mRNA_M-pyrifera_M_contig85445.19920.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig85445.19920.1
Unique Name	mRNA_M-pyrifera_M_contig85445.19920.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig85445.19920.1 vs. uniprot
Match: A0A0G4I341_9ALVE (TRAF-type domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I341_9ALVE)

HSP 1 Score: 52.4 bits (124), Expect = 2.920e-5
Identity = 31/102 (30.39%), Postives = 47/102 (46.08%), Query Frame = 1

Query:   25 CGLKFPEAHLAVHIGSRCVKRIISCPNGCGDRIEVAEMFLHEHECPNAPIRCA---CGQILNRNEHAEHTKKGCLEAMVFCPFGCGRKVRRNHVHQHARFEC 321
            C +  P+  +  H  + C KRI+ CPN CG+ +   E+ +H   CP     C    C   L R+   +H ++ C E  V CP      V  + + +H R EC
Sbjct:   25 CHMPIPKDQVDSH-PAVCRKRIVPCPNDCGEEMPKCEVLMHVKTCPLTEEECGYEGCSVTLARSFIEDH-REVCRERPVECPRCQKADVPFSRLKKHFRTEC 124

[Close]

BLAST of mRNA_M-pyrifera_M_contig85445.19920.1 vs. uniprot
Match: A9V3B5_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V3B5_MONBE)

HSP 1 Score: 51.6 bits (122), Expect = 5.780e-5
Identity = 27/100 (27.00%), Postives = 43/100 (43.00%), Query Frame = 1

Query:   22 GCGLKFPEAHLAVHIGSRCVKRIISCPN-GCGDRIEVAEMFLHEHECPNAPIRCACG---QILNRNEHAEHTKKGCLEAMVFCPFGCGRKVRRNHVHQHA 309
            GC        +  H+ + C  R+  CP+ GC       E+  H+  C    ++C  G     L  +    H    C E +V+CP GCG ++RR    +H+
Sbjct:  103 GCSAVIRVTEVDDHLANNCTMRVEKCPHAGCDFSGVAQEVAKHKKSCKYRWLKCPNGCRADDLTEDTLKRHLDALCPEMLVYCPEGCGARLRRRDFLEHS 202

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig85445.19920.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig85445.19920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A0G4I341_9ALVE	2.920e-5	30.39	TRAF-type domain-containing protein n=1 Tax=Chrome...	[more]
A9V3B5_MONBE	5.780e-5	27.00	Predicted protein n=1 Tax=Monosiga brevicollis Tax...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig85445	contig	M-pyrifera_M_contig85445:443..835 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Mammalia
Seed ortholog score	64.3
Seed ortholog evalue	4.8e-08
Seed eggNOG ortholog	185453.XP_006864961.1
Preferred name	TRAF6
KEGG ko	ko:K03175
KEGG Pathway	ko04010,ko04013,ko04064,ko04120,ko04140,ko04144,ko04214,ko04380,ko04620,ko04621,ko04622,ko04657,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05162,ko05168,ko05169,ko05200,ko05222,map04010,map04013,map04064,map04120,map04140,map04144,map04214,map04380,map04620,map04621,map04622,map04657,map04722,map05133,map05140,map05142,map05145,map05152,map05160,map05162,map05168,map05169,map05200,map05222
KEGG Module	M00686
Hectar predicted targeting category	other localisation
GOs	GO:0000122,GO:0000165,GO:0000187,GO:0000209,GO:0001503,GO:0001773,GO:0001775,GO:0001817,GO:0001819,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0001932,GO:0001934,GO:0002009,GO:0002218,GO:0002220,GO:0002221,GO:0002223,GO:0002224,GO:0002237,GO:0002250,GO:0002253,GO:0002274,GO:0002376,GO:0002429,GO:0002460,GO:0002478,GO:0002495,GO:0002504,GO:0002520,GO:0002521,GO:0002573,GO:0002637,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002709,GO:0002711,GO:0002718,GO:0002720,GO:0002724,GO:0002726,GO:0002753,GO:0002755,GO:0002757,GO:0002758,GO:0002761,GO:0002763,GO:0002764,GO:0002768,GO:0002791,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002831,GO:0002833,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005126,GO:0005164,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005811,GO:0005829,GO:0005886,GO:0005887,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007249,GO:0007250,GO:0007254,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008284,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0014020,GO:0016020,GO:0016021,GO:0016310,GO:0016331,GO:0016567,GO:0016579,GO:0016740,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019787,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019900,GO:0019901,GO:0021915,GO:0022407,GO:0022409,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030155,GO:0030316,GO:0030522,GO:0031090,GO:0031098,GO:0031224,GO:0031226,GO:0031293,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031347,GO:0031349,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031435,GO:0031624,GO:0031625,GO:0031664,GO:0031666,GO:0031982,GO:0031996,GO:0032101,GO:0032103,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032655,GO:0032663,GO:0032675,GO:0032735,GO:0032743,GO:0032755,GO:0032813,GO:0032872,GO:0032874,GO:0032879,GO:0032880,GO:0032944,GO:0032946,GO:0032991,GO:0033554,GO:0033619,GO:0033674,GO:0033993,GO:0034097,GO:0034162,GO:0035148,GO:0035239,GO:0035295,GO:0035556,GO:0035631,GO:0035872,GO:0036211,GO:0038061,GO:0038093,GO:0038095,GO:0042035,GO:0042088,GO:0042102,GO:0042108,GO:0042127,GO:0042129,GO:0042221,GO:0042325,GO:0042327,GO:0042475,GO:0042476,GO:0042592,GO:0042802,GO:0042826,GO:0042981,GO:0043009,GO:0043011,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043122,GO:0043123,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043235,GO:0043388,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043422,GO:0043506,GO:0043507,GO:0043549,GO:0043900,GO:0043902,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045075,GO:0045084,GO:0045088,GO:0045089,GO:0045321,GO:0045408,GO:0045410,GO:0045453,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045670,GO:0045672,GO:0045785,GO:0045859,GO:0045860,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046328,GO:0046330,GO:0046849,GO:0047485,GO:0048002,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048660,GO:0048661,GO:0048729,GO:0048731,GO:0048771,GO:0048856,GO:0048869,GO:0048871,GO:0050670,GO:0050671,GO:0050708,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050851,GO:0050852,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051023,GO:0051046,GO:0051049,GO:0051090,GO:0051091,GO:0051092,GO:0051094,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051249,GO:0051251,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051347,GO:0051403,GO:0051704,GO:0051707,GO:0051716,GO:0051865,GO:0060249,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0060606,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070302,GO:0070304,GO:0070423,GO:0070498,GO:0070534,GO:0070555,GO:0070646,GO:0070647,GO:0070663,GO:0070665,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071347,GO:0071396,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072175,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0097028,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098796,GO:0098797,GO:0098802,GO:0098805,GO:0140096,GO:1901222,GO:1901224,GO:1901564,GO:1901700,GO:1901701,GO:1902105,GO:1902107,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903037,GO:1903039,GO:1903320,GO:1903322,GO:1903506,GO:1903507,GO:1903508,GO:1903530,GO:1903706,GO:1903708,GO:2000026,GO:2000112,GO:2000113,GO:2000677,GO:2000679,GO:2001141
EggNOG free text desc.	TNF receptor-associated factor 6
EggNOG OGs	34TSW@311790,38EU7@33154,3BH0V@33208,3D0YQ@33213,3J6D9@40674,484FF@7711,48XKU@7742,KOG0297@1,KOG0297@2759
EC	2.3.2.27
COG Functional cat.	T
Best tax level	Afrotheria
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko04121,ko04131
Exons	1
Model size	393
Cds size	393
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816763.7773328-CDS-M-pyrifera_M_contig85445:442..835	1622816763.7773328-CDS-M-pyrifera_M_contig85445:442..835	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig85445 443..835 -
1692278164.2785525-CDS-M-pyrifera_M_contig85445:442..835	1692278164.2785525-CDS-M-pyrifera_M_contig85445:442..835	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig85445 443..835 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig85445.19920.1	prot_M-pyrifera_M_contig85445.19920.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig85445 443..835 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig85445:443..835-
coding sequence from alignment at M-pyrifera_M_contig85445:443..835-

protein sequence of mRNA_M-pyrifera_M_contig85445.19920.1

>prot_M-pyrifera_M_contig85445.19920.1 ID=prot_M-pyrifera_M_contig85445.19920.1|Name=mRNA_M-pyrifera_M_contig85445.19920.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
SLTPCPLGCGLKFPEAHLAVHIGSRCVKRIISCPNGCGDRIEVAEMFLHE
HECPNAPIRCACGQILNRNEHAEHTKKGCLEAMVFCPFGCGRKVRRNHVH
QHARFECGKRDRMCPECGVVVAVDAIPRHLA

mRNA from alignment at M-pyrifera_M_contig85445:443..835-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig85445.19920.1 ID=mRNA_M-pyrifera_M_contig85445.19920.1|Name=mRNA_M-pyrifera_M_contig85445.19920.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig85445:443..835- (Macrocystis pyrifera P11B4 male)
TCCCTTACTCCTTGTCCTTTGGGTTGCGGGTTGAAGTTTCCAGAAGCACA
CTTGGCTGTCCACATTGGGAGTCGTTGTGTGAAGAGGATCATTTCCTGCC
CCAATGGATGTGGGGATCGGATTGAAGTTGCAGAGATGTTCTTGCATGAA
CATGAGTGCCCGAATGCCCCGATTCGTTGTGCCTGTGGACAAATATTGAA
TCGCAACGAACATGCTGAGCACACGAAGAAAGGATGCTTGGAAGCTATGG
TGTTTTGTCCATTCGGTTGTGGTAGGAAGGTGAGAAGAAATCATGTCCAT
CAGCATGCAAGGTTTGAGTGTGGCAAGAGAGATCGAATGTGTCCTGAGTG
TGGAGTGGTGGTTGCAGTTGATGCGATTCCTAGACATCTTGCA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85445:443..835-

>mRNA_M-pyrifera_M_contig85445.19920.1 ID=mRNA_M-pyrifera_M_contig85445.19920.1|Name=mRNA_M-pyrifera_M_contig85445.19920.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig85445:443..835- (Macrocystis pyrifera P11B4 male)
TCCCTTACTCCTTGTCCTTTGGGTTGCGGGTTGAAGTTTCCAGAAGCACA
CTTGGCTGTCCACATTGGGAGTCGTTGTGTGAAGAGGATCATTTCCTGCC
CCAATGGATGTGGGGATCGGATTGAAGTTGCAGAGATGTTCTTGCATGAA
CATGAGTGCCCGAATGCCCCGATTCGTTGTGCCTGTGGACAAATATTGAA
TCGCAACGAACATGCTGAGCACACGAAGAAAGGATGCTTGGAAGCTATGG
TGTTTTGTCCATTCGGTTGTGGTAGGAAGGTGAGAAGAAATCATGTCCAT
CAGCATGCAAGGTTTGAGTGTGGCAAGAGAGATCGAATGTGTCCTGAGTG
TGGAGTGGTGGTTGCAGTTGATGCGATTCCTAGACATCTTGCATCCCTTA
CTCCTTGTCCTTTGGGTTGCGGGTTGAAGTTTCCAGAAGCACACTTGGCT
GTCCACATTGGGAGTCGTTGTGTGAAGAGGATCATTTCCTGCCCCAATGG
ATGTGGGGATCGGATTGAAGTTGCAGAGATGTTCTTGCATGAACATGAGT
GCCCGAATGCCCCGATTCGTTGTGCCTGTGGACAAATATTGAATCGCAAC
GAACATGCTGAGCACACGAAGAAAGGATGCTTGGAAGCTATGGTGTTTTG
TCCATTCGGTTGTGGTAGGAAGGTGAGAAGAAATCATGTCCATCAGCATG
CAAGGTTTGAGTGTGGCAAGAGAGATCGAATGTGTCCTGAGTGTGGAGTG
GTGGTTGCAGTTGATGCGATTCCTAGACATCTTGCA