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Homology
BLAST of mRNA_M-pyrifera_M_contig8534.19891.1 vs. uniprot
Match: D7G015_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G015_ECTSI) HSP 1 Score: 191 bits (485), Expect = 2.160e-57 Identity = 99/154 (64.29%), Postives = 114/154 (74.03%), Query Frame = 2
Query: 293 GEVSPGYSDVTVREAVEWTMSRDSEFTYIDIRSAEEHGKLATVRGALCIPAFERATPRAPPXXXXXXXXXXXXXXXXXXXXYEADYDYEELEWKILPDFVERLKEQFDLSAKLLIGCKTKRSAEACRLLVDAGFTEIYNVESQIFMRTRAPQVW 754
GE GY+DVTVREAVEWTMSRDSEF+YIDIRSAEEH KLATVRGALCIPAF+ P A Y Y++EE ++ + PDFV+ +K +FDL AKLLIGCKT RSA+AC+LLV+AGFTEIYNVESQIFMRTRAP+VW
Sbjct: 65 GEEEKGYTDVTVREAVEWTMSRDSEFSYIDIRSAEEHEKLATVRGALCIPAFDLVMPEA------EEQGEGLDDQDGDDTGYAPAYNFEESDYTVKPDFVDTMKARFDLDAKLLIGCKTYRSAKACQLLVEAGFTEIYNVESQIFMRTRAPEVW 212
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | chloroplast |
Ec32 ortholog description | Rhodanese-like domain |
Ec32 ortholog | Ec-22_003290.1 |
Exons | 4 |
Model size | 777 |
Cds size | 735 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816762.0246031-UTR-M-pyrifera_M_contig8534:1934..1951 | 1622816762.0246031-UTR-M-pyrifera_M_contig8534:1934..1951 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig8534 1935..1951 - |
1692278163.241652-UTR-M-pyrifera_M_contig8534:1934..1951 | 1692278163.241652-UTR-M-pyrifera_M_contig8534:1934..1951 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig8534 1935..1951 - |
1622816762.0953774-UTR-M-pyrifera_M_contig8534:8166..8191 | 1622816762.0953774-UTR-M-pyrifera_M_contig8534:8166..8191 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig8534 8167..8191 - |
1692278163.2999563-UTR-M-pyrifera_M_contig8534:8166..8191 | 1692278163.2999563-UTR-M-pyrifera_M_contig8534:8166..8191 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig8534 8167..8191 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816762.038871-CDS-M-pyrifera_M_contig8534:1951..2113 | 1622816762.038871-CDS-M-pyrifera_M_contig8534:1951..2113 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8534 1952..2113 - |
1692278163.2536962-CDS-M-pyrifera_M_contig8534:1951..2113 | 1692278163.2536962-CDS-M-pyrifera_M_contig8534:1951..2113