTGCAGGCTGCAAGTTACGTGACTGACCTCCT
GCACCCCGACCCAGCTGTGGAGAAGCGTGTCCACAAGAAGAAGAGGCTCG
TTCAATCCCCAAACTCCTTTTTCATGGACGTGCGTTGCCCAGGTTGCCTC
CAAATCACCACCGTCTTCTCCCACGCCCAGACCGTTGTCGTCTGCCCAGG
CTGTGCTACCATGCTCTGCCAACCCACCGGTGGCCGCGCCAGGCTCACCG
AAGGCTCTTCCTTCCGAAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85610:2..271-

>mRNA_M-pyrifera_M_contig85610.19961.1 ID=mRNA_M-pyrifera_M_contig85610.19961.1|Name=mRNA_M-pyrifera_M_contig85610.19961.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig85610:2..271- (Macrocystis pyrifera P11B4 male)
ATGGCCCTTTTCTCTTCTTTGCAGGCTGCAAGTTACGTGACTGACCTCCT
GCACCCCGACCCAGCTGTGGAGAAGCGTGTCCACAAGAAGAAGAGGCTCG
TTCAATCCCCAAACTCCTTTTTCATGGACGTGCGTTGCCCAGGTTGCCTC
CAAATCACCACCGTCTTCTCCCACGCCCAGACCGTTGTCGTCTGCCCAGG
CTGTGCTACCATGCTCTGCCAACCCACCGGTGGCCGCGCCAGGCTCACCG
AAGGCTCTTCCTTCCGAAAGATGGCCCTTTTCTCTTCTTTGCAGGCTGCA
AGTTACGTGACTGACCTCCTGCACCCCGACCCAGCTGTGGAGAAGCGTGT
CCACAAGAAGAAGAGGCTCGTTCAATCCCCAAACTCCTTTTTCATGGACG
TGCGTTGCCCAGGTTGCCTCCAAATCACCACCGTCTTCTCCCACGCCCAG
ACCGTTGTCGTCTGCCCAGGCTGTGCTACCATGCTCTGCCAACCCACCGG
TGGCCGCGCCAGGCTCACCGAAGGCTCTTCCTTCCGAAAG
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