mRNA_M-pyrifera_M_contig85589.19950.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85589.19950.1
Unique NamemRNA_M-pyrifera_M_contig85589.19950.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: UPI00177E4018 (ATP-dependent zinc protease n=1 Tax=Pseudomonas sp. PDM14 TaxID=2769288 RepID=UPI00177E4018)

HSP 1 Score: 61.2 bits (147), Expect = 8.450e-10
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   13 LTGRPFTGALLGFVVAIVFVSPPAFALQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198
            LT +P T       +A++  +PP  A +K+  GW+E   +QP +I VK KLDTGA+TSS+HA
Sbjct:   35 LTVKPITALTSALSLALLCAAPPLLAAEKKVFGWVEEGLIQPDNIAVKMKLDTGARTSSLHA 96          
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: UPI001CE0FBFA (ATP-dependent zinc protease n=1 Tax=Pseudomonas sp. PDM14 TaxID=2769288 RepID=UPI001CE0FBFA)

HSP 1 Score: 56.2 bits (134), Expect = 3.490e-8
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   55 VAIVFVSPPAFALQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198
            +A++  +PP  A +K+  GW+E   +QP +I VK KLDTGA+TSS+HA
Sbjct:    3 LALLCAAPPLLAAEKKVFGWVEEGLIQPDNIAVKMKLDTGARTSSLHA 50          
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A3F2V958_9GAMM (ATP-dependent zinc protease n=2 Tax=unclassified Ketobacter TaxID=2639109 RepID=A0A3F2V958_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 1.140e-7
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   22 RPFTGALLGFVVAIVFVSPPAFA----------LQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198
            R   G +L   ++I+    PA+A           +K  LGW+E+ WL+P  IK K KLDTGAKTSSIHA
Sbjct:    6 RTIVGCIL---LSIIATHSPAYADGKSHDNHEIKEKVILGWLEFMWLKPWQIKTKAKLDTGAKTSSIHA 71          
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A521REV8_9GAMM (Zn_protease domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521REV8_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 4.930e-7
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   22 RPFTGALLGFVVAIVFVSPPAFALQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198
            R     LL  ++ I  V P   + +  R+GW+E A+LQP  ++V+ KLDTGAKTS+IHA
Sbjct:    5 RSMKHGLLAILLTIYGVLP--LSAEPARVGWLEGAYLQPWGVRVRAKLDTGAKTSAIHA 61          
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A1G0JPU3_9GAMM (Zn_protease domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15 TaxID=1798298 RepID=A0A1G0JPU3_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 8.120e-7
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   61 IVFVSPPAFALQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198
            I+  S    A + Q +GW+E A+LQP  ++V+ KLDTGAKTS+IHA
Sbjct:    3 IMVCSTLPLAAEPQTVGWLEGAYLQPWGVRVRAKLDTGAKTSTIHA 48          
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A1G0JYJ4_9GAMM (Zn_protease domain-containing protein n=2 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A1G0JYJ4_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 1.110e-6
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   43 LGFVVAIVFVSPPAFALQKQRL-GWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198
            + F+VA++ +     A  K  + GW+E A+LQP  ++VK KLDTGAKTS+IHA
Sbjct:   19 VAFLVALLLMVTAMPATSKPEIVGWLEGAYLQPWGVRVKAKLDTGAKTSTIHA 71          
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A2K9LPP6_9GAMM (Zn_protease domain-containing protein n=2 Tax=Ketobacter alkanivorans TaxID=1917421 RepID=A0A2K9LPP6_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 4.640e-6
Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 1
Query:   22 RPFTGALLGFVVAIVFVSPPAFAL--------QKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198
            +P T  LL   VA++F++              +K  LGWIE   LQP ++K K KLDTGAKTSSIHA
Sbjct:   37 KPLTRCLL---VALMFMATSQLQAADNSKELSEKVILGWIENVHLQPSNLKAKAKLDTGAKTSSIHA 100          
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: UPI001B3D083C (Uncharacterized protein n=3 Tax=unclassified Methylocaldum TaxID=2622260 RepID=UPI001B3D083C)

HSP 1 Score: 50.4 bits (119), Expect = 7.860e-6
Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   40 LLGFVVAIVFVSPPAFALQKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198
            LL   +AI+     +   +K  +GW+E  +L+P +I++  KLDTGAKTSS+HA
Sbjct:   17 LLTLSIAILAAEAQSAVREKAVMGWLESVFLKPWNIRITAKLDTGAKTSSLHA 69          
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A3L8C8P1_9GAMM (ATP-dependent zinc protease n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3L8C8P1_9GAMM)

