mRNA_M-pyrifera_M_contig8544.19917.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8544.19917.1
Unique NamemRNA_M-pyrifera_M_contig8544.19917.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8544.19917.1 vs. uniprot
Match: D7FVG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG4_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 3.300e-32
Identity = 280/380 (73.68%), Postives = 297/380 (78.16%), Query Frame = 1 
Query:    1 NSRAPRFQQFGRVGGEGGKVAEGLYEDFGMNNVREYSAETADERKLILKRLEGEIKMRPSAVAEMMEQEPRLAEQSPEAISERFTWLKERLKLSEEQARSLVHRRPSVLCRGVKDGMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDARLLLRSTEVLDSKLVFFXXXXXXXXXXXXXXXXXXXXXXXXXXELMLAPRVAALKSAGVDVSFSLHWNTVAFGPRGNVFDDWVDRQAKR 1140
            N+ APRFQ FGR GGEG KVAE LYEDFG+NN+++YS E  DERK +L  LEG+++M   A+A+M+EQEPR+AEQ   AIS R                      PSVLCR V D MEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LLLRSTEVLD+K+ FF                          +LMLAPRVA LK AGV VSFS HWN +AFGPRG  FD WV RQA R
Sbjct:   72 NADAPRFQPFGRAGGEGSKVAERLYEDFGINNLKKYSPEATDERKRVLTWLEGKVRMSSRAIADMVEQEPRIAEQETGAISARLXXXXXXXXXXXXXXXXXXXXXPSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLDAKVAFFCQEMGATLEDVRAVLMTSPNFLLISIDLMLAPRVATLKDAGVKVSFSAHWNDLAFGPRGEAFDFWVRRQASR 451
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8544.19917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVG4_ECTSI3.300e-3273.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8544contigM-pyrifera_M_contig8544:3192..4343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue3.4e-30
Seed eggNOG ortholog2880.D7FVG4
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-09_000990.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons1
Model size1152
Cds size1152
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.634448-CDS-M-pyrifera_M_contig8544:3191..43431622816763.634448-CDS-M-pyrifera_M_contig8544:3191..4343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8544 3192..4343 +
1692278164.219909-CDS-M-pyrifera_M_contig8544:3191..43431692278164.219909-CDS-M-pyrifera_M_contig8544:3191..4343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8544 3192..4343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8544.19917.1prot_M-pyrifera_M_contig8544.19917.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8544 3192..4343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8544.19917.1

>prot_M-pyrifera_M_contig8544.19917.1 ID=prot_M-pyrifera_M_contig8544.19917.1|Name=mRNA_M-pyrifera_M_contig8544.19917.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=384bp
NSRAPRFQQFGRVGGEGGKVAEGLYEDFGMNNVREYSAETADERKLILKR
LEGEIKMRPSAVAEMMEQEPRLAEQSPEAISERFTWLKERLKLSEEQARS
LVHRRPSVLCRGVKDGMEPKVRWLQEELRLSDDEVASMVTSAPNILSVSV
EGGMVPKLAWLSNRLRLSHEELAVVVTTCPQLLTSSVEGALEPRLKWLQE
NLQIGGTILRERVLSFPWLLNLSEEGKLTPTYEFLKADLLLDDIEIRKTL
FRNPRMFLVPLRPALASTKKWLCQSLGMEEHEADAVLTRDARLLLRSTEV
LDSKLVFFCQEMGATLEELREVLLASPNLLLVSVELMLAPRVAALKSAGV
DVSFSLHWNTVAFGPRGNVFDDWVDRQAKRSSR*
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mRNA from alignment at M-pyrifera_M_contig8544:3192..4343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8544.19917.1 ID=mRNA_M-pyrifera_M_contig8544.19917.1|Name=mRNA_M-pyrifera_M_contig8544.19917.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig8544:3192..4343+ (Macrocystis pyrifera P11B4 male)
AACAGCAGAGCTCCGCGATTTCAACAATTCGGTCGCGTGGGAGGGGAGGG
CGGCAAGGTGGCAGAGGGTCTGTACGAAGACTTTGGCATGAACAACGTGC
GGGAGTATTCCGCGGAGACAGCAGATGAGCGGAAGCTCATCCTCAAGCGG
CTTGAGGGGGAGATCAAGATGAGGCCAAGCGCGGTTGCGGAGATGATGGA
ACAGGAGCCGCGCCTCGCGGAACAGAGCCCCGAGGCTATATCGGAGCGGT
TCACTTGGCTGAAAGAACGGCTAAAGCTTAGCGAGGAGCAGGCGAGGAGC
TTGGTGCACAGAAGACCGTCCGTGCTGTGTCGTGGCGTTAAAGACGGCAT
GGAACCCAAGGTGCGGTGGCTGCAGGAGGAGCTGCGGTTGAGCGACGACG
AAGTCGCTTCCATGGTAACCTCGGCGCCCAACATCCTCAGCGTTAGCGTT
GAAGGGGGCATGGTCCCGAAGCTCGCGTGGCTCTCCAATCGGCTCCGGTT
GTCCCACGAAGAGCTTGCCGTGGTGGTGACGACCTGCCCGCAACTCCTGA
CGAGTAGCGTGGAGGGCGCTCTCGAGCCGAGGCTGAAGTGGCTGCAGGAG
AACCTGCAGATCGGCGGGACCATTTTGCGCGAGAGGGTGTTGTCATTCCC
GTGGCTGCTTAACCTCAGCGAGGAGGGCAAGCTGACGCCTACCTACGAGT
TCTTGAAAGCCGATTTACTTCTGGACGACATCGAGATCAGGAAAACGCTC
TTCCGGAACCCTAGGATGTTCCTGGTACCCCTGCGCCCGGCCCTGGCTTC
TACGAAGAAGTGGCTCTGTCAGAGTCTGGGCATGGAGGAACACGAAGCAG
ACGCTGTCCTGACCAGGGACGCGAGGTTGCTGCTGCGCAGCACGGAGGTG
CTGGACTCCAAGCTAGTGTTTTTCTGTCAGGAAATGGGCGCGACGCTCGA
GGAGTTACGTGAGGTGTTGCTGGCCAGCCCGAACTTGCTGCTTGTGAGCG
TAGAGCTGATGTTGGCACCACGGGTTGCTGCCTTGAAGAGCGCGGGAGTG
GACGTGTCGTTTTCGTTGCATTGGAACACGGTGGCCTTTGGCCCGAGAGG
AAACGTGTTCGACGATTGGGTTGACAGGCAGGCTAAGAGATCGTCAAGAT
GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8544:3192..4343+

>mRNA_M-pyrifera_M_contig8544.19917.1 ID=mRNA_M-pyrifera_M_contig8544.19917.1|Name=mRNA_M-pyrifera_M_contig8544.19917.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2304bp|location=Sequence derived from alignment at M-pyrifera_M_contig8544:3192..4343+ (Macrocystis pyrifera P11B4 male)
AACAGCAGAGCTCCGCGATTTCAACAATTCGGTCGCGTGGGAGGGGAGGG
CGGCAAGGTGGCAGAGGGTCTGTACGAAGACTTTGGCATGAACAACGTGC
GGGAGTATTCCGCGGAGACAGCAGATGAGCGGAAGCTCATCCTCAAGCGG
CTTGAGGGGGAGATCAAGATGAGGCCAAGCGCGGTTGCGGAGATGATGGA
ACAGGAGCCGCGCCTCGCGGAACAGAGCCCCGAGGCTATATCGGAGCGGT
TCACTTGGCTGAAAGAACGGCTAAAGCTTAGCGAGGAGCAGGCGAGGAGC
TTGGTGCACAGAAGACCGTCCGTGCTGTGTCGTGGCGTTAAAGACGGCAT
GGAACCCAAGGTGCGGTGGCTGCAGGAGGAGCTGCGGTTGAGCGACGACG
AAGTCGCTTCCATGGTAACCTCGGCGCCCAACATCCTCAGCGTTAGCGTT
GAAGGGGGCATGGTCCCGAAGCTCGCGTGGCTCTCCAATCGGCTCCGGTT
GTCCCACGAAGAGCTTGCCGTGGTGGTGACGACCTGCCCGCAACTCCTGA
CGAGTAGCGTGGAGGGCGCTCTCGAGCCGAGGCTGAAGTGGCTGCAGGAG
AACCTGCAGATCGGCGGGACCATTTTGCGCGAGAGGGTGTTGTCATTCCC
GTGGCTGCTTAACCTCAGCGAGGAGGGCAAGCTGACGCCTACCTACGAGT
TCTTGAAAGCCGATTTACTTCTGGACGACATCGAGATCAGGAAAACGCTC
TTCCGGAACCCTAGGATGTTCCTGGTACCCCTGCGCCCGGCCCTGGCTTC
TACGAAGAAGTGGCTCTGTCAGAGTCTGGGCATGGAGGAACACGAAGCAG
ACGCTGTCCTGACCAGGGACGCGAGGTTGCTGCTGCGCAGCACGGAGGTG
CTGGACTCCAAGCTAGTGTTTTTCTGTCAGGAAATGGGCGCGACGCTCGA
GGAGTTACGTGAGGTGTTGCTGGCCAGCCCGAACTTGCTGCTTGTGAGCG
TAGAGCTGATGTTGGCACCACGGGTTGCTGCCTTGAAGAGCGCGGGAGTG
GACGTGTCGTTTTCGTTGCATTGGAACACGGTGGCCTTTGGCCCGAGAGG
AAACGTGTTCGACGATTGGGTTGACAGGCAGGCTAAGAGATCGTCAAGAT
GAAACAGCAGAGCTCCGCGATTTCAACAATTCGGTCGCGTGGGAGGGGAG
GGCGGCAAGGTGGCAGAGGGTCTGTACGAAGACTTTGGCATGAACAACGT
GCGGGAGTATTCCGCGGAGACAGCAGATGAGCGGAAGCTCATCCTCAAGC
GGCTTGAGGGGGAGATCAAGATGAGGCCAAGCGCGGTTGCGGAGATGATG
GAACAGGAGCCGCGCCTCGCGGAACAGAGCCCCGAGGCTATATCGGAGCG
GTTCACTTGGCTGAAAGAACGGCTAAAGCTTAGCGAGGAGCAGGCGAGGA
GCTTGGTGCACAGAAGACCGTCCGTGCTGTGTCGTGGCGTTAAAGACGGC
ATGGAACCCAAGGTGCGGTGGCTGCAGGAGGAGCTGCGGTTGAGCGACGA
CGAAGTCGCTTCCATGGTAACCTCGGCGCCCAACATCCTCAGCGTTAGCG
TTGAAGGGGGCATGGTCCCGAAGCTCGCGTGGCTCTCCAATCGGCTCCGG
TTGTCCCACGAAGAGCTTGCCGTGGTGGTGACGACCTGCCCGCAACTCCT
GACGAGTAGCGTGGAGGGCGCTCTCGAGCCGAGGCTGAAGTGGCTGCAGG
AGAACCTGCAGATCGGCGGGACCATTTTGCGCGAGAGGGTGTTGTCATTC
CCGTGGCTGCTTAACCTCAGCGAGGAGGGCAAGCTGACGCCTACCTACGA
GTTCTTGAAAGCCGATTTACTTCTGGACGACATCGAGATCAGGAAAACGC
TCTTCCGGAACCCTAGGATGTTCCTGGTACCCCTGCGCCCGGCCCTGGCT
TCTACGAAGAAGTGGCTCTGTCAGAGTCTGGGCATGGAGGAACACGAAGC
AGACGCTGTCCTGACCAGGGACGCGAGGTTGCTGCTGCGCAGCACGGAGG
TGCTGGACTCCAAGCTAGTGTTTTTCTGTCAGGAAATGGGCGCGACGCTC
GAGGAGTTACGTGAGGTGTTGCTGGCCAGCCCGAACTTGCTGCTTGTGAG
CGTAGAGCTGATGTTGGCACCACGGGTTGCTGCCTTGAAGAGCGCGGGAG
TGGACGTGTCGTTTTCGTTGCATTGGAACACGGTGGCCTTTGGCCCGAGA
GGAAACGTGTTCGACGATTGGGTTGACAGGCAGGCTAAGAGATCGTCAAG
ATGA
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