mRNA_M-pyrifera_M_contig8545.19924.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8545.19924.1
Unique NamemRNA_M-pyrifera_M_contig8545.19924.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8545.19924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8545contigM-pyrifera_M_contig8545:3455..3992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.890534-CDS-M-pyrifera_M_contig8545:3454..37661622816763.890534-CDS-M-pyrifera_M_contig8545:3454..3766Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8545 3455..3766 +
1692278164.329532-CDS-M-pyrifera_M_contig8545:3454..37661692278164.329532-CDS-M-pyrifera_M_contig8545:3454..3766Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8545 3455..3766 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.9014077-UTR-M-pyrifera_M_contig8545:3766..39921622816763.9014077-UTR-M-pyrifera_M_contig8545:3766..3992Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8545 3767..3992 +
1692278164.3437822-UTR-M-pyrifera_M_contig8545:3766..39921692278164.3437822-UTR-M-pyrifera_M_contig8545:3766..3992Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8545 3767..3992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8545.19924.1prot_M-pyrifera_M_contig8545.19924.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8545 3455..3766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8545.19924.1

>prot_M-pyrifera_M_contig8545.19924.1 ID=prot_M-pyrifera_M_contig8545.19924.1|Name=mRNA_M-pyrifera_M_contig8545.19924.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
FGVAYVRLHVVFNRGRRRNVWVGGVDVYAWSVKNVPVDVRHDGDKKKIAG
ADLVDDRGTKLYKVKGTEKATQVQKKREQTLISKTGNSQKPRGTYRKVLK
VSA*
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mRNA from alignment at M-pyrifera_M_contig8545:3455..3992+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8545.19924.1 ID=mRNA_M-pyrifera_M_contig8545.19924.1|Name=mRNA_M-pyrifera_M_contig8545.19924.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=538bp|location=Sequence derived from alignment at M-pyrifera_M_contig8545:3455..3992+ (Macrocystis pyrifera P11B4 male)
TTCGGCGTGGCTTACGTACGCCTGCACGTCGTTTTCAATAGAGGTCGACG
GCGTAACGTTTGGGTCGGTGGTGTCGACGTCTACGCATGGAGCGTCAAAA
ACGTCCCTGTCGATGTCAGACACGACGGAGACAAGAAGAAAATAGCAGGA
GCCGATCTGGTAGATGATCGGGGTACCAAACTCTACAAAGTCAAGGGAAC
AGAAAAAGCTACGCAAGTACAAAAAAAAAGAGAACAGACGTTGATATCAA
AGACAGGAAACAGCCAGAAACCAAGGGGTACGTACAGGAAGGTATTAAAA
GTCAGTGCGTAAGGGCTTGTACTACGAAAAAGCTGTATTTACAGTAAGCT
GCAATACGCCATATGCTCCAATAAGCAGTACGTTCTTATTGACTACGTGA
GGCGAAACTACGTGGGGTGGAAGTTCGCAACCGACGCACGCAGATACGTA
GGGTCGACAGTGTTAGCGGCCGTAGCGGGGGTGAAGAGTTCTAGCGAATC
ATCATTCGTAGAGGCGGACGTCCTGCCGCTGACCGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8545:3455..3992+

>mRNA_M-pyrifera_M_contig8545.19924.1 ID=mRNA_M-pyrifera_M_contig8545.19924.1|Name=mRNA_M-pyrifera_M_contig8545.19924.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig8545:3455..3992+ (Macrocystis pyrifera P11B4 male)
TTCGGCGTGGCTTACGTACGCCTGCACGTCGTTTTCAATAGAGGTCGACG
GCGTAACGTTTGGGTCGGTGGTGTCGACGTCTACGCATGGAGCGTCAAAA
ACGTCCCTGTCGATGTCAGACACGACGGAGACAAGAAGAAAATAGCAGGA
GCCGATCTGGTAGATGATCGGGGTACCAAACTCTACAAAGTCAAGGGAAC
AGAAAAAGCTACGCAAGTACAAAAAAAAAGAGAACAGACGTTGATATCAA
AGACAGGAAACAGCCAGAAACCAAGGGGTACGTACAGGAAGGTATTAAAA
GTCAGTGCGTAATTCGGCGTGGCTTACGTACGCCTGCACGTCGTTTTCAA
TAGAGGTCGACGGCGTAACGTTTGGGTCGGTGGTGTCGACGTCTACGCAT
GGAGCGTCAAAAACGTCCCTGTCGATGTCAGACACGACGGAGACAAGAAG
AAAATAGCAGGAGCCGATCTGGTAGATGATCGGGGTACCAAACTCTACAA
AGTCAAGGGAACAGAAAAAGCTACGCAAGTACAAAAAAAAAGAGAACAGA
CGTTGATATCAAAGACAGGAAACAGCCAGAAACCAAGGGGTACGTACAGG
AAGGTATTAAAAGTCAGTGCGTAA
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