HSP 1 Score: 50.4 bits (119), Expect = 9.530e-6
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1
Query:   94 QKQRLGWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198
            +K  LGWIE  +LQP  +K K KLDTGAKTSSIHA
Sbjct:   37 EKLILGWIENIYLQPSGMKTKAKLDTGAKTSSIHA 71          
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Match: A0A2G2LUX9_9GAMM (Zn_protease domain-containing protein n=1 Tax=Methylophaga sp. TaxID=2024840 RepID=A0A2G2LUX9_9GAMM)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   67 FVSPPAFA-LQKQRL---GWIEWAWLQPGHIKVKTKLDTGAKTSSIHA 198
            F+   AFA  Q Q L   GW+E   LQPG+I+++ KLDTGAKTSS+HA
Sbjct:   27 FIYKLAFADEQTQHLITAGWLEGVLLQPGNIRMRAKLDTGAKTSSLHA 74          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85589.19950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
UPI00177E40188.450e-1045.16ATP-dependent zinc protease n=1 Tax=Pseudomonas sp... [more]
UPI001CE0FBFA3.490e-850.00ATP-dependent zinc protease n=1 Tax=Pseudomonas sp... [more]
A0A3F2V958_9GAMM1.140e-744.93ATP-dependent zinc protease n=2 Tax=unclassified K... [more]
A0A521REV8_9GAMM4.930e-745.76Zn_protease domain-containing protein n=1 Tax=Gamm... [more]
A0A1G0JPU3_9GAMM8.120e-752.17Zn_protease domain-containing protein n=1 Tax=Gamm... [more]
A0A1G0JYJ4_9GAMM1.110e-649.06Zn_protease domain-containing protein n=2 Tax=uncl... [more]
A0A2K9LPP6_9GAMM4.640e-646.27Zn_protease domain-containing protein n=2 Tax=Keto... [more]
UPI001B3D083C7.860e-643.40Uncharacterized protein n=3 Tax=unclassified Methy... [more]
A0A3L8C8P1_9GAMM9.530e-668.57ATP-dependent zinc protease n=2 Tax=Gammaproteobac... [more]
A0A2G2LUX9_9GAMM1.530e-556.25Zn_protease domain-containing protein n=1 Tax=Meth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85589contigM-pyrifera_M_contig85589:2..199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.3026478-CDS-M-pyrifera_M_contig85589:1..1991622816765.3026478-CDS-M-pyrifera_M_contig85589:1..199Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85589 2..199 -
1692278165.107195-CDS-M-pyrifera_M_contig85589:1..1991692278165.107195-CDS-M-pyrifera_M_contig85589:1..199Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85589 2..199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85589.19950.1prot_M-pyrifera_M_contig85589.19950.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85589 2..199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85589.19950.1

>prot_M-pyrifera_M_contig85589.19950.1 ID=prot_M-pyrifera_M_contig85589.19950.1|Name=mRNA_M-pyrifera_M_contig85589.19950.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MRRLLTGRPFTGALLGFVVAIVFVSPPAFALQKQRLGWIEWAWLQPGHIK
VKTKLDTGAKTSSIHA
back to top

mRNA from alignment at M-pyrifera_M_contig85589:2..199-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85589.19950.1 ID=mRNA_M-pyrifera_M_contig85589.19950.1|Name=mRNA_M-pyrifera_M_contig85589.19950.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig85589:2..199- (Macrocystis pyrifera P11B4 male)
ATGCGTCGACTATTAACAGGCCGGCCGTTCACCGGTGCCCTGCTCGGTTT CGTCGTCGCTATCGTGTTCGTTTCGCCACCCGCATTCGCGCTGCAGAAGC AGCGTCTCGGCTGGATCGAATGGGCCTGGCTGCAACCGGGCCACATCAAG GTCAAAACGAAACTGGATACCGGTGCGAAAACGAGCTCGATCCATGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85589:2..199-

>mRNA_M-pyrifera_M_contig85589.19950.1 ID=mRNA_M-pyrifera_M_contig85589.19950.1|Name=mRNA_M-pyrifera_M_contig85589.19950.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig85589:2..199- (Macrocystis pyrifera P11B4 male)
ATGCGTCGACTATTAACAGGCCGGCCGTTCACCGGTGCCCTGCTCGGTTT
CGTCGTCGCTATCGTGTTCGTTTCGCCACCCGCATTCGCGCTGCAGAAGC
AGCGTCTCGGCTGGATCGAATGGGCCTGGCTGCAACCGGGCCACATCAAG
GTCAAAACGAAACTGGATACCGGTGCGAAAACGAGCTCGATCCATGCCAT
GCGTCGACTATTAACAGGCCGGCCGTTCACCGGTGCCCTGCTCGGTTTCG
TCGTCGCTATCGTGTTCGTTTCGCCACCCGCATTCGCGCTGCAGAAGCAG
CGTCTCGGCTGGATCGAATGGGCCTGGCTGCAACCGGGCCACATCAAGGT
CAAAACGAAACTGGATACCGGTGCGAAAACGAGCTCGATCCATGCC
back to top