mRNA_M-pyrifera_M_contig85557.19945.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85557.19945.1
Unique NamemRNA_M-pyrifera_M_contig85557.19945.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85557.19945.1 vs. uniprot
Match: L8H192_ACACA (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H192_ACACA)

HSP 1 Score: 75.1 bits (183), Expect = 1.280e-15
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 QNFEIVMRAMGGVRDDGIEKCVEAIEAEDLDTLMKYIYRGMADERFAGGSLLKWHQHTLAKGGMSCIVRAITDRKGV 231
            Q    V+  +  V+D  ++K ++A+   DLDTLMKYIYRG+ D   +  SLLKWH+    KGG+ CIVRA+ +RK +
Sbjct:   52 QQIRAVVNVLTSVKDADMQKNIDALSPTDLDTLMKYIYRGLEDGENST-SLLKWHEAVTKKGGLGCIVRALAERKAL 127          
BLAST of mRNA_M-pyrifera_M_contig85557.19945.1 vs. uniprot
Match: D3BAU2_POLPP (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BAU2_POLPP)

HSP 1 Score: 74.7 bits (182), Expect = 2.780e-15
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 QNFEIVMRAMGGVRDDGIEKCVEAIEAEDLDTLMKYIYRGMA----DERFAGGSLLKWHQHTLAKGGMSCIVRAITDRKGV 231
            QN  IV+  +  +++  I+ C+E+++A+ LD LMKYIYRG+A     +        KW++ TL K GM C+VRAI++RK V
Sbjct:   65 QNAAIVINVLSNIKEKEIDGCLESLDADQLDILMKYIYRGLAAAATSDNTNAALFFKWYEATLKKAGMGCVVRAISERKTV 145          
BLAST of mRNA_M-pyrifera_M_contig85557.19945.1 vs. uniprot
Match: F4QBJ7_CAVFA (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QBJ7_CAVFA)

HSP 1 Score: 70.9 bits (172), Expect = 7.920e-14
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 QNFEIVMRAMGGVRDDGIEKCVEAIEAEDLDTLMKYIYRGMADERFAGGSLLKWHQHTLAKGGMSCIVRAITDRKGV 231
            QN  +V+  +G V++  ++ CVE ++A+ LD LMKYIYRG+A    +     KW + TL KGG+  +VRAI++RK V
Sbjct:   65 QNSAVVVGLLGQVKEKDVDACVERLDADQLDILMKYIYRGLATGDNSA-IFFKWFEATLKKGGIGSVVRAISERKTV 140          
BLAST of mRNA_M-pyrifera_M_contig85557.19945.1 vs. uniprot
Match: UPI000644EC78 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644EC78)

HSP 1 Score: 70.9 bits (172), Expect = 8.100e-14
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 QNFEIVMRAMGGVRDDGIEKCVEAIEAEDLDTLMKYIYRGMADERFAGGSLLKWHQHTLAKGGMSCIVRAITDRKGV 231
            QN   V+  +  +++  ++ CV  ++ + LD LMKYIYRG+A          KW++ TL K GM C+VRAI++RK V
Sbjct:   65 QNATAVIGVLSAIKEKDVDGCVNQLDDDQLDILMKYIYRGLATGDNNSAIFFKWYEATLKKSGMGCVVRAISERKTV 141          
BLAST of mRNA_M-pyrifera_M_contig85557.19945.1 vs. uniprot
Match: A0A152A6H4_9MYCE (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A6H4_9MYCE)

HSP 1 Score: 68.9 bits (167), Expect = 4.470e-13
Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 NFEIVMRAMGGVRDDGIEKCVEAIEAEDLDTLMKYIYRGMADERFAGGSLLKWHQHTLAKGGMSCIVRAITDRKGV 231
            N +IV++ + G ++  I+  V++++++ LD LMKYIYR +         L KWH+ TL KGG+  I+R I+++K V
Sbjct:   65 NADIVIKLLIGFKEKDIDAAVDSLDSDQLDVLMKYIYRALGTTTETSSLLFKWHESTLKKGGLGAIMRVISEKKTV 140          
BLAST of mRNA_M-pyrifera_M_contig85557.19945.1 vs. uniprot
Match: A0A8J4UWY0_9MYCE (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UWY0_9MYCE)

HSP 1 Score: 68.2 bits (165), Expect = 8.350e-13
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 QNFEIVMRAMGGVRDDGIEKCVEAIEAEDLDTLMKYIYRGMADERFAGGS---LLKWHQHTLAKGGMSCIVRAITDRKGV 231
            QN  +V+  +GG ++  IE  V  +  + LD LMKYIYRG+A    AG +    LKWH+  L KGGM  I+R I+++K V
Sbjct:   62 QNATVVLSLLGGFKEKDIEASVNGLNDDQLDVLMKYIYRGLA----AGENSAVFLKWHEVVLKKGGMGTIIRTISEKKTV 137          
BLAST of mRNA_M-pyrifera_M_contig85557.19945.1 vs. uniprot
Match: A0A4Y7M463_9CRUS (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Daphnia barbata TaxID=414587 RepID=A0A4Y7M463_9CRUS)

HSP 1 Score: 68.2 bits (165), Expect = 1.040e-12
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    7 FEIVMRAMGGVRDDGIEKCVEAIEAEDLDTLMKYIYRGM-ADERFAGGSLLKWHQHTLAKGGMSCIVRAITDRKGV 231
              +VM+ +  V+   IE+ V A++++ LD LMKYIYRG       + G LL WH+   A  G+ CIVR +TD+K V
Sbjct:   72 MNVVMQVLLSVKSSQIEEAVNALDSDQLDVLMKYIYRGFETPSEGSSGQLLAWHEKVHAVAGVGCIVRVLTDKKRV 147          
BLAST of mRNA_M-pyrifera_M_contig85557.19945.1 vs. uniprot
Match: A0A507DKP2_9FUNG (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DKP2_9FUNG)

HSP 1 Score: 68.2 bits (165), Expect = 1.180e-12
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 QNFEIVMRAMGGVRDDGIEKCVEAIEAEDLDTLMKYIYRGMAD-ERFAGGSLLKWHQHTLAKGGMSCIVRAITDRK 225
            +N + VM ++   +   I   V  +  + LDTLMKYIYRGMA+ E +    LL WH+     GG+ CI+R +TDRK
Sbjct:   76 RNTQTVMDSLLAAKSSDIPNIVSRLNPQQLDTLMKYIYRGMANPELYNAAVLLSWHEKAYEAGGLGCIIRVMTDRK 151          
BLAST of mRNA_M-pyrifera_M_contig85557.19945.1 vs. uniprot
Match: F1A489_DICPU (Actin-related protein 2/3 complex subunit 5 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A489_DICPU)

HSP 1 Score: 67.4 bits (163), Expect = 1.710e-12
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 QNFEIVMRAMGGVRDDGIEKCVEAIEAEDLDTLMKYIYRGMADERFAGGSLLKWHQHTLAKGGMSCIVRAITDRKGV 231
            QN  IV+  +G  ++  +E  VE++  E LD LMKY+YRG+A    +     KWH+  L KGGM  I+R I+++K V
Sbjct:   63 QNATIVLNLLGSFKEKDVETSVESLNDEQLDVLMKYVYRGLAVGENSA-IFFKWHECVLKKGGMGTIIRVISEKKTV 138          
BLAST of mRNA_M-pyrifera_M_contig85557.19945.1 vs. uniprot
Match: E9FWA9_DAPPU (Actin-related protein 2/3 complex subunit 5 n=11 Tax=Daphnia TaxID=6668 RepID=E9FWA9_DAPPU)

HSP 1 Score: 67.0 bits (162), Expect = 3.260e-12
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    7 FEIVMRAMGGVRDDGIEKCVEAIEAEDLDTLMKYIYRGM-ADERFAGGSLLKWHQHTLAKGGMSCIVRAITDRKGV 231
              IVM+ +  V+   IE+ V A++ + LD LMKYIYRG       + G LL WH+   A  G+ CIVR +TD+K V
Sbjct:   77 LNIVMQVLLSVKSTQIEEAVNALDRDQLDILMKYIYRGFETPSEGSSGQLLAWHEKVHAVAGVGCIVRVLTDKKRV 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85557.19945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H192_ACACA1.280e-1545.45Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
D3BAU2_POLPP2.780e-1541.98Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
F4QBJ7_CAVFA7.920e-1444.16Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
UPI000644EC788.100e-1440.26hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A152A6H4_9MYCE4.470e-1338.16Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A8J4UWY0_9MYCE8.350e-1343.75Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A4Y7M463_9CRUS1.040e-1242.11Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
A0A507DKP2_9FUNG1.180e-1242.11Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
F1A489_DICPU1.710e-1241.56Actin-related protein 2/3 complex subunit 5 n=1 Ta... [more]
E9FWA9_DAPPU3.260e-1243.42Actin-related protein 2/3 complex subunit 5 n=11 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85557contigM-pyrifera_M_contig85557:146..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score63.2
Seed ortholog evalue5.9e-08
Seed eggNOG ortholog6669.EFX87860
KEGG koko:K05754
KEGG Pathwayko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map04144,map04666,map04810,map05100,map05130,map05131,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0003674,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005885,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0009653,GO:0009987,GO:0010638,GO:0015629,GO:0016043,GO:0016477,GO:0030027,GO:0030029,GO:0030036,GO:0030832,GO:0030833,GO:0030838,GO:0031252,GO:0031334,GO:0032271,GO:0032273,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0034314,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051130,GO:0051179,GO:0051493,GO:0051495,GO:0051674,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0097435,GO:0110053,GO:0120025,GO:1902903,GO:1902905
EggNOG free text desc.Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks
EggNOG OGs3A1Z9@33154,3BQJT@33208,3D1X7@33213,41Z8U@6656,KOG3380@1,KOG3380@2759
COG Functional cat.Z
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04812
Exons2
Model size234
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85557.19945.1prot_M-pyrifera_M_contig85557.19945.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85557 164..466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.0759635-UTR-M-pyrifera_M_contig85557:145..1631622816765.0759635-UTR-M-pyrifera_M_contig85557:145..163Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85557 146..163 +
1692278165.0096655-UTR-M-pyrifera_M_contig85557:145..1631692278165.0096655-UTR-M-pyrifera_M_contig85557:145..163Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85557 146..163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.0875695-CDS-M-pyrifera_M_contig85557:163..3281622816765.0875695-CDS-M-pyrifera_M_contig85557:163..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85557 164..328 +
1692278165.0234344-CDS-M-pyrifera_M_contig85557:163..3281692278165.0234344-CDS-M-pyrifera_M_contig85557:163..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85557 164..328 +
1622816765.0972493-CDS-M-pyrifera_M_contig85557:415..4661622816765.0972493-CDS-M-pyrifera_M_contig85557:415..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85557 416..466 +
1692278165.0345306-CDS-M-pyrifera_M_contig85557:415..4661692278165.0345306-CDS-M-pyrifera_M_contig85557:415..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85557 416..466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85557.19945.1

>prot_M-pyrifera_M_contig85557.19945.1 ID=prot_M-pyrifera_M_contig85557.19945.1|Name=mRNA_M-pyrifera_M_contig85557.19945.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
MRAMGGVRDDGIEKCVEAIEAEDLDTLMKYIYRGMADERFAGGSLLKWHQ
HTLAKGGMSCIVRAITDRKGV*
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mRNA from alignment at M-pyrifera_M_contig85557:146..466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85557.19945.1 ID=mRNA_M-pyrifera_M_contig85557.19945.1|Name=mRNA_M-pyrifera_M_contig85557.19945.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig85557:146..466+ (Macrocystis pyrifera P11B4 male)
CAAAACTTCGAAATAGTCATGCGGGCAATGGGAGGAGTGAGGGATGACGG CATCGAAAAATGCGTGGAAGCCATCGAAGCAGAAGATCTAGACACCCTCA TGAAGTACATCTACAGAGGCATGGCGGACGAACGCTTCGCTGGTGGAAGT TTGCTCAAATGGCACCAGCATACGCTTGCAAAGGTACGTGGCATGTGGGT TATTGTGGGTGTGGGAGTTTGGGGTGAAGGGTGTTTTGTAGGGACGTTGT ATTTCGTGATTCTTTTGCAGGGAGGAATGTCGTGCATTGTGAGAGCTATC ACAGACAGGAAAGGCGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85557:146..466+

>mRNA_M-pyrifera_M_contig85557.19945.1 ID=mRNA_M-pyrifera_M_contig85557.19945.1|Name=mRNA_M-pyrifera_M_contig85557.19945.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig85557:146..466+ (Macrocystis pyrifera P11B4 male)
ATGCGGGCAATGGGAGGAGTGAGGGATGACGGCATCGAAAAATGCGTGGA
AGCCATCGAAGCAGAAGATCTAGACACCCTCATGAAGTACATCTACAGAG
GCATGGCGGACGAACGCTTCGCTGGTGGAAGTTTGCTCAAATGGCACCAG
CATACGCTTGCAAAGATGCGGGCAATGGGAGGAGTGAGGGATGACGGCAT
CGAAAAATGCGTGGAAGCCATCGAAGCAGAAGATCTAGACACCCTCATGA
AGTACATCTACAGAGGCATGGCGGACGAACGCTTCGCTGGTGGAAGTTTG
CTCAAATGGCACCAGCATACGCTTGCAAAGGGAGGAATGTCGTGCATTGT
GAGAGCTATCACAGACAGGAAAGGCGTGTGAGGAGGAATGTCGTGCATTG
TGAGAGCTATCACAGACAGGAAAGGCGTGTGA
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