mRNA_M-pyrifera_M_contig85542.19940.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85542.19940.1
Unique NamemRNA_M-pyrifera_M_contig85542.19940.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig85542.19940.1 vs. uniprot
Match: A0A1A8FAX5_9TELE (Impact homolog (Fragment) n=8 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A8FAX5_9TELE)

HSP 1 Score: 73.2 bits (178), Expect = 5.190e-14
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    7 LLHVMDAKDVVVVVSRWYGGVLLGPKRFAIINNCAREIILEHGFAT 144
            LL ++D +DVVVVVSRWYGG+LLGP RF +INNCAR I++E G+  
Sbjct:  251 LLQILDVRDVVVVVSRWYGGILLGPDRFKLINNCARNILVEEGYTA 296
[Close]
BLAST of mRNA_M-pyrifera_M_contig85542.19940.1 vs. uniprot
Match: A0A8C6P676_NOTFU (Impact RWD domain protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6P676_NOTFU)

HSP 1 Score: 71.6 bits (174), Expect = 8.470e-14
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   10 LHVMDAKDVVVVVSRWYGGVLLGPKRFAIINNCAREIILEHGFAT 144
            L ++D +DVVVVVSRWYGG+LLGP RF +INNCAR I++E G+  
Sbjct:  166 LQILDVRDVVVVVSRWYGGILLGPDRFKLINNCARNILVEEGYTA 210
[Close]
BLAST of mRNA_M-pyrifera_M_contig85542.19940.1 vs. uniprot
Match: A0A2R5GTQ5_9STRA (Protein IMPACT n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTQ5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.790e-14
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 AELLHVMDAKDVVVVVSRWYGGVLLGPKRFAIINNCAREIILEHGFAT 144
            A LL ++DA++VVVVVSRWYGG+ LGP RF IINN ARE++L+ GF T
Sbjct:  215 AHLLDIVDARNVVVVVSRWYGGIHLGPSRFKIINNVARELLLQEGFIT 262
[Close]
BLAST of mRNA_M-pyrifera_M_contig85542.19940.1 vs. uniprot
Match: UPI0009A3793D (protein IMPACT-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A3793D)

HSP 1 Score: 69.3 bits (168), Expect = 9.180e-14
Identity = 28/45 (62.22%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    7 LLHVMDAKDVVVVVSRWYGGVLLGPKRFAIINNCAREIILEHGFA 141
            LL ++DA++V+V+VSRWYGG+LLGP RF  INNCAR I+++ G+A
Sbjct:   64 LLQILDARNVLVIVSRWYGGILLGPDRFKHINNCARNILVDEGYA 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig85542.19940.1 vs. uniprot
Match: A0A8C6VSQ2_NOTFU (Impact RWD domain protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6VSQ2_NOTFU)

HSP 1 Score: 71.6 bits (174), Expect = 1.160e-13
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   10 LHVMDAKDVVVVVSRWYGGVLLGPKRFAIINNCAREIILEHGFAT 144
            L ++D +DVVVVVSRWYGG+LLGP RF +INNCAR I++E G+  
Sbjct:  195 LQILDVRDVVVVVSRWYGGILLGPDRFKLINNCARNILVEEGYTA 239
[Close]
BLAST of mRNA_M-pyrifera_M_contig85542.19940.1 vs. uniprot
Match: IMPCT_XENLA (Protein IMPACT n=3 Tax=Xenopus TaxID=262014 RepID=IMPCT_XENLA)

HSP 1 Score: 72.0 bits (175), Expect = 1.330e-13
Identity = 28/46 (60.87%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    7 LLHVMDAKDVVVVVSRWYGGVLLGPKRFAIINNCAREIILEHGFAT 144
            L+ ++DA+DV+VVVSRWYGG+LLGP RF  INNCAR +++EH + +
Sbjct:  248 LMQILDARDVMVVVSRWYGGILLGPDRFKHINNCARNVLMEHNYCS 293
[Close]
BLAST of mRNA_M-pyrifera_M_contig85542.19940.1 vs. uniprot
Match: UPI001AAC6906 (protein IMPACT isoform X1 n=3 Tax=Ranoidea TaxID=30352 RepID=UPI001AAC6906)

HSP 1 Score: 72.0 bits (175), Expect = 1.420e-13
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    7 LLHVMDAKDVVVVVSRWYGGVLLGPKRFAIINNCAREIILEHGFAT 144
            L+ ++D KDV+VVVSRWYGG+LLGP RF  INNCAR I++EH +++
Sbjct:  253 LMQILDVKDVMVVVSRWYGGILLGPDRFKHINNCARNILVEHNYSS 298
[Close]
BLAST of mRNA_M-pyrifera_M_contig85542.19940.1 vs. uniprot
Match: UPI0018ECB4DB (protein IMPACT n=1 Tax=Micropterus salmoides TaxID=27706 RepID=UPI0018ECB4DB)

HSP 1 Score: 68.2 bits (165), Expect = 1.430e-13
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    7 LLHVMDAKDVVVVVSRWYGGVLLGPKRFAIINNCAREIILEHGFAT 144
            LL ++D ++V+VVVSRWYGG+LLGP RF  INNCAR I++E G+  
Sbjct:   39 LLQILDVRNVMVVVSRWYGGILLGPDRFKHINNCARNILVEEGYTA 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig85542.19940.1 vs. uniprot
Match: A0A1A7ZSP4_NOTFU (Impact homolog (Fragment) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZSP4_NOTFU)

HSP 1 Score: 70.1 bits (170), Expect = 1.510e-13
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   13 HVMDAKDVVVVVSRWYGGVLLGPKRFAIINNCAREIILEHGFAT 144
             ++D +DVVVVVSRWYGG+LLGP RF +INNCAR I++E G+  
Sbjct:  123 QILDVRDVVVVVSRWYGGILLGPDRFKLINNCARNILVEEGYTA 166
[Close]
BLAST of mRNA_M-pyrifera_M_contig85542.19940.1 vs. uniprot
Match: A0A4Z2FPB6_9TELE (Protein IMPACT-B n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2FPB6_9TELE)

HSP 1 Score: 70.9 bits (172), Expect = 1.550e-13
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    7 LLHVMDAKDVVVVVSRWYGGVLLGPKRFAIINNCAREIILEHGFAT 144
            LL ++DA++V VVVSRWYGGVLLGP RF  INNCAR I++E G+A 
Sbjct:  165 LLQILDARNVAVVVSRWYGGVLLGPDRFKHINNCARTILVEEGYAA 210
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85542.19940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1A8FAX5_9TELE5.190e-1465.22Impact homolog (Fragment) n=8 Tax=Nothobranchiidae... [more]
A0A8C6P676_NOTFU8.470e-1464.44Impact RWD domain protein n=1 Tax=Nothobranchius f... [more]
A0A2R5GTQ5_9STRA8.790e-1466.67Protein IMPACT n=1 Tax=Hondaea fermentalgiana TaxI... [more]
UPI0009A3793D9.180e-1462.22protein IMPACT-like n=1 Tax=Rhincodon typus TaxID=... [more]
A0A8C6VSQ2_NOTFU1.160e-1364.44Impact RWD domain protein n=1 Tax=Nothobranchius f... [more]
IMPCT_XENLA1.330e-1360.87Protein IMPACT n=3 Tax=Xenopus TaxID=262014 RepID=... [more]
UPI001AAC69061.420e-1363.04protein IMPACT isoform X1 n=3 Tax=Ranoidea TaxID=3... [more]
UPI0018ECB4DB1.430e-1360.87protein IMPACT n=1 Tax=Micropterus salmoides TaxID... [more]
A0A1A7ZSP4_NOTFU1.510e-1363.64Impact homolog (Fragment) n=1 Tax=Nothobranchius f... [more]
A0A4Z2FPB6_9TELE1.550e-1367.39Protein IMPACT-B n=1 Tax=Liparis tanakae TaxID=230... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85542contigM-pyrifera_M_contig85542:702..860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score69.7
Seed ortholog evalue4.1e-10
Seed eggNOG ortholog8364.ENSXETP00000033381
Preferred nameIMPACT
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000302,GO:0000902,GO:0001932,GO:0001933,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005844,GO:0006355,GO:0006357,GO:0006417,GO:0006446,GO:0006950,GO:0006979,GO:0007154,GO:0007275,GO:0007399,GO:0008092,GO:0008150,GO:0009267,GO:0009268,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010225,GO:0010243,GO:0010447,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010720,GO:0010941,GO:0014070,GO:0016043,GO:0016049,GO:0019219,GO:0019220,GO:0019222,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031333,GO:0031399,GO:0031400,GO:0031667,GO:0031668,GO:0031669,GO:0031952,GO:0031953,GO:0032056,GO:0032058,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0034198,GO:0034248,GO:0034250,GO:0034599,GO:0034614,GO:0034644,GO:0035690,GO:0040007,GO:0042149,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042542,GO:0042594,GO:0043021,GO:0043022,GO:0043254,GO:0043555,GO:0043558,GO:0043618,GO:0043620,GO:0044087,GO:0044877,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045727,GO:0045892,GO:0045934,GO:0045936,GO:0045948,GO:0046677,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048588,GO:0048589,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0060560,GO:0060733,GO:0060992,GO:0065007,GO:0070301,GO:0070887,GO:0071214,GO:0071236,GO:0071262,GO:0071264,GO:0071310,GO:0071407,GO:0071417,GO:0071467,GO:0071468,GO:0071478,GO:0071482,GO:0071494,GO:0071495,GO:0071496,GO:0071840,GO:0072755,GO:0080090,GO:0080134,GO:0080135,GO:0097201,GO:0097237,GO:0104004,GO:0120036,GO:0120039,GO:1901561,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902679,GO:1903506,GO:1903507,GO:1990138,GO:1990253,GO:1990904,GO:1990928,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Impact RWD domain protein
EggNOG OGs39UDJ@33154,3BE0H@33208,3CXGG@33213,486TU@7711,48YUH@7742,COG1739@1,KOG3299@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816764.8725898-CDS-M-pyrifera_M_contig85542:701..8421622816764.8725898-CDS-M-pyrifera_M_contig85542:701..842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85542 702..842 -
1692278164.9148533-CDS-M-pyrifera_M_contig85542:701..8421692278164.9148533-CDS-M-pyrifera_M_contig85542:701..842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85542 702..842 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816764.8859265-UTR-M-pyrifera_M_contig85542:842..8601622816764.8859265-UTR-M-pyrifera_M_contig85542:842..860Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85542 843..860 -
1692278164.9295156-UTR-M-pyrifera_M_contig85542:842..8601692278164.9295156-UTR-M-pyrifera_M_contig85542:842..860Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85542 843..860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85542.19940.1prot_M-pyrifera_M_contig85542.19940.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85542 702..842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85542.19940.1

>prot_M-pyrifera_M_contig85542.19940.1 ID=prot_M-pyrifera_M_contig85542.19940.1|Name=mRNA_M-pyrifera_M_contig85542.19940.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
MDAKDVVVVVSRWYGGVLLGPKRFAIINNCAREIILEHGFATPKKG*
back to top

mRNA from alignment at M-pyrifera_M_contig85542:702..860-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85542.19940.1 ID=mRNA_M-pyrifera_M_contig85542.19940.1|Name=mRNA_M-pyrifera_M_contig85542.19940.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig85542:702..860- (Macrocystis pyrifera P11B4 male)
GCAGAGTTGTTGCACGTGATGGATGCCAAAGATGTTGTTGTGGTGGTGTC
AAGGTGGTATGGAGGCGTGCTCTTGGGCCCCAAACGCTTTGCTATTATCA
ACAATTGCGCAAGAGAAATCATCTTGGAGCATGGATTTGCTACACCGAAA
AAGGGGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85542:702..860-

>mRNA_M-pyrifera_M_contig85542.19940.1 ID=mRNA_M-pyrifera_M_contig85542.19940.1|Name=mRNA_M-pyrifera_M_contig85542.19940.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig85542:702..860- (Macrocystis pyrifera P11B4 male)
ATGGATGCCAAAGATGTTGTTGTGGTGGTGTCAAGGTGGTATGGAGGCGT
GCTCTTGGGCCCCAAACGCTTTGCTATTATCAACAATTGCGCAAGAGAAA
TCATCTTGGAGCATGGATTTGCTACACCGAAAAAGGGGTGAATGGATGCC
AAAGATGTTGTTGTGGTGGTGTCAAGGTGGTATGGAGGCGTGCTCTTGGG
CCCCAAACGCTTTGCTATTATCAACAATTGCGCAAGAGAAATCATCTTGG
AGCATGGATTTGCTACACCGAAAAAGGGGTGA
back to top