mRNA_M-pyrifera_M_contig85587.19949.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85587.19949.1
Unique NamemRNA_M-pyrifera_M_contig85587.19949.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85587.19949.1 vs. uniprot
Match: A0A7X9KKQ4_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KKQ4_9ACTN)

HSP 1 Score: 214 bits (544), Expect = 4.230e-68
Identity = 100/150 (66.67%), Postives = 122/150 (81.33%), Query Frame = 1
Query:    1 IKLRLGTHCYHHAFHAELWHKRLPELREMDPARLTVAPNPEFEAFVDELADAERAGDTLTKLVGVYRVLLPHLIAAYTFHRNNTASITDAPTIRALDFCLTDDLEEWREGEMMIQSLLADADDIDRAAARQAELEKLMLRAEGVTGAGSV 450
            +K+RLGTHCYHHA+HAELWHKRLPELREM+P RLTV  N   E FV+ L + E A  T+ KLVGVYRV +PH IAAYT+HRNNT+ ITDAPTIR+L+F L D+ ++WR+GEMMIQSL+   D++DRAAA QA+LEKLML A G+ G GS+
Sbjct:   58 VKMRLGTHCYHHAWHAELWHKRLPELREMNPDRLTVPANEAMERFVEALTEPEAADQTIEKLVGVYRVFIPHFIAAYTYHRNNTSEITDAPTIRSLNFALHDEFDDWRDGEMMIQSLIETPDEVDRAAAHQAKLEKLMLEAGGIAGPGSI 207          
BLAST of mRNA_M-pyrifera_M_contig85587.19949.1 vs. uniprot
Match: UPI001AA0A39C (hypothetical protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0A39C)

HSP 1 Score: 206 bits (524), Expect = 5.970e-65
Identity = 97/150 (64.67%), Postives = 122/150 (81.33%), Query Frame = 1
Query:    1 IKLRLGTHCYHHAFHAELWHKRLPELREMDPARLTVAPNPEFEAFVDELADAERAGDTLTKLVGVYRVLLPHLIAAYTFHRNNTASITDAPTIRALDFCLTDDLEEWREGEMMIQSLLADADDIDRAAARQAELEKLMLRAEGVTGAGSV 450
            +KLRLGTHCYHHA+HAELWHKRLPELREM+P RLTV PN E  AFVD +++ E  G+T+ KLVGVYRVL+P  IAAYTFH NNT++ITDAPTIR+L F L D+ E+WR+GEM++QSL+    +++RAAA QA L+ L+L A G+ G GS+
Sbjct:   58 VKLRLGTHCYHHAWHAELWHKRLPELREMNPDRLTVPPNDELVAFVDAMSEPEAPGETIEKLVGVYRVLIPAKIAAYTFHLNNTSTITDAPTIRSLKFVLQDEFEDWRDGEMLLQSLIETPTEVERAAAHQARLQTLLLGAGGIAGPGSI 207          
BLAST of mRNA_M-pyrifera_M_contig85587.19949.1 vs. uniprot
Match: A0A3N5L5I3_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5L5I3_9ACTN)

HSP 1 Score: 204 bits (519), Expect = 3.540e-64
Identity = 98/150 (65.33%), Postives = 120/150 (80.00%), Query Frame = 1
Query:    1 IKLRLGTHCYHHAFHAELWHKRLPELREMDPARLTVAPNPEFEAFVDELADAERAGDTLTKLVGVYRVLLPHLIAAYTFHRNNTASITDAPTIRALDFCLTDDLEEWREGEMMIQSLLADADDIDRAAARQAELEKLMLRAEGVTGAGSV 450
            +KLRLGTHCYHHA+HAELWHKRLPELREM+P RLT  PN E  AFVD + + E    T+ KLVGVYRVL+P  IAAYT+H NNT++ITDAPTIR+L F L D+ ++WR+GEMMIQSL+    ++DRA A QA+L+KLML A G+TG GS+
Sbjct:   58 VKLRLGTHCYHHAWHAELWHKRLPELREMNPERLTAPPNDELVAFVDAMTEPEGPELTIEKLVGVYRVLIPAKIAAYTYHLNNTSTITDAPTIRSLKFALQDEFDDWRDGEMMIQSLIQSEAELDRAIAHQAKLQKLMLAAGGITGPGSI 207          
BLAST of mRNA_M-pyrifera_M_contig85587.19949.1 vs. uniprot
Match: A0A6J4I695_9ACTN (Uncharacterized protein n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4I695_9ACTN)

