mRNA_M-pyrifera_M_contig85448.19922.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85448.19922.1
Unique NamemRNA_M-pyrifera_M_contig85448.19922.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig85448.19922.1 vs. uniprot
Match: A0A521KR86_9BACT (VCBS repeat-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KR86_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 4.290e-6
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   16 LARRELALGGRPLGLVAHDFDADGFDDLAVVLESPGEVAVFAGTDQGLA 162
            LARRELAL G+P  L A D D DG D+LAV L+SPG + V+ GT  G+A
Sbjct:   88 LARRELALPGKPACLWAGDLDGDGRDELAVALQSPGRLLVWRGTATGIA 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85448.19922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A521KR86_9BACT4.290e-659.18VCBS repeat-containing protein (Fragment) n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85448contigM-pyrifera_M_contig85448:74..862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size789
Cds size789
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.8598435-CDS-M-pyrifera_M_contig85448:73..8621622816763.8598435-CDS-M-pyrifera_M_contig85448:73..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85448 74..862 +
1692278164.31812-CDS-M-pyrifera_M_contig85448:73..8621692278164.31812-CDS-M-pyrifera_M_contig85448:73..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85448 74..862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85448.19922.1prot_M-pyrifera_M_contig85448.19922.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85448 74..862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85448.19922.1

>prot_M-pyrifera_M_contig85448.19922.1 ID=prot_M-pyrifera_M_contig85448.19922.1|Name=mRNA_M-pyrifera_M_contig85448.19922.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=263bp
PAPDLLARRELALGGRPLGLVAHDFDADGFDDLAVVLESPGEVAVFAGTD
QGLAPFGAKVAVGGFPTEPVLQAGRVLVGSMTTGELLRVRVGRDADGALV
PGVEARSAPGGVPRLLAASPTRTLWVTRDDALVVLDAQGGRVERQLEAGA
RIVGAYVDDDTGRVIVLGQGAGEVRALDAATLADQARLAFPGVPRSVDAG
DLDGDGDDELVVCGGDDAVWVFGLGAPGGVSMAAAPARLTQPNLVPKGIH
ARDLSGDGRAELV
back to top

mRNA from alignment at M-pyrifera_M_contig85448:74..862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85448.19922.1 ID=mRNA_M-pyrifera_M_contig85448.19922.1|Name=mRNA_M-pyrifera_M_contig85448.19922.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=789bp|location=Sequence derived from alignment at M-pyrifera_M_contig85448:74..862+ (Macrocystis pyrifera P11B4 male)
CCGGCGCCCGACCTGCTCGCGCGCCGCGAGCTGGCCCTCGGCGGCCGGCC
GCTCGGCCTGGTCGCGCACGACTTCGACGCCGACGGCTTCGACGACCTCG
CGGTCGTGCTCGAGTCGCCCGGCGAGGTCGCGGTCTTCGCGGGCACCGAC
CAAGGGCTCGCGCCGTTCGGCGCCAAGGTCGCGGTCGGCGGCTTCCCCAC
CGAGCCCGTGCTCCAGGCCGGGCGCGTGCTGGTCGGGTCGATGACGACCG
GCGAGCTGCTGCGGGTGCGCGTCGGGCGCGACGCGGACGGCGCGCTGGTC
CCCGGGGTCGAGGCGCGCTCGGCGCCCGGCGGCGTGCCGCGGCTCTTGGC
GGCCAGCCCGACGCGGACCTTGTGGGTCACCCGCGACGACGCGTTGGTGG
TGCTCGATGCCCAAGGCGGACGCGTCGAACGCCAGCTCGAGGCGGGCGCG
CGCATCGTCGGCGCGTACGTCGACGACGACACCGGGCGCGTGATCGTGCT
CGGCCAGGGCGCGGGCGAGGTGCGGGCGCTCGATGCGGCGACGCTTGCGG
ATCAGGCGCGCCTGGCCTTCCCCGGCGTGCCGCGCTCGGTCGACGCCGGC
GACCTCGACGGGGACGGCGACGACGAGCTCGTGGTCTGCGGCGGCGACGA
CGCGGTGTGGGTCTTCGGCCTTGGCGCGCCCGGCGGCGTGTCGATGGCGG
CCGCACCGGCGCGCTTGACCCAACCCAACCTGGTGCCCAAGGGGATCCAC
GCCCGCGACCTGTCCGGTGACGGGCGCGCCGAGCTGGTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85448:74..862+

>mRNA_M-pyrifera_M_contig85448.19922.1 ID=mRNA_M-pyrifera_M_contig85448.19922.1|Name=mRNA_M-pyrifera_M_contig85448.19922.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1578bp|location=Sequence derived from alignment at M-pyrifera_M_contig85448:74..862+ (Macrocystis pyrifera P11B4 male)
CCGGCGCCCGACCTGCTCGCGCGCCGCGAGCTGGCCCTCGGCGGCCGGCC
GCTCGGCCTGGTCGCGCACGACTTCGACGCCGACGGCTTCGACGACCTCG
CGGTCGTGCTCGAGTCGCCCGGCGAGGTCGCGGTCTTCGCGGGCACCGAC
CAAGGGCTCGCGCCGTTCGGCGCCAAGGTCGCGGTCGGCGGCTTCCCCAC
CGAGCCCGTGCTCCAGGCCGGGCGCGTGCTGGTCGGGTCGATGACGACCG
GCGAGCTGCTGCGGGTGCGCGTCGGGCGCGACGCGGACGGCGCGCTGGTC
CCCGGGGTCGAGGCGCGCTCGGCGCCCGGCGGCGTGCCGCGGCTCTTGGC
GGCCAGCCCGACGCGGACCTTGTGGGTCACCCGCGACGACGCGTTGGTGG
TGCTCGATGCCCAAGGCGGACGCGTCGAACGCCAGCTCGAGGCGGGCGCG
CGCATCGTCGGCGCGTACGTCGACGACGACACCGGGCGCGTGATCGTGCT
CGGCCAGGGCGCGGGCGAGGTGCGGGCGCTCGATGCGGCGACGCTTGCGG
ATCAGGCGCGCCTGGCCTTCCCCGGCGTGCCGCGCTCGGTCGACGCCGGC
GACCTCGACGGGGACGGCGACGACGAGCTCGTGGTCTGCGGCGGCGACGA
CGCGGTGTGGGTCTTCGGCCTTGGCGCGCCCGGCGGCGTGTCGATGGCGG
CCGCACCGGCGCGCTTGACCCAACCCAACCTGGTGCCCAAGGGGATCCAC
GCCCGCGACCTGTCCGGTGACGGGCGCGCCGAGCTGGTCCCGGCGCCCGA
CCTGCTCGCGCGCCGCGAGCTGGCCCTCGGCGGCCGGCCGCTCGGCCTGG
TCGCGCACGACTTCGACGCCGACGGCTTCGACGACCTCGCGGTCGTGCTC
GAGTCGCCCGGCGAGGTCGCGGTCTTCGCGGGCACCGACCAAGGGCTCGC
GCCGTTCGGCGCCAAGGTCGCGGTCGGCGGCTTCCCCACCGAGCCCGTGC
TCCAGGCCGGGCGCGTGCTGGTCGGGTCGATGACGACCGGCGAGCTGCTG
CGGGTGCGCGTCGGGCGCGACGCGGACGGCGCGCTGGTCCCCGGGGTCGA
GGCGCGCTCGGCGCCCGGCGGCGTGCCGCGGCTCTTGGCGGCCAGCCCGA
CGCGGACCTTGTGGGTCACCCGCGACGACGCGTTGGTGGTGCTCGATGCC
CAAGGCGGACGCGTCGAACGCCAGCTCGAGGCGGGCGCGCGCATCGTCGG
CGCGTACGTCGACGACGACACCGGGCGCGTGATCGTGCTCGGCCAGGGCG
CGGGCGAGGTGCGGGCGCTCGATGCGGCGACGCTTGCGGATCAGGCGCGC
CTGGCCTTCCCCGGCGTGCCGCGCTCGGTCGACGCCGGCGACCTCGACGG
GGACGGCGACGACGAGCTCGTGGTCTGCGGCGGCGACGACGCGGTGTGGG
TCTTCGGCCTTGGCGCGCCCGGCGGCGTGTCGATGGCGGCCGCACCGGCG
CGCTTGACCCAACCCAACCTGGTGCCCAAGGGGATCCACGCCCGCGACCT
GTCCGGTGACGGGCGCGCCGAGCTGGTC
back to top