mRNA_M-pyrifera_M_contig8537.19900.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8537.19900.1
Unique NamemRNA_M-pyrifera_M_contig8537.19900.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8537.19900.1 vs. uniprot
Match: A0A6H5KZW9_9PHAE (XRN_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZW9_9PHAE)

HSP 1 Score: 386 bits (991), Expect = 9.940e-124
Identity = 220/416 (52.88%), Postives = 279/416 (67.07%), Query Frame = 1 
Query:    1 DNFLIDGEGRTFCWEFLSDLLKDMA------GEGDVQAA-SKMDRNSRYPPAAAMLNLAVQQGKLGEGVELQLHRFPVPEEGESSEEDETTQWRSSTTVRGREYSW--IHTTPKKKVAKHEAAAMLLEELLPDVYQKYLDQETARLLEESGRSEDDEDIDLLDLAVDDEDSESWQTDDENDRSTGWTKKERSLFDVEDYLSGILWNLQMYVDGYTPNFYWRYSLPYGPSCSDIVSWIR-ENPGLLGKMQPPVSSAPPLPAAVACLCMMPMTKDGREFLPKRLQPLVEPGSPLREALEWTGVKAGLDIPKILRVMQQEAPLELVKFYDGTHNSHAWKVVYLDSTFPPRKTLPPRSPTKDFASLEETNHIT--KLQRIQATSMAATSAPRCLPWSSPGDPTTWQQPQGVQGQPYKKAF 1212
            DNFLIDG+ ++ CWEFL DLL DM        EG +  +  +MD N+RYPPA ++  +AVQQGKLG+GVE+++H       G S     T +W+S T VRG+EY++  +H   KKK   H AA  LLEELLPD+Y ++L+QE AR+LE++   +++EDID    +  DEDS +     EN R  G  K +  LFDVE +L G+LWNLQMY+DGY PNFYWRYS  Y PSC+DIVSW++  +   L  +  PV  APPLPA++ACLCM+PMT  G+ FLPKRLQPLV PGSPL EALEW GV +GLDI KIL+  Q   P EL +F+DG H+S AWKVVYLD +   R    P  P+KDF  L+ + H    K QRIQ TSM+ATSAPR LPWSS  D ++ ++ QGV   PYKKA 
Sbjct:  285 DNFLIDGDKKSICWEFLQDLLADMIPSIVAEAEGYLAVSLEQMDLNNRYPPAGSVFKMAVQQGKLGDGVEIEVHDLSDEVSGSSGG---TKKWKSVTWVRGKEYTYHFLHVG-KKKTVMHLAAEKLLEELLPDLYDEFLEQEKARILEQAQLDQENEDID----SNLDEDSGA-----ENGRERGSRKGKTPLFDVESFLLGVLWNLQMYIDGYVPNFYWRYSPRYSPSCADIVSWVKLASEDKLANLAVPVIGAPPLPASIACLCMLPMTDRGKSFLPKRLQPLVRPGSPLLEALEWRGVSSGLDIAKILKTCQNLMPQELSEFHDGAHSSCAWKVVYLDLSARQRTPPAPPPPSKDFPPLDSSRHSNSYKFQRIQVTSMSATSAPRNLPWSSASDSSS-EEMQGVLDLPYKKAL 686
[Close]
BLAST of mRNA_M-pyrifera_M_contig8537.19900.1 vs. uniprot
Match: A0A836C8H5_9STRA (DRBM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.890e-21
Identity = 126/455 (27.69%), Postives = 191/455 (41.98%), Query Frame = 1 
Query:    4 NFLIDGEGRTFCWEFLSDLLKDMAGEGDVQAASKMDRNSRYPPAAAMLNLAVQQGKLGEGVELQLHR--------------------FPVPEEGESSEEDETTQWRSSTTVRGREYSWIHTTPKKKVAKHEAAAMLLEELLPDVYQKYL---DQETARLLEESGRSE-------------------DDEDIDLLDLAVDDEDSESWQTDDENDRSTGWTKKERSLFDVEDYLSGILWNLQMYVDGYTPNFYWRYSLPYGPSCSDIVSWIRENPGL-----------LGKMQPPVSSAPPLPAAVACLCMMPMTKDGREFLPKRLQPLVEPGSPL-----------------REALEWTGVKAGLDIPKILRVMQQEAPLELVKFYDGTHNSHAWKVVYLDSTFPPRK----TLPPRSPTKD-FASLEETNHITKLQRIQATSMAATSAPRCLPWS 1143
            +F+ID E + F W FL   LK  A  G   A        + P  A  +N AVQ+ K+  G   +L R                    + V  E E     ++ ++  S  V G   +       +K A+  AA ++L+EL P++Y+ YL    +  A+LL  + +                     DD  +DL DL  D E S+ ++ + E DR+ G     +   DV+ YL+G+LWN+ MY DG+ P+ YWRY   Y PSC D+  W+ +   L           L  +  PVS  P LP+ VACL MM  + +GR+ +P+RL+ L++  SP+                 + A      +   DI  +L  +    P  L  F +G      W V+   S   PR      LPP  P  D F  +           ++  +M ATS+P    W+
Sbjct:  480 SFIIDSERQRFNWPFLLRFLK-FATMGAAMAL-------QGPTPAQWVNAAVQK-KVIRGGRKKLIRGGQXXXXXXXXXXXXXXXVTYDVFSE-EPEHNGDSPRFGVSVAVAGTTLTVPAEHASQKDARRAAATLVLQELAPELYEDYLVARQRHDAQLLAAAQQRRXXXXXXXXXXXXXXXXXLADDXXLDL-DLNGD-ESSDEYEYEPEWDRAPG-----KGGHDVKAYLTGVLWNIHMYQDGFAPDNYWRYGHRYAPSCHDMADWVEQRIALEASGADEQGQPLTDVASPVSRKPALPSDVACLAMM--SAEGRDLVPRRLRALLDADSPVGNMFAPPASXXXXXXXXQPAAGVVPQRREFDIDALLAAVNDHCPEALNGFAEGRQEVK-WTVIQHASQPLPRGCTPLNLPPPIPPLDRFLKVSP-------DTVKCVTMPATSSPPGRSWA 907
[Close]
BLAST of mRNA_M-pyrifera_M_contig8537.19900.1 vs. uniprot
Match: A0A7S0E9R5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E9R5_9CRYP)

HSP 1 Score: 84.0 bits (206), Expect = 6.180e-14
Identity = 45/115 (39.13%), Postives = 66/115 (57.39%), Query Frame = 1 
Query:  520 STGWTKKERSLFDVEDYLSGILWNLQMYVDGYTPNFYWRYSLPYGPSCSDIVSWIR-ENPGLLGKMQPPVSSAPPLPAAVACLCMMPMTKDGREFLPKRLQPLV-EPGSPLREAL 858
            ++ + K  +  F++ DY  G+LWN+QMY+DGY P++++ Y+  + P    IV WI  E+ G   ++  PVS  P L    ACL MMP T    E +PK  Q L+ EP S L + L
Sbjct:  315 NSAFDKVSKLPFNIPDYFEGLLWNIQMYIDGYVPDYFYTYNFRFAPDAKSIVKWIESEDFGPFPELSIPVSDCPALQPLHACLAMMPSTSP--EHVPKAYQALIREPSSRLYQVL 427
[Close]
BLAST of mRNA_M-pyrifera_M_contig8537.19900.1 vs. uniprot
Match: A0A4D9CTZ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTZ4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.210e-13
Identity = 94/360 (26.11%), Postives = 157/360 (43.61%), Query Frame = 1 
Query:   85 DVQAASKMDRNS---RYPPAAAMLNLAVQQGKLGEGVELQLHRFPVPEEGESSEEDETTQWRSSTTVRGREYSWIHTTPKKKVAKHEAAAMLLEELLPDVYQKYLDQETARLLEESGRSEDDEDIDLLDLAVDDEDSESWQTDDENDRSTGWTKKERSLFDVEDYLSGILWNLQMYVDGYTPNFYWRYSLPYGPSCSDIVSWIR---ENPGLLGKMQPPVSSAPPLPAAVACLCMMPMTKDGREFLPKRLQPLVEPGSPLREALEWTGVKAGLDIPKILRVMQQEAPLELVKFYDGTHNSHAWKVVYLDS--TFPPRKTLPPRSPTKDFASLEETNHITKLQRIQATSMAATSAPRCLPW 1140
            D+ A S +D  S   R P  A +LN  +Q+ K+          F +  EG++S       W ++ T+  ++++     P  K AK     ++L+E++P+ Y  Y        L+    S  +                      E++    W  +E+ LFD E YL G+LWN+QMYVDGY P++ + Y   + PS   +  +IR   +N      +  P S  PPL  A+ACL +MP  + G   +P+ L  ++E  + + +  E TG    L++  ++  +    P  LV+    + N H W  +  ++    P   + PP S          + H+  L R  A  +AAT +P    W
Sbjct:   23 DLAARSFVDDLSVLLRGPTPAGVLNELMQKKKVPP--------FEMEFEGQASA------WTATLTLEEKKFTLSEPQPTMKAAKQAICELVLKEVVPEAYATYFP------LDGKDGSVGEXXXXXXXXXXXXXXXXXXXXXGEDEEVVDWRYEEK-LFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMP--RWGLHLVPENLSSVLESSARVNKMYE-TGAAFSLNL--LMDTVNSSHP-HLVR----SQNFH-WTEIKANTPCASPTPSSFPPSSSXXXXXXXSLSLHLPPLSR--ARKVAATQSPPLRSW 348
[Close]
BLAST of mRNA_M-pyrifera_M_contig8537.19900.1 vs. uniprot
Match: A0A7S4J905_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4J905_GUITH)

HSP 1 Score: 81.3 bits (199), Expect = 1.430e-13
Identity = 47/128 (36.72%), Postives = 67/128 (52.34%), Query Frame = 1 
Query:  535 KKERSLFDVEDYLSGILWNLQMYVDGYTPNFYWRYSLPYGPSCSDIVSWIR-ENPGLLGKMQPPVSSAPPLPAAVACLCMMPMTKDGREFLPKRLQPLV-EPGSPLREALEWTGVKAGLDIPKILRVM 912
            K  R  F++ DY   +LWN+QMY+DGY P++++ Y+  + P    IV WI  E+     ++  P S    L    ACL MMP T    EF+PK  Q L+ EP S L + L         D+P+ L +M
Sbjct:  130 KVSRMPFNIPDYFESLLWNIQMYIDGYVPDYFYTYNFKFAPDAKSIVKWIESEDFAPFPELNIPYSECRALQPLHACLAMMPSTSP--EFVPKAYQSLICEPSSRLYQVLNVDS--KDFDVPEFLDIM 253
[Close]
BLAST of mRNA_M-pyrifera_M_contig8537.19900.1 vs. uniprot
Match: W7T206_9STRA (Exoribonuclease 2 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T206_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.990e-11
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 1 
Query:  508 ENDRSTGWTKKERSLFDVEDYLSGILWNLQMYVDGYTPNFYWRYSLPYGPSCSDIVSWIR---ENPGLLGKMQPPVSSAPPLPAAVACLCMMPMTKDGREFLPKRLQPLVEPGSPLREALEWTGVKAGLDI 891
            E +    W  +E+ LFD E YL G+LWN+QMYVDGY P++ + Y   + PS   +  +IR   +N      +  P S  PPL  A+ACL +MP  + G   +P+ L  ++E  + + +  E TG    L++
Sbjct:   14 EEEEVVDWRYEEK-LFDEEQYLRGLLWNVQMYVDGYCPDYQYAYRHRFAPSAQCLADFIRNQTKNNASSFALSVPTSLTPPLHPALACLAVMP--RWGLHLVPENLSSVLESSARVNKMYE-TGAAFSLNL 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig8537.19900.1 vs. uniprot
Match: A0A2V3J5K0_9FLOR (5'-3' exoribonuclease 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5K0_9FLOR)

HSP 1 Score: 74.7 bits (182), Expect = 1.040e-10
Identity = 62/204 (30.39%), Postives = 98/204 (48.04%), Query Frame = 1 
Query:  550 LFDVEDYLSGILWNLQMYVDGYTPNFYWRYSLPYGPSCSDIVSWIRENPGLLGKMQPPVSSAPPLPAAVACLCMMPMTKDGREFLPKRLQPLVEPGSPLREALEWTGVKAGLDIPKIL----RVMQQE-APLELVKFYDGTHNSHAWKVVYLDSTFPPRKTLPPRSP--TKDFASLEETNHITKLQRIQATSMAATSAPRCLPW 1140
             +D   ++  +LWN+QMYVDGY  ++ +RY  PYGP  ++I+++IR + G     Q PVS+  PL    A + ++P  K  +  LPK LQ + +    +R+     G K  +D+P ++    R+ + E +  EL++ + GT          L     P+  LP  +P   +     EE   I     I     A TSAP C  W
Sbjct:  442 FYDTNRWVRALLWNIQMYVDGYCGDYSFRYGKPYGPPITEILNYIRNHDGDPFLHQAPVSNWRPLLPHQAAMAVLP--KQAKHLLPKPLQRIYDDPVAVRKIF---GSKDDVDVPSLIAETDRIPKSEFSSEELLRTFHGTP--------ILLRHQRPQDQLPYSNPWVRRPGQKFEE---IASRPVIYRAPFAVTSAPPCYKW 629
[Close]
BLAST of mRNA_M-pyrifera_M_contig8537.19900.1 vs. uniprot
Match: A0A7S3EG98_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EG98_9RHOD)

HSP 1 Score: 69.7 bits (169), Expect = 7.060e-10
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:  553 FDVEDYLSGILWNLQMYVDGYTPNFYWRYSLPYGPSCSDIVSWIRENPGLLGKMQPPVSSAPPLPAAVACLCMMPMTKDGREFLPKRLQPLVEPGSPLREALE 861
            +DVE Y+ G+LWN+QMY+DGY P+  + Y   Y P    ++ +  E  G+  ++  PVS+ P + + +A   M+P         P RLQPLV+ G+ + + +E
Sbjct:   83 YDVETYIKGLLWNMQMYIDGYPPDQLFYYRFKYAPPVDAVLDFFLEK-GMYTQVDLPVSNRPAITSQLALTLMLPSA--AWSLAPGRLQPLVKSGASISDFVE 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig8537.19900.1 vs. uniprot
Match: A0A7S2ZT58_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT58_9RHOD)

HSP 1 Score: 69.7 bits (169), Expect = 3.490e-9
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:  553 FDVEDYLSGILWNLQMYVDGYTPNFYWRYSLPYGPSCSDIVSWIRENPGLLGKMQPPVSSAPPLPAAVACLCMMPMTKDGREFLPKRLQPLVEPGSPLREALE 861
            +DVE Y+ G+LWN+QMY+DGY P+  + Y   Y P    ++ +  E  G+  ++  PVS+ P + + +A   M+P         P RLQPLV+ G+ + + +E
Sbjct:  342 YDVETYIKGLLWNMQMYIDGYPPDQLFYYRFKYAPPVDAVLDFFLEK-GMYTQVDLPVSNRPAITSQLALTLMLPSA--AWSLAPGRLQPLVKSGASISDFVE 441
[Close]
BLAST of mRNA_M-pyrifera_M_contig8537.19900.1 vs. uniprot
Match: A0A7S2ZT80_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT80_9RHOD)

HSP 1 Score: 69.7 bits (169), Expect = 3.590e-9
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:  553 FDVEDYLSGILWNLQMYVDGYTPNFYWRYSLPYGPSCSDIVSWIRENPGLLGKMQPPVSSAPPLPAAVACLCMMPMTKDGREFLPKRLQPLVEPGSPLREALE 861
            +DVE Y+ G+LWN+QMY+DGY P+  + Y   Y P    ++ +  E  G+  ++  PVS+ P + + +A   M+P         P RLQPLV+ G+ + + +E
Sbjct:  361 YDVETYIKGLLWNMQMYIDGYPPDQLFYYRFKYAPPVDAVLDFFLEK-GMYTQVDLPVSNRPAITSQLALTLMLPSA--AWSLAPGRLQPLVKSGASISDFVE 460
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8537.19900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KZW9_9PHAE9.940e-12452.88XRN_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836C8H5_9STRA7.890e-2127.69DRBM domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S0E9R5_9CRYP6.180e-1439.13Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A4D9CTZ4_9STRA1.210e-1326.11Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S4J905_GUITH1.430e-1336.72Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
W7T206_9STRA4.990e-1135.11Exoribonuclease 2 (Fragment) n=1 Tax=Nannochlorops... [more]
A0A2V3J5K0_9FLOR1.040e-1030.395'-3' exoribonuclease 1 n=1 Tax=Gracilariopsis cho... [more]
A0A7S3EG98_9RHOD7.060e-1034.95Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZT58_9RHOD3.490e-934.95Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZT80_9RHOD3.590e-934.95Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8537contigM-pyrifera_M_contig8537:4753..11744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.8
Seed ortholog evalue1.6e-102
Seed eggNOG ortholog2880.D7G8V1
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryother localisation
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2045@2759
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Exons6
Model size1243
Cds size1239
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8537.19900.1prot_M-pyrifera_M_contig8537.19900.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8537 4755..11744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816762.569127-CDS-M-pyrifera_M_contig8537:4754..50281622816762.569127-CDS-M-pyrifera_M_contig8537:4754..5028Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 4755..5028 -
1692278163.5573838-CDS-M-pyrifera_M_contig8537:4754..50281692278163.5573838-CDS-M-pyrifera_M_contig8537:4754..5028Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 4755..5028 -
1622816762.5823271-CDS-M-pyrifera_M_contig8537:5770..61381622816762.5823271-CDS-M-pyrifera_M_contig8537:5770..6138Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 5771..6138 -
1692278163.5729327-CDS-M-pyrifera_M_contig8537:5770..61381692278163.5729327-CDS-M-pyrifera_M_contig8537:5770..6138Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 5771..6138 -
1622816762.5945613-CDS-M-pyrifera_M_contig8537:7155..72931622816762.5945613-CDS-M-pyrifera_M_contig8537:7155..7293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 7156..7293 -
1692278163.5982082-CDS-M-pyrifera_M_contig8537:7155..72931692278163.5982082-CDS-M-pyrifera_M_contig8537:7155..7293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 7156..7293 -
1622816762.6110165-CDS-M-pyrifera_M_contig8537:8285..83741622816762.6110165-CDS-M-pyrifera_M_contig8537:8285..8374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 8286..8374 -
1692278163.6084483-CDS-M-pyrifera_M_contig8537:8285..83741692278163.6084483-CDS-M-pyrifera_M_contig8537:8285..8374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 8286..8374 -
1622816762.6235924-CDS-M-pyrifera_M_contig8537:9668..98851622816762.6235924-CDS-M-pyrifera_M_contig8537:9668..9885Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 9669..9885 -
1692278163.617953-CDS-M-pyrifera_M_contig8537:9668..98851692278163.617953-CDS-M-pyrifera_M_contig8537:9668..9885Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 9669..9885 -
1622816762.636273-CDS-M-pyrifera_M_contig8537:11591..117441622816762.636273-CDS-M-pyrifera_M_contig8537:11591..11744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 11592..11744 -
1692278163.628499-CDS-M-pyrifera_M_contig8537:11591..117441692278163.628499-CDS-M-pyrifera_M_contig8537:11591..11744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8537 11592..11744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8537.19900.1

>prot_M-pyrifera_M_contig8537.19900.1 ID=prot_M-pyrifera_M_contig8537.19900.1|Name=mRNA_M-pyrifera_M_contig8537.19900.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=413bp
DNFLIDGEGRTFCWEFLSDLLKDMAGEGDVQAASKMDRNSRYPPAAAMLN
LAVQQGKLGEGVELQLHRFPVPEEGESSEEDETTQWRSSTTVRGREYSWI
HTTPKKKVAKHEAAAMLLEELLPDVYQKYLDQETARLLEESGRSEDDEDI
DLLDLAVDDEDSESWQTDDENDRSTGWTKKERSLFDVEDYLSGILWNLQM
YVDGYTPNFYWRYSLPYGPSCSDIVSWIRENPGLLGKMQPPVSSAPPLPA
AVACLCMMPMTKDGREFLPKRLQPLVEPGSPLREALEWTGVKAGLDIPKI
LRVMQQEAPLELVKFYDGTHNSHAWKVVYLDSTFPPRKTLPPRSPTKDFA
SLEETNHITKLQRIQATSMAATSAPRCLPWSSPGDPTTWQQPQGVQGQPY
KKAFYRRESGSGA
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mRNA from alignment at M-pyrifera_M_contig8537:4753..11744-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8537.19900.1 ID=mRNA_M-pyrifera_M_contig8537.19900.1|Name=mRNA_M-pyrifera_M_contig8537.19900.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6992bp|location=Sequence derived from alignment at M-pyrifera_M_contig8537:4753..11744- (Macrocystis pyrifera P11B4 male)
GACAACTTTTTGATAGACGGGGAAGGGCGAACATTTTGCTGGGAGTTTTT
GTCGGACCTGCTGAAGGACATGGCGGGTGAGGGAGACGTCCAAGCCGCCA
GCAAGATGGACAGGAACAGTAGGTACCCTCCTGCAGCAGCGATGCTCAAC
CTGGTGAGCTATTAGAAACCGAGCGGGAGGCAACATCACAATAATAGCAC
GCTGCGTGATAACGCTTAGCCCCGTTGTAGCTTAGTTTGCCCGTTTACGT
ATGTAGCTGGTGCATGCCGTACGCTGATTTCACTTTTGTCTTGTTTGAGG
TGCACAGTATGTATATACATACGATGCACGTCAGCTTTATGATGGGTACT
ATTACTATTAATACTGTTGTGCACCTGGTGTGGATACCAGGTCCTATCCC
CTAGATCGTACCGCCTCGTTGTCACTACAATCCTTGAAGGCCTTCCTGGC
TCCTCGGGGGTACTCTGAGATTGCCTTTCGTTGCTGACCCCCGAGAGTGT
GGAAACGCCACACGACCCCACCTCGGTCTGTCTCCACACCCACATCTAAG
AAGAGAATTACCTGCTGCGAGACTAGCGTCCCACACTGGTATTGTTTTGT
TTTTCCTGAGGTATTCTTCCGCTCAGGGGTTAGTGGGCCCTGTCTGCTGT
CACCACGGACTAGATTTTTAGCGATGGATTAGAGTGAGATCATTAGCAAC
AACAGCGACAACAAAACAACACAACAGCACGTTTAAGGGGGCACTTTTGG
ACCCGATATTTTGTGACTGACGGGGCTCTCCAACTGTAAATAGACTGAGG
AACTGCCCAATATTAATAGGAATAGTAATAGTATTGGTAATAGTGTGATA
CTAGGATGTTTGCGAAGAATTTGGTTGGGTTAGTTTTCTTGTAGTACATT
TCCTATACAACAGCACTCCCAACCTACGAAAATTGAATTGCTGTGGGAAA
AAGTGACCAAAGTGATGGTCTTAACTCCCCGAGTATTAATGGCTTGGGTA
GCTCTGTGAGTTGGGTAACAAACGGAGCAACTTCTGCTTCACCTGTTTAA
CCAATTAGCTCCCCATGTTTGTCGGTTTTACATATTTTTATACCTCACAA
CCAAAATTGATTATCACAAACAGCCTACGAAAAGCAGTGTTGCAATCCAA
TTCGTGCTCTGCAATTTATTCGTGACTCGCCTATGTAGCTATTATGTATG
AGGGTGTTCCTCGGGTTGCGCTGTCATTTTTCTCAAACGTCGGTTATGGT
GAGGTACACGGGTATAGTGAGTCAAGCTCCTAACTTTAGGAACCTGAATA
AAGGTGGCCATGATACCCCCTGTATCCCCTCTATTTATGCGTGGGGTAGG
ATAAGGTGATGTAGCCGAACGGGATGTAACATCAGAGCCTGCTGTGTCAT
GGTGTTTGGCCTCGGCGCAGCTTCGATGTTTTCGCTATCAATAGCGATGT
AGAATGTAGAACATTGCAGCAGTATCGGGGCATTCTAGAGCTGCGCCTGC
CGTCAGCGCTTCGCTAGTGATGTAGATGTACGAAGCAACATATAGCAGCA
GCCCCAGGCATTCTTGAGCTGCGCCTGCCGTTACCACCCGAGATTATGGT
GAAAACATTGAGACGTTTTGACGGAGTATTTAGGGACCATTAGTAGCATT
TCCGACGCTTTTACAAACCAGGGCAAGAGGTAAGGCTTTGCTACAAGGAG
TGCGCTGCGAGATTGGGGCGCCCTGCCTCTACCCCATGCATGCAGATTCA
TAGCAGAAGGTAGTGGTCAGGCCGTGAACCCTTGCCGGTGGTGCGTGACT
TTCGACGGTCTTAACAATTACCATTTGACGCGTGATGCTCGCTTCACCGG
CACATGCAGGCGGTGCAGCAGGGAAAGCTTGGAGAAGGCGTGGAACTACA
ACTGCACAGGTTCCCCGTGCCAGAGGAGGGGGAGTCTTCGGAAGAGGATG
AAACGACGCAGTGGAGGTCGAGCACGACCGTGAGGGGGCGTGAGTACAGC
TGGATACACACCACGCCCAAGAAAAAGGTGGCTAAGCATGAGGCGGCCGC
GATGCTGTTGGAGGAGCTGTTGCCAGGTAAAGAGGGGATAGGCACAGTAG
AGACTTGCTACTGTGCTAAACCGCAATAAAGACAAGTGTATAGTAATGGC
CTCCTTTAGCCTTTCCCATTGATCGAGGACGTTTTCCTAGAAACCTCCTC
TCGGGTTCGGGGTTTAGCCTTCTCAGTGGTCGAAGATTTTTTCCTGGAAC
CTTGTCTCCGGCTTCGGGGTTAAGGTTAAGGAACGTTAAAGGTAGAAAGA
AGTACACGGGACCTTTGAACCGCCAAATCTAGTTTCCCCTCTACCGCCTG
CGAATATTTTCAACAGGATCTCTGAGGCCATGCTCTCTTGTATTCACTAA
CACTTGCCATCGGATCTCGATGCGAGAAGTGTTGCGGCTGCGCGTGCGAA
AAAACGGACGATGGTGATATGACGTTATTGACGTGTGGTGTTCGGACAAG
GGAAGGGCGGGTGGCAATACTGGGTAACGGAGCGCAATGGTGATGCCTTA
ATTAGCATATACGAACTATATTTTTTTCTGTCTATTTTTCCATCCCATCT
ATTTTCTTTGCCCTACTTCTTCACTTTTCCAGCTCCCTCTATTTCGTAAC
TAAAATCCGGGGTCACATAGCGGGTATCCCCCCCCCTCCCCACTACGGTG
CGTGCCTTCCTTTTTATCGCGGGAAGAGTTGAGCACTTTCTTCCCTAGTC
AGCTCGCGTCGAATTGTGCGTACATGTTTCTACAAACGCTAGTCGCTTTC
TGCAGCCAACTTTTGCACAGGACGAAAAATCCCTCTGGGGGGGTCTCCAA
CACGCGAAATCGAGCTTTGTGCCGTATGACACTATCACCCTAGGGTGATA
AGATATCACACCCCCTCGGACGGTTTTCAAAGCGGGGTTTCTCGATAACT
GGGAGGGCGTACTGAGTACGACCACCGATAAGTCTATGCAGTCTTCTCGA
CAGAATCTTTCCAAAGCCACCATTTTCGTTGTGTGTGTGCCCCTCATGTT
TTGGAGGAAACCGAGTCTAAAGTTCGTCCCAGGGGGTGTGTTATCGTATC
ACCCAGTGTGATAGCGTGATACGATACTTGCGAGGCTTAACCACTAGACT
ACCGGGTGCGCCACTGGGTGGACCGGCGGCATAACGATATGGCATCGCGG
TCGCACGCACATGCGTCTTTCTGTCAGAGCAATGAACCCGAAAGGACACG
AAGAGGCACTACACAGTAGCTGGACATGCGACCTTAACTGCGTTTCGTTC
GTTGTCAGTTAATGCAAAACGCCGTGCGGTGATGTGACGTGATGTGATGG
CGCTTTCGCGCCTCGGACAGATGTGTACCAGAAGTATTTGGACCAGGAAA
CAGCTCGGCTTCTGGAAGAATCTGGCCGCAGCGAGGATGACGAAGACATC
GACCTTCTGGTGGGTGGTGCCCCGCCCTTTGCCTTTCTGACTGCAAATTG
CAAGGATTATTCATTTTCTCCGCGTGAATCGGGCGTTGTTTTGGTTTGCT
TCCCAGCCCGATACCGGTGGTCTGTCTCCAGTGTCTTCGATCAACCCTTG
GGACTGGCTATGTACCCGCATACACTTACATGGCCGATACGTGATGGGAA
TGTGAATGTTACACCGGTGCTACAACAGCAGTTTCTTTCCAAACATGTTC
TCTCAAGAGAGGATGGTGATGTACGAAGTACCTGGTAGTTGATTAAACGT
CCAAGCTGTCTTCCTTGTGGCAAAGGTCTTGGCGGTCAACCGCGCCTGCA
CTTTGGTGGAGAAATACTATCCTAGCAAGATTATTTTTATACGTAGTAGC
TCCTGACAGCCACTGTCTTCTCCTGCCAGTGTTAGGCTTGTACAGTTAGT
AGCCAGTTGCACGTAGCCAGTAGGCTTGTACAGTAGCCTGTGCCGCGGCC
GGTTTGCCCCGAACGAAAGCCACGTCGACGGGCATCACACGACGCCCCCG
CCGTATGGTCCTACATAAACTTACTCCACACCAGTGCCCCGGAGATGCTC
CACCGCATTTCACCTCTTTCTGCTGTATGAATAGGAGGCGCTGCCAGCGT
CGCCTTTCGGCTTATTATAACGTTTTGAGTTGTCAGACGTGAGACGGAAC
AAATTATGAAAAACACGTGACGATGTCGGCATCGGCCTCGCGGAGCAAGG
TGTGCTGCTGGTCTGCTGCTGGGTTAGGGGATGGTATACTTGATGTCCGA
ATTGCATGATGCAAGACGTTGTACAACACCGCGCGAACCGTATTAGCTCA
GTGTGGTGCTGCTCGTTCTGCTGCCCGCTCACCATGGACGGTTGGTAGGA
CCGCACTTTATGTGTGTTTGTCGCTGTGGCATGGTACCCTACAGGGTTCA
TTCAGCTGAGCTACTGTACCAATCACTCCAACCCTCCTTGCACGTGTTTA
GGACCTTGCGGTGGACGACGAGGACTCGGAATCTTGGCAAACTGACGACG
AGAACGACCGCAGCACGGGATGGACAAAAAAGGAGAGGTCTCTTTTCGAC
GTGGAGGACTATCTCTCGGGCATCCTCTGGAACTTGCAGGTGATGGTTTC
GGGTTGGGATGTTTTTTATGTCTCTGCAACCAACCTCTGCCGCCTGCAAC
GTGTGCGCTGTTATTGCTCCTGTTGGGGACCCAGGTACGGTATGTAGTGG
TTTACCACATATTCGAGAGAATAATTGACACGCACTGTGTACGAAACGAA
TAGTAACTAGCCCTAGCTCTAAGCCCGAGCCAATCAGAGCAACGCTAACC
TTGACCCTGAGCCAATCAGACCAAATCTCGAACAGGTGGCGAGCTCTACT
GCCCATATAACGACAGTTGCTATATTTAGTGCGATAGTTATTACTATTGC
CAAGCGTCTAGGAAGAGAGCGTGCAGCAGTGCGAGTACATCCATACTGCG
CGCTCGTCGTACAGCTAGCTCCCCACCAGATACCAGGTACATTACAGTTC
CGACATACCCCTTGACCGCGACAGCCCGCCGCTGCTTCATGTGGCCGATG
CTGTAGTCATCAATATTTTGTTTTCGAATTTCTCGCTTTCTCCTCGAACG
CCCGCCATTTCTGCGGGAAACCATGTGCTGTTTTTTTTAAACGTTCCTGC
GCCACGCGGCTCGCAAGCGCATGCCGCCTACGTTTTATTGCAGCGGTTGG
TGGGTATAGCGCAACAGTTTTTTTTTACCGTCTCTTTTTAGCCCGCGTTT
CTCCTTCTGTCGTCACGCGACTACCGCCATGAGTACACCCCCCCCCTCTA
TCTCCTCCTCCTTCTCCTCTTCCTCTGCCTCATCCACTAGTGTATTTTTA
ATTGGCCTGGCTTCGACGAAAATGGTTGGTAGCCCATCGTAAAATTCCGA
GAATTTTCCCAGGTTGTTGGGGTTAGGGTTAGGGATACTCATGTATAGTG
TTTACAGTCAAGTGTACTTCAACAATCTTGTCGAAGATGCGTGAAAAGGT
CTACACAAGACCTCTCCTCGTCCCCCTCCTTCTCTTGCTCATCCTCACCC
TCACCCCGCCCCCCTCCCCCTGGTCCTCCTCTTCCTTTTGCTGCCGCTTG
CTGTAGATGTACGTGGACGGTTACACCCCTAACTTCTACTGGCGCTACAG
CTTACCCTACGGCCCGTCGTGCTCGGACATCGTGTCCTGGATACGCGAAA
ACCCGGGCCTCCTCGGCAAGATGCAGCCGCCGGTGTCCAGCGCTCCCCCC
TTGCCCGCTGCCGTGGCATGCTTGTGCATGATGCCCATGACGAAAGATGG
GAGGGAATTCCTACCGAAACGCCTCCAGCCGCTCGTTGAGCCAGGGTCTC
CACTTCGGGAGGCGTTAGAGTGGACAGGGGTAAAGGCGGGGCTCGACATC
CCAAAAATCTTACGCGTCATGCAGCAGGAAGCCCCGCTCGAGCTCGTCAA
GTTTTACGATGGCACTCACAACAGGTTAGAAGAGTCGTGTGGGTACTGTA
TCGACCGTACGGTTCAGCCTGGTTTATTCGTGTGCCCGCTCGGGGCTCAT
GGCGCGTTGCCAGAGCGGAGATCTGCTGCGTGCTCGCGGGGTGCTGATGT
GCGTGAAAAGCGACGTGATATCGTTTGCGCTGTGAGACCAAAAAACAAAA
CGGGGACGCGGCGTTTTCTTGCAGCGGGTAGAGGCTTTTGTGGAAAGATG
CTGCGTTGCAGCTGAGATCGCTGCAAGAATTGCTGATTTTCTCGAAAGGG
GTTTTTACTCTCATCTTCACGATAGCCTTCGTAGTGTCCCGTGTCTCGAG
CCTCTCGTAAGGCAAGGCGAGATGCTTGTCAGCTTTGCGTTTATATCAGA
CGCATACTAGCAGTACCGTAGTACTTTGATCACTCGTGTTGCGTGCATGA
CCGAAAACATAACGTATTTCTTGTCCAGGACGAAAGAGTTGTTGCGGCGA
CACTTTTTCAGTACCGTTCGCTCTACGTCCTTGACCCGTCTCCTCCTCCT
CCTCCTCCTCCTCCCCTTGCACACCTTCTGTCCGTTCGAAACGACGCACA
CCTAGATTTGTTGCTGCACCTCTTTTTCAGTATCGCCCTCTTTATGCCCT
TGACCCGTCTCCTCCTTCTACTGCTCATTCCCAACCTCCCTCCCTCCGTC
CGACATTTCGCGCCTGTCGTCCACGGCGCTCGGCCCTGCCCTGTTCTGCC
CTGCTCGGGTCCGCAGCCACGCATGGAAGGTGGTCTACTTGGACTCGACC
TTTCCTCCGCGCAAAACCCTGCCTCCTCGATCGCCGACCAAGGACTTCGC
TTCGCTGGAGGAGACCAACCACATCACCAAACTTCAGCGCATTCAGGCCA
CTTCCATGGCAGCCACGTCCGCCCCTCGCTGTCTACCCTGGAGCAGTCCT
GGCGACCCCACCACGTGGCAGCAACCACAAGGGGTTCAAGGTCAACCCTA
CAAGAAGGCGTTTTATCGCAGGGAAAGCGGGAGCGGCGCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8537:4753..11744-

>mRNA_M-pyrifera_M_contig8537.19900.1 ID=mRNA_M-pyrifera_M_contig8537.19900.1|Name=mRNA_M-pyrifera_M_contig8537.19900.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2478bp|location=Sequence derived from alignment at M-pyrifera_M_contig8537:4753..11744- (Macrocystis pyrifera P11B4 male)
GACAACTTTTTGATAGACGGGGAAGGGCGAACATTTTGCTGGGAGTTTTT
GTCGGACCTGCTGAAGGACATGGCGGGTGAGGGAGACGTCCAAGCCGCCA
GCAAGATGGACAGGAACAGTAGGTACCCTCCTGCAGCAGCGATGCTCAAC
CTGGACAACTTTTTGATAGACGGGGAAGGGCGAACATTTTGCTGGGAGTT
TTTGTCGGACCTGCTGAAGGACATGGCGGGTGAGGGAGACGTCCAAGCCG
CCAGCAAGATGGACAGGAACAGTAGGTACCCTCCTGCAGCAGCGATGCTC
AACCTGGCGGTGCAGCAGGGAAAGCTTGGAGAAGGCGTGGAACTACAACT
GCACAGGTTCCCCGTGCCAGAGGAGGGGGAGTCTTCGGAAGAGGATGAAA
CGACGCAGTGGAGGTCGAGCACGACCGTGAGGGGGCGTGAGTACAGCTGG
ATACACACCACGCCCAAGAAAAAGGTGGCTAAGCATGAGGCGGCCGCGAT
GCTGTTGGAGGAGCTGTTGCCAGGCGGTGCAGCAGGGAAAGCTTGGAGAA
GGCGTGGAACTACAACTGCACAGGTTCCCCGTGCCAGAGGAGGGGGAGTC
TTCGGAAGAGGATGAAACGACGCAGTGGAGGTCGAGCACGACCGTGAGGG
GGCGTGAGTACAGCTGGATACACACCACGCCCAAGAAAAAGGTGGCTAAG
CATGAGGCGGCCGCGATGCTGTTGGAGGAGCTGTTGCCAGATGTGTACCA
GAAGTATTTGGACCAGGAAACAGCTCGGCTTCTGGAAGAATCTGGCCGCA
GCGAGGATGACGAAGACATCGACCTTCTGATGTGTACCAGAAGTATTTGG
ACCAGGAAACAGCTCGGCTTCTGGAAGAATCTGGCCGCAGCGAGGATGAC
GAAGACATCGACCTTCTGGACCTTGCGGTGGACGACGAGGACTCGGAATC
TTGGCAAACTGACGACGAGAACGACCGCAGCACGGGATGGACAAAAAAGG
AGAGGTCTCTTTTCGACGTGGAGGACTATCTCTCGGGCATCCTCTGGAAC
TTGCAGGACCTTGCGGTGGACGACGAGGACTCGGAATCTTGGCAAACTGA
CGACGAGAACGACCGCAGCACGGGATGGACAAAAAAGGAGAGGTCTCTTT
TCGACGTGGAGGACTATCTCTCGGGCATCCTCTGGAACTTGCAGATGTAC
GTGGACGGTTACACCCCTAACTTCTACTGGCGCTACAGCTTACCCTACGG
CCCGTCGTGCTCGGACATCGTGTCCTGGATACGCGAAAACCCGGGCCTCC
TCGGCAAGATGCAGCCGCCGGTGTCCAGCGCTCCCCCCTTGCCCGCTGCC
GTGGCATGCTTGTGCATGATGCCCATGACGAAAGATGGGAGGGAATTCCT
ACCGAAACGCCTCCAGCCGCTCGTTGAGCCAGGGTCTCCACTTCGGGAGG
CGTTAGAGTGGACAGGGGTAAAGGCGGGGCTCGACATCCCAAAAATCTTA
CGCGTCATGCAGCAGGAAGCCCCGCTCGAGCTCGTCAAGTTTTACGATGG
CACTCACAACAGATGTACGTGGACGGTTACACCCCTAACTTCTACTGGCG
CTACAGCTTACCCTACGGCCCGTCGTGCTCGGACATCGTGTCCTGGATAC
GCGAAAACCCGGGCCTCCTCGGCAAGATGCAGCCGCCGGTGTCCAGCGCT
CCCCCCTTGCCCGCTGCCGTGGCATGCTTGTGCATGATGCCCATGACGAA
AGATGGGAGGGAATTCCTACCGAAACGCCTCCAGCCGCTCGTTGAGCCAG
GGTCTCCACTTCGGGAGGCGTTAGAGTGGACAGGGGTAAAGGCGGGGCTC
GACATCCCAAAAATCTTACGCGTCATGCAGCAGGAAGCCCCGCTCGAGCT
CGTCAAGTTTTACGATGGCACTCACAACAGCCACGCATGGAAGGTGGTCT
ACTTGGACTCGACCTTTCCTCCGCGCAAAACCCTGCCTCCTCGATCGCCG
ACCAAGGACTTCGCTTCGCTGGAGGAGACCAACCACATCACCAAACTTCA
GCGCATTCAGGCCACTTCCATGGCAGCCACGTCCGCCCCTCGCTGTCTAC
CCTGGAGCAGTCCTGGCGACCCCACCACGTGGCAGCAACCACAAGGGGTT
CAAGGTCAACCCTACAAGAAGGCGTTTTATCGCAGGGAAAGCGGGAGCGG
CGCGCCACGCATGGAAGGTGGTCTACTTGGACTCGACCTTTCCTCCGCGC
AAAACCCTGCCTCCTCGATCGCCGACCAAGGACTTCGCTTCGCTGGAGGA
GACCAACCACATCACCAAACTTCAGCGCATTCAGGCCACTTCCATGGCAG
CCACGTCCGCCCCTCGCTGTCTACCCTGGAGCAGTCCTGGCGACCCCACC
ACGTGGCAGCAACCACAAGGGGTTCAAGGTCAACCCTACAAGAAGGCGTT
TTATCGCAGGGAAAGCGGGAGCGGCGCG
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