mRNA_M-pyrifera_M_contig85552.19943.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85552.19943.1
Unique NamemRNA_M-pyrifera_M_contig85552.19943.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85552.19943.1 vs. uniprot
Match: A0A672G7V0_SALFA (EGF-like domain-containing protein n=2 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672G7V0_SALFA)

HSP 1 Score: 50.1 bits (118), Expect = 1.220e-5
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 1 
Query:    4 PLNCGLNGDCVNGVCVCDAGWNGAACDELV 93
            P+NC  NGDCV+G C C  GW GAACD LV
Sbjct:  337 PVNCSGNGDCVDGRCRCQEGWQGAACDSLV 366
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BLAST of mRNA_M-pyrifera_M_contig85552.19943.1 vs. uniprot
Match: A0A315VP23_GAMAF (EGF-like domain-containing protein n=1 Tax=Gambusia affinis TaxID=33528 RepID=A0A315VP23_GAMAF)

HSP 1 Score: 48.9 bits (115), Expect = 3.000e-5
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 1 
Query:    4 PLNCGLNGDCVNGVCVCDAGWNGAACDELV 93
            P NC  +G+CVNG C C+ GW GAACD LV
Sbjct:   44 PTNCSEHGECVNGRCQCEKGWQGAACDTLV 73
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BLAST of mRNA_M-pyrifera_M_contig85552.19943.1 vs. uniprot
Match: UPI001CDC1F13 (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase n=1 Tax=Gambusia affinis TaxID=33528 RepID=UPI001CDC1F13)

HSP 1 Score: 48.9 bits (115), Expect = 3.120e-5
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 1 
Query:    4 PLNCGLNGDCVNGVCVCDAGWNGAACDELV 93
            P NC  +G+CVNG C C+ GW GAACD LV
Sbjct:  337 PTNCSEHGECVNGRCQCEKGWQGAACDTLV 366
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BLAST of mRNA_M-pyrifera_M_contig85552.19943.1 vs. uniprot
Match: UPI001CF67188 (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like isoform X4 n=1 Tax=Thunnus albacares TaxID=8236 RepID=UPI001CF67188)

HSP 1 Score: 48.5 bits (114), Expect = 4.260e-5
Identity = 20/30 (66.67%), Postives = 21/30 (70.00%), Query Frame = 1 
Query:    4 PLNCGLNGDCVNGVCVCDAGWNGAACDELV 93
            P NC  NGDCV+G C C  GW GAACD LV
Sbjct:  341 PENCSGNGDCVDGRCRCQEGWQGAACDSLV 370
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BLAST of mRNA_M-pyrifera_M_contig85552.19943.1 vs. uniprot
Match: UPI001C4A8A21 (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like isoform X6 n=2 Tax=Thunnus maccoyii TaxID=8240 RepID=UPI001C4A8A21)

HSP 1 Score: 48.5 bits (114), Expect = 4.270e-5
Identity = 20/30 (66.67%), Postives = 21/30 (70.00%), Query Frame = 1 
Query:    4 PLNCGLNGDCVNGVCVCDAGWNGAACDELV 93
            P NC  NGDCV+G C C  GW GAACD LV
Sbjct:  311 PENCSGNGDCVDGRCRCQEGWQGAACDSLV 340
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BLAST of mRNA_M-pyrifera_M_contig85552.19943.1 vs. uniprot
Match: UPI001C4AF357 (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like isoform X1 n=10 Tax=Thunnus TaxID=8234 RepID=UPI001C4AF357)

HSP 1 Score: 48.5 bits (114), Expect = 4.270e-5
Identity = 20/30 (66.67%), Postives = 21/30 (70.00%), Query Frame = 1 
Query:    4 PLNCGLNGDCVNGVCVCDAGWNGAACDELV 93
            P NC  NGDCV+G C C  GW GAACD LV
Sbjct:  341 PENCSGNGDCVDGRCRCQEGWQGAACDSLV 370
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BLAST of mRNA_M-pyrifera_M_contig85552.19943.1 vs. uniprot
Match: A0A2C9JX44_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JX44_BIOGL)

HSP 1 Score: 48.1 bits (113), Expect = 5.900e-5
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 1 
Query:    1 CPLNCGLNGDCVNGVCVCDAGWNGAACD 84
            CP  CG NGDC+NGVC+C AG++G  CD
Sbjct: 1444 CPEPCGNNGDCINGVCICKAGYSGEKCD 1471
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BLAST of mRNA_M-pyrifera_M_contig85552.19943.1 vs. uniprot
Match: UPI001ED82B5F (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase n=1 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED82B5F)

HSP 1 Score: 47.8 bits (112), Expect = 8.000e-5
Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 1 
Query:    4 PLNCGLNGDCVNGVCVCDAGWNGAACDELV 93
            P NC  +GDCV+G C C AGW GA CD LV
Sbjct:  337 PANCSGHGDCVDGRCRCQAGWQGAVCDSLV 366
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BLAST of mRNA_M-pyrifera_M_contig85552.19943.1 vs. uniprot
Match: UPI0018EA6086 (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase isoform X1 n=4 Tax=Micropterus TaxID=27705 RepID=UPI0018EA6086)

HSP 1 Score: 47.8 bits (112), Expect = 8.000e-5
Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 1 
Query:    4 PLNCGLNGDCVNGVCVCDAGWNGAACDELV 93
            P NC  +GDCV+G C C  GW GAACD LV
Sbjct:  337 PANCSGHGDCVDGRCQCQEGWQGAACDSLV 366
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85552.19943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A672G7V0_SALFA1.220e-566.67EGF-like domain-containing protein n=2 Tax=Salaria... [more]
A0A315VP23_GAMAF3.000e-563.33EGF-like domain-containing protein n=1 Tax=Gambusi... [more]
UPI001CDC1F133.120e-563.33N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
UPI001CF671884.260e-566.67N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
UPI001C4A8A214.270e-566.67N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
UPI001C4AF3574.270e-566.67N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
A0A2C9JX44_BIOGL5.900e-564.29Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
UPI001ED82B5F8.000e-563.33N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
UPI0018EA60868.000e-563.33N-acetylglucosamine-1-phosphodiester alpha-N-acety... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85552contigM-pyrifera_M_contig85552:689..850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.0077977-CDS-M-pyrifera_M_contig85552:688..8501622816765.0077977-CDS-M-pyrifera_M_contig85552:688..850Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85552 689..850 +
1692278164.984568-CDS-M-pyrifera_M_contig85552:688..8501692278164.984568-CDS-M-pyrifera_M_contig85552:688..850Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85552 689..850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85552.19943.1prot_M-pyrifera_M_contig85552.19943.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85552 689..850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85552.19943.1

>prot_M-pyrifera_M_contig85552.19943.1 ID=prot_M-pyrifera_M_contig85552.19943.1|Name=mRNA_M-pyrifera_M_contig85552.19943.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
CPLNCGLNGDCVNGVCVCDAGWNGAACDELVLGPANPKGGYLNESETSWG
GRVV
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mRNA from alignment at M-pyrifera_M_contig85552:689..850+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85552.19943.1 ID=mRNA_M-pyrifera_M_contig85552.19943.1|Name=mRNA_M-pyrifera_M_contig85552.19943.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig85552:689..850+ (Macrocystis pyrifera P11B4 male)
TGTCCTTTGAATTGTGGGTTGAATGGAGATTGTGTGAATGGAGTGTGTGT
TTGTGACGCGGGATGGAATGGTGCGGCTTGTGACGAGCTGGTTCTGGGTC
CTGCAAATCCGAAAGGTGGATATCTGAATGAATCAGAGACGAGTTGGGGT
GGTCGAGTTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85552:689..850+

>mRNA_M-pyrifera_M_contig85552.19943.1 ID=mRNA_M-pyrifera_M_contig85552.19943.1|Name=mRNA_M-pyrifera_M_contig85552.19943.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig85552:689..850+ (Macrocystis pyrifera P11B4 male)
TGTCCTTTGAATTGTGGGTTGAATGGAGATTGTGTGAATGGAGTGTGTGT
TTGTGACGCGGGATGGAATGGTGCGGCTTGTGACGAGCTGGTTCTGGGTC
CTGCAAATCCGAAAGGTGGATATCTGAATGAATCAGAGACGAGTTGGGGT
GGTCGAGTTGTGTGTCCTTTGAATTGTGGGTTGAATGGAGATTGTGTGAA
TGGAGTGTGTGTTTGTGACGCGGGATGGAATGGTGCGGCTTGTGACGAGC
TGGTTCTGGGTCCTGCAAATCCGAAAGGTGGATATCTGAATGAATCAGAG
ACGAGTTGGGGTGGTCGAGTTGTG
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