mRNA_M-pyrifera_M_contig85375.19903.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85375.19903.1
Unique NamemRNA_M-pyrifera_M_contig85375.19903.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85375.19903.1 vs. uniprot
Match: A0A518BJK6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BJK6_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 3.230e-5
Identity = 53/165 (32.12%), Postives = 79/165 (47.88%), Query Frame = 1 
Query:   16 RRSLQDLLAEQRAAAEARRAALAPEVEQRLAKLQAAVGARSNLGTEIAAVETLRAELIAFGPTISPLLLTAINPPDKSDATREELAGEVVLVLQAMPLTVVLDELCTMARTGNRIGRRSALDLLGHVERRDRALPVLLTAYASDAA-NRTAALRSICLLGGPEAE 507
            R+S++++L   RAA EA RA+L PEVE  LA +  A    +        V+ LR +++  G     +L+  ++P   +    E  A E   VL +M    +L  L  +A  G+  GR  A+ +LGH        P L   Y S    +R AAL ++  LGG  AE
Sbjct:   25 RQSIEEVLEAARAAREAERASLRPEVESILAGVLEASAEHNQRE-----VDRLRKKIVDLGTGAGLVLIDMLDPGLNAPLGIERRAREAAQVLGSMHGMALLPPLLAIAEEGSLEGRPRAIAVLGHWPDPAIVGPRLERIYESGRQRDREAALSALAQLGGESAE 184
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85375.19903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A518BJK6_9BACT3.230e-532.12Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85375contigM-pyrifera_M_contig85375:53..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816762.7470996-CDS-M-pyrifera_M_contig85375:52..5681622816762.7470996-CDS-M-pyrifera_M_contig85375:52..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85375 53..568 +
1692278163.6681-CDS-M-pyrifera_M_contig85375:52..5681692278163.6681-CDS-M-pyrifera_M_contig85375:52..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85375 53..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85375.19903.1prot_M-pyrifera_M_contig85375.19903.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85375 53..568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85375.19903.1

>prot_M-pyrifera_M_contig85375.19903.1 ID=prot_M-pyrifera_M_contig85375.19903.1|Name=mRNA_M-pyrifera_M_contig85375.19903.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
GQDGPRRSLQDLLAEQRAAAEARRAALAPEVEQRLAKLQAAVGARSNLGT
EIAAVETLRAELIAFGPTISPLLLTAINPPDKSDATREELAGEVVLVLQA
MPLTVVLDELCTMARTGNRIGRRSALDLLGHVERRDRALPVLLTAYASDA
ANRTAALRSICLLGGPEAEVLL
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mRNA from alignment at M-pyrifera_M_contig85375:53..568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85375.19903.1 ID=mRNA_M-pyrifera_M_contig85375.19903.1|Name=mRNA_M-pyrifera_M_contig85375.19903.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig85375:53..568+ (Macrocystis pyrifera P11B4 male)
GGTCAGGACGGCCCACGGCGCTCGCTCCAGGACCTGCTCGCCGAGCAGCG
CGCCGCCGCCGAGGCGCGCCGCGCAGCGCTCGCGCCGGAGGTCGAGCAGC
GCCTCGCCAAGCTGCAGGCCGCGGTGGGCGCGCGCAGCAACCTGGGCACC
GAGATCGCCGCCGTCGAGACCCTGCGCGCCGAGCTCATCGCGTTCGGCCC
GACGATCTCGCCGCTGCTGCTCACCGCCATCAACCCGCCGGACAAGAGCG
ACGCCACCCGCGAGGAGCTCGCCGGCGAGGTCGTCCTGGTGCTCCAGGCG
ATGCCGCTCACGGTCGTGCTCGACGAGCTCTGCACCATGGCGCGCACGGG
CAACCGCATCGGGCGCCGTTCGGCGCTCGACCTGCTCGGCCACGTCGAGC
GCCGCGACCGCGCGCTGCCCGTGCTCTTGACCGCGTACGCGAGCGATGCC
GCGAACCGCACGGCCGCGCTGCGCTCGATCTGCTTGCTCGGCGGCCCCGA
GGCCGAGGTGTTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85375:53..568+

>mRNA_M-pyrifera_M_contig85375.19903.1 ID=mRNA_M-pyrifera_M_contig85375.19903.1|Name=mRNA_M-pyrifera_M_contig85375.19903.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig85375:53..568+ (Macrocystis pyrifera P11B4 male)
GGTCAGGACGGCCCACGGCGCTCGCTCCAGGACCTGCTCGCCGAGCAGCG
CGCCGCCGCCGAGGCGCGCCGCGCAGCGCTCGCGCCGGAGGTCGAGCAGC
GCCTCGCCAAGCTGCAGGCCGCGGTGGGCGCGCGCAGCAACCTGGGCACC
GAGATCGCCGCCGTCGAGACCCTGCGCGCCGAGCTCATCGCGTTCGGCCC
GACGATCTCGCCGCTGCTGCTCACCGCCATCAACCCGCCGGACAAGAGCG
ACGCCACCCGCGAGGAGCTCGCCGGCGAGGTCGTCCTGGTGCTCCAGGCG
ATGCCGCTCACGGTCGTGCTCGACGAGCTCTGCACCATGGCGCGCACGGG
CAACCGCATCGGGCGCCGTTCGGCGCTCGACCTGCTCGGCCACGTCGAGC
GCCGCGACCGCGCGCTGCCCGTGCTCTTGACCGCGTACGCGAGCGATGCC
GCGAACCGCACGGCCGCGCTGCGCTCGATCTGCTTGCTCGGCGGCCCCGA
GGCCGAGGTGTTGCTCGGTCAGGACGGCCCACGGCGCTCGCTCCAGGACC
TGCTCGCCGAGCAGCGCGCCGCCGCCGAGGCGCGCCGCGCAGCGCTCGCG
CCGGAGGTCGAGCAGCGCCTCGCCAAGCTGCAGGCCGCGGTGGGCGCGCG
CAGCAACCTGGGCACCGAGATCGCCGCCGTCGAGACCCTGCGCGCCGAGC
TCATCGCGTTCGGCCCGACGATCTCGCCGCTGCTGCTCACCGCCATCAAC
CCGCCGGACAAGAGCGACGCCACCCGCGAGGAGCTCGCCGGCGAGGTCGT
CCTGGTGCTCCAGGCGATGCCGCTCACGGTCGTGCTCGACGAGCTCTGCA
CCATGGCGCGCACGGGCAACCGCATCGGGCGCCGTTCGGCGCTCGACCTG
CTCGGCCACGTCGAGCGCCGCGACCGCGCGCTGCCCGTGCTCTTGACCGC
GTACGCGAGCGATGCCGCGAACCGCACGGCCGCGCTGCGCTCGATCTGCT
TGCTCGGCGGCCCCGAGGCCGAGGTGTTGCTC
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