HSP 1 Score: 204 bits (518), Expect = 4.860e-64
Identity = 98/150 (65.33%), Postives = 119/150 (79.33%), Query Frame = 1
Query:    1 IKLRLGTHCYHHAFHAELWHKRLPELREMDPARLTVAPNPEFEAFVDELADAERAGDTLTKLVGVYRVLLPHLIAAYTFHRNNTASITDAPTIRALDFCLTDDLEEWREGEMMIQSLLADADDIDRAAARQAELEKLMLRAEGVTGAGSV 450
            +KLRLGTHCYHHA+HAEL+HKRLPELREM+P RLT+  N E  AFVD +   E  G+T+ KLVGVYRVL+PH IAAYTFH NNT++ITDAPTIR L   L D+ ++WR+GEMMIQSL+   +++DRAA  QA LEKLML A G+ G GS+
Sbjct:   58 VKLRLGTHCYHHAWHAELFHKRLPELREMNPERLTLPANDELVAFVDAMTAPEGQGETIEKLVGVYRVLIPHKIAAYTFHLNNTSTITDAPTIRTLKLVLQDEFDDWRDGEMMIQSLIETPEEVDRAARHQASLEKLMLAAGGIAGPGSI 207          
BLAST of mRNA_M-pyrifera_M_contig85587.19949.1 vs. uniprot
Match: A0A7V9PCN8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9PCN8_9ACTN)

HSP 1 Score: 204 bits (518), Expect = 5.180e-64
Identity = 99/150 (66.00%), Postives = 119/150 (79.33%), Query Frame = 1
Query:    1 IKLRLGTHCYHHAFHAELWHKRLPELREMDPARLTVAPNPEFEAFVDELADAERAGDTLTKLVGVYRVLLPHLIAAYTFHRNNTASITDAPTIRALDFCLTDDLEEWREGEMMIQSLLADADDIDRAAARQAELEKLMLRAEGVTGAGSV 450
            IK+RLGTHCYHHA+HA+LW+KRLPELREM+P RLTV  N E   FVD L + E    TL KLVGVYRVL+PH +AAYT+HRN T+ ITDAPTIR+L F L D+ E+WREGEM+IQSL+   +D+DRAAA QA LEKL+L A G+ G GS+
Sbjct:   58 IKMRLGTHCYHHAWHADLWNKRLPELREMNPDRLTVPANDELVTFVDALTEPEAPELTLEKLVGVYRVLIPHKVAAYTYHRNGTSRITDAPTIRSLTFILQDEQEDWREGEMLIQSLIETPEDVDRAAAHQARLEKLVLAAGGIAGPGSI 207          
BLAST of mRNA_M-pyrifera_M_contig85587.19949.1 vs. uniprot
Match: A0A6I3I074_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3I074_9ACTN)

HSP 1 Score: 202 bits (515), Expect = 1.430e-63
Identity = 99/150 (66.00%), Postives = 117/150 (78.00%), Query Frame = 1
Query:    1 IKLRLGTHCYHHAFHAELWHKRLPELREMDPARLTVAPNPEFEAFVDELADAERAGDTLTKLVGVYRVLLPHLIAAYTFHRNNTASITDAPTIRALDFCLTDDLEEWREGEMMIQSLLADADDIDRAAARQAELEKLMLRAEGVTGAGSV 450
            IKLRLGTHCY HA+HAELWHKRLPELREM+PARLTV  N     FVD + + E A  T+ KLVGVYRV +PH I+AYT+H NNT+ ITD PTIR+L F L D+ E+WR+GEM+IQSLL   D +DRAAA QA+LEKLML A G+ G GS+
Sbjct:   58 IKLRLGTHCYKHAWHAELWHKRLPELREMNPARLTVPANDALVRFVDAMTEPEDASLTIEKLVGVYRVYIPHFISAYTYHLNNTSEITDMPTIRSLKFILQDEFEDWRDGEMLIQSLLETPDHVDRAAAHQAKLEKLMLEAGGIAGHGSI 207          
BLAST of mRNA_M-pyrifera_M_contig85587.19949.1 vs. uniprot
Match: A0A7W0LTS3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0LTS3_9ACTN)

HSP 1 Score: 202 bits (515), Expect = 1.430e-63
Identity = 94/150 (62.67%), Postives = 120/150 (80.00%), Query Frame = 1
Query:    1 IKLRLGTHCYHHAFHAELWHKRLPELREMDPARLTVAPNPEFEAFVDELADAERAGDTLTKLVGVYRVLLPHLIAAYTFHRNNTASITDAPTIRALDFCLTDDLEEWREGEMMIQSLLADADDIDRAAARQAELEKLMLRAEGVTGAGSV 450
            +K+RLGTHCYHHA+HA+LW++RLPELREM+P RLTV PN E  AF++ + + E  G T+ KLVGVYRVL+PH IAAYT+H NNT+ ITDAPTIR+L   L D+ E+WR+GEMMIQSL+   +++DRA A  A+LEKLML A G+ G GS+
Sbjct:   58 VKMRLGTHCYHHAWHADLWNRRLPELREMNPDRLTVPPNDELVAFIEAMTEPEAIGQTIEKLVGVYRVLIPHKIAAYTYHMNNTSRITDAPTIRSLKMILQDEFEDWRDGEMMIQSLIETDEEVDRATAHGAKLEKLMLAAGGIAGPGSI 207          
BLAST of mRNA_M-pyrifera_M_contig85587.19949.1 vs. uniprot
Match: A0A3N5KC60_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5KC60_9ACTN)

HSP 1 Score: 202 bits (514), Expect = 2.100e-63
Identity = 97/150 (64.67%), Postives = 119/150 (79.33%), Query Frame = 1
Query:    1 IKLRLGTHCYHHAFHAELWHKRLPELREMDPARLTVAPNPEFEAFVDELADAERAGDTLTKLVGVYRVLLPHLIAAYTFHRNNTASITDAPTIRALDFCLTDDLEEWREGEMMIQSLLADADDIDRAAARQAELEKLMLRAEGVTGAGSV 450
            +K+RLGTHCY HA+HAELWHKRLPELREM+P RLTVA N E  AFVD + + E    T+ KLVGVYRVL+PH IAAYT+H NNT++ITDAPTIR+L   L D+ ++WR+GEM+IQSL+   D++DRAA  QA LEKLML A G+ G GS+
Sbjct:   58 VKMRLGTHCYKHAWHAELWHKRLPELREMNPERLTVAANDELVAFVDAMTEPEAPELTIEKLVGVYRVLIPHKIAAYTYHLNNTSTITDAPTIRSLKLILQDEFDDWRDGEMLIQSLIETDDEVDRAAKHQARLEKLMLAAGGIAGPGSI 207          
BLAST of mRNA_M-pyrifera_M_contig85587.19949.1 vs. uniprot
Match: A0A7C1UI53_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UI53_9ACTN)

HSP 1 Score: 199 bits (507), Expect = 2.660e-62
Identity = 96/150 (64.00%), Postives = 119/150 (79.33%), Query Frame = 1
Query:    1 IKLRLGTHCYHHAFHAELWHKRLPELREMDPARLTVAPNPEFEAFVDELADAERAGDTLTKLVGVYRVLLPHLIAAYTFHRNNTASITDAPTIRALDFCLTDDLEEWREGEMMIQSLLADADDIDRAAARQAELEKLMLRAEGVTGAGSV 450
            +KL+LGTHCYHHA+HAEL HKRLPELREM P RLTV PN E  AFV+ + + E A  T+ KLVGVYRVL+PH IAAYT+HRNNT++ITDAPTIR+LD  L D+ ++WR+GEMMIQSL+   + + RAA  QA LE+LM+ A G+ G GS+
Sbjct:   58 VKLKLGTHCYHHAWHAELMHKRLPELREMKPERLTVPPNDELVAFVEAMTEPEAAELTIEKLVGVYRVLIPHKIAAYTYHRNNTSTITDAPTIRSLDLMLRDEFDDWRDGEMMIQSLIETPEHVRRAADHQARLEELMVAAGGIAGPGSI 207          
BLAST of mRNA_M-pyrifera_M_contig85587.19949.1 vs. uniprot
Match: A0A7V9B2C1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9B2C1_9ACTN)

HSP 1 Score: 199 bits (506), Expect = 4.850e-62
Identity = 94/150 (62.67%), Postives = 121/150 (80.67%), Query Frame = 1
Query:    1 IKLRLGTHCYHHAFHAELWHKRLPELREMDPARLTVAPNPEFEAFVDELADAERAGDTLTKLVGVYRVLLPHLIAAYTFHRNNTASITDAPTIRALDFCLTDDLEEWREGEMMIQSLLADADDIDRAAARQAELEKLMLRAEGVTGAGSV 450
            +KLRLGTHCYHHA+HAEL+HKRLPELREM+P RLTV PNPE EAFV  L + E    T+ KLVGVYRVL+P  IAAYT+HRNNT+++TDAPTIR+L+F L D+ ++WR+GEMM+QSL+   ++I RAA  Q  L++L+L A G+ G G++
Sbjct:   58 VKLRLGTHCYHHAWHAELFHKRLPELREMNPDRLTVPPNPEIEAFVAALTEPEARDQTIEKLVGVYRVLIPAKIAAYTYHRNNTSTVTDAPTIRSLNFALHDEFDDWRDGEMMLQSLIDSPEEIRRAADHQVRLQELLLAAGGIAGPGTL 207          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85587.19949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KKQ4_9ACTN4.230e-6866.67Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
UPI001AA0A39C5.970e-6564.67hypothetical protein n=1 Tax=Rhabdothermincola sed... [more]
A0A3N5L5I3_9ACTN3.540e-6465.33Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A6J4I695_9ACTN4.860e-6465.33Uncharacterized protein n=1 Tax=uncultured Acidimi... [more]
A0A7V9PCN8_9ACTN5.180e-6466.00Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A6I3I074_9ACTN1.430e-6366.00Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A7W0LTS3_9ACTN1.430e-6362.67Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A3N5KC60_9ACTN2.100e-6364.67Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7C1UI53_9ACTN2.660e-6264.00Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A7V9B2C1_9ACTN4.850e-6262.67Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85587contigM-pyrifera_M_contig85587:410..859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.0
Seed ortholog evalue8.5e-09
Seed eggNOG ortholog661478.OP10G_3097
KEGG rclassRC00002,RC00428
KEGG koko:K11529
KEGG ReactionR08572
KEGG Pathwayko00030,ko00260,ko00561,ko00630,ko00680,ko01100,ko01120,ko01130,ko01200,map00030,map00260,map00561,map00630,map00680,map01100,map01120,map01130,map01200
KEGG ModuleM00346
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF455)
EggNOG OGsCOG2833@1,COG2833@2
EC2.7.1.165
COG Functional cat.I
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size450
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.222103-CDS-M-pyrifera_M_contig85587:409..8591622816765.222103-CDS-M-pyrifera_M_contig85587:409..859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85587 410..859 -
1692278165.0918572-CDS-M-pyrifera_M_contig85587:409..8591692278165.0918572-CDS-M-pyrifera_M_contig85587:409..859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85587 410..859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85587.19949.1prot_M-pyrifera_M_contig85587.19949.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85587 410..859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85587.19949.1

>prot_M-pyrifera_M_contig85587.19949.1 ID=prot_M-pyrifera_M_contig85587.19949.1|Name=mRNA_M-pyrifera_M_contig85587.19949.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
IKLRLGTHCYHHAFHAELWHKRLPELREMDPARLTVAPNPEFEAFVDELA
DAERAGDTLTKLVGVYRVLLPHLIAAYTFHRNNTASITDAPTIRALDFCL
TDDLEEWREGEMMIQSLLADADDIDRAAARQAELEKLMLRAEGVTGAGSV
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mRNA from alignment at M-pyrifera_M_contig85587:410..859-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85587.19949.1 ID=mRNA_M-pyrifera_M_contig85587.19949.1|Name=mRNA_M-pyrifera_M_contig85587.19949.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig85587:410..859- (Macrocystis pyrifera P11B4 male)
ATCAAGCTGCGCCTCGGTACCCACTGCTATCACCATGCGTTCCACGCCGA GCTCTGGCACAAGCGCCTCCCCGAGCTGCGTGAGATGGATCCTGCTCGTC TCACCGTGGCGCCGAACCCCGAGTTCGAGGCCTTCGTCGACGAGTTGGCC GACGCCGAACGGGCAGGCGACACGCTGACCAAGCTCGTCGGTGTGTATCG AGTGCTCCTGCCGCACCTGATCGCCGCGTACACGTTCCATCGCAACAACA CCGCGTCGATCACCGATGCCCCGACGATCCGCGCTCTCGACTTCTGTCTC ACCGACGATCTCGAGGAGTGGCGTGAGGGGGAAATGATGATTCAGAGCCT GCTGGCCGACGCCGACGACATCGATCGTGCGGCCGCCCGCCAGGCCGAGC TCGAGAAGCTGATGCTGAGGGCCGAAGGTGTCACCGGGGCCGGGTCGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85587:410..859-

>mRNA_M-pyrifera_M_contig85587.19949.1 ID=mRNA_M-pyrifera_M_contig85587.19949.1|Name=mRNA_M-pyrifera_M_contig85587.19949.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig85587:410..859- (Macrocystis pyrifera P11B4 male)
ATCAAGCTGCGCCTCGGTACCCACTGCTATCACCATGCGTTCCACGCCGA
GCTCTGGCACAAGCGCCTCCCCGAGCTGCGTGAGATGGATCCTGCTCGTC
TCACCGTGGCGCCGAACCCCGAGTTCGAGGCCTTCGTCGACGAGTTGGCC
GACGCCGAACGGGCAGGCGACACGCTGACCAAGCTCGTCGGTGTGTATCG
AGTGCTCCTGCCGCACCTGATCGCCGCGTACACGTTCCATCGCAACAACA
CCGCGTCGATCACCGATGCCCCGACGATCCGCGCTCTCGACTTCTGTCTC
ACCGACGATCTCGAGGAGTGGCGTGAGGGGGAAATGATGATTCAGAGCCT
GCTGGCCGACGCCGACGACATCGATCGTGCGGCCGCCCGCCAGGCCGAGC
TCGAGAAGCTGATGCTGAGGGCCGAAGGTGTCACCGGGGCCGGGTCGGTC
ATCAAGCTGCGCCTCGGTACCCACTGCTATCACCATGCGTTCCACGCCGA
GCTCTGGCACAAGCGCCTCCCCGAGCTGCGTGAGATGGATCCTGCTCGTC
TCACCGTGGCGCCGAACCCCGAGTTCGAGGCCTTCGTCGACGAGTTGGCC
GACGCCGAACGGGCAGGCGACACGCTGACCAAGCTCGTCGGTGTGTATCG
AGTGCTCCTGCCGCACCTGATCGCCGCGTACACGTTCCATCGCAACAACA
CCGCGTCGATCACCGATGCCCCGACGATCCGCGCTCTCGACTTCTGTCTC
ACCGACGATCTCGAGGAGTGGCGTGAGGGGGAAATGATGATTCAGAGCCT
GCTGGCCGACGCCGACGACATCGATCGTGCGGCCGCCCGCCAGGCCGAGC
TCGAGAAGCTGATGCTGAGGGCCGAAGGTGTCACCGGGGCCGGGTCGGTC
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