mRNA_M-pyrifera_M_contig8543.19913.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8543.19913.1
Unique NamemRNA_M-pyrifera_M_contig8543.19913.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8543.19913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8543contigM-pyrifera_M_contig8543:6539..7115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size360
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.4368372-UTR-M-pyrifera_M_contig8543:6538..67551622816763.4368372-UTR-M-pyrifera_M_contig8543:6538..6755Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8543 6539..6755 +
1692278164.113063-UTR-M-pyrifera_M_contig8543:6538..67551692278164.113063-UTR-M-pyrifera_M_contig8543:6538..6755Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8543 6539..6755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.4483283-CDS-M-pyrifera_M_contig8543:6755..71151622816763.4483283-CDS-M-pyrifera_M_contig8543:6755..7115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8543 6756..7115 +
1692278164.1291788-CDS-M-pyrifera_M_contig8543:6755..71151692278164.1291788-CDS-M-pyrifera_M_contig8543:6755..7115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8543 6756..7115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8543.19913.1prot_M-pyrifera_M_contig8543.19913.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8543 6756..7115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8543.19913.1

>prot_M-pyrifera_M_contig8543.19913.1 ID=prot_M-pyrifera_M_contig8543.19913.1|Name=mRNA_M-pyrifera_M_contig8543.19913.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MEPLLARPIVSEIVASLFGLIVSNINRRKPSARTIAIRYQYFAFNRVETL
LSPLGNKYFASKLVEIASKLVEILLLSGQSLPRKGLPTESKAYCSGQYLP
RKIPRPSRNPSLHGPIASEK
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mRNA from alignment at M-pyrifera_M_contig8543:6539..7115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8543.19913.1 ID=mRNA_M-pyrifera_M_contig8543.19913.1|Name=mRNA_M-pyrifera_M_contig8543.19913.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=577bp|location=Sequence derived from alignment at M-pyrifera_M_contig8543:6539..7115+ (Macrocystis pyrifera P11B4 male)
CTGCGGATGACCCGACCCCGCACATAACACCCCGTCGAAAAAACGCATAA
TCTCGGGACGCGCGTAGCAACGTACTTGTATATGATCAAGGAGGCATCAC
TTTTATTCATTTTTTGTGCGCCACCGGGACGAAGAAATTCTGAGAAGCAA
GCCTGATAACACAATTGTTACATCGGGGAACATCGGTACTGCGTTGAGCT
ATCGCCTTCAACCAAACATGGAACCTCTTCTCGCTCGGCCAATCGTTTCC
GAGATAGTAGCCTCTCTGTTCGGGCTAATCGTTTCCAACATAAATCGACG
AAAGCCCTCCGCTAGGACCATTGCCATTCGTTACCAATACTTCGCCTTCA
ACCGAGTCGAAACCCTTCTTTCTCCGCTAGGAAATAAATACTTCGCCTCC
AAACTAGTCGAAATCGCCTCCAAACTAGTCGAAATCCTACTGCTCTCGGG
ACAATCGCTACCGAGAAAAGGCCTCCCAACCGAGTCGAAAGCCTACTGCT
CGGGACAATATCTACCGAGAAAAATCCCCCGACCGAGTAGAAACCCCTCT
CTGCACGGACCAATCGCTTCCGAGAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8543:6539..7115+

>mRNA_M-pyrifera_M_contig8543.19913.1 ID=mRNA_M-pyrifera_M_contig8543.19913.1|Name=mRNA_M-pyrifera_M_contig8543.19913.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig8543:6539..7115+ (Macrocystis pyrifera P11B4 male)
ATGGAACCTCTTCTCGCTCGGCCAATCGTTTCCGAGATAGTAGCCTCTCT
GTTCGGGCTAATCGTTTCCAACATAAATCGACGAAAGCCCTCCGCTAGGA
CCATTGCCATTCGTTACCAATACTTCGCCTTCAACCGAGTCGAAACCCTT
CTTTCTCCGCTAGGAAATAAATACTTCGCCTCCAAACTAGTCGAAATCGC
CTCCAAACTAGTCGAAATCCTACTGCTCTCGGGACAATCGCTACCGAGAA
AAGGCCTCCCAACCGAGTCGAAAGCCTACTGCTCGGGACAATATCTACCG
AGAAAAATCCCCCGACCGAGTAGAAACCCCTCTCTGCACGGACCAATCGC
TTCCGAGAAAATGGAACCTCTTCTCGCTCGGCCAATCGTTTCCGAGATAG
TAGCCTCTCTGTTCGGGCTAATCGTTTCCAACATAAATCGACGAAAGCCC
TCCGCTAGGACCATTGCCATTCGTTACCAATACTTCGCCTTCAACCGAGT
CGAAACCCTTCTTTCTCCGCTAGGAAATAAATACTTCGCCTCCAAACTAG
TCGAAATCGCCTCCAAACTAGTCGAAATCCTACTGCTCTCGGGACAATCG
CTACCGAGAAAAGGCCTCCCAACCGAGTCGAAAGCCTACTGCTCGGGACA
ATATCTACCGAGAAAAATCCCCCGACCGAGTAGAAACCCCTCTCTGCACG
GACCAATCGCTTCCGAGAAA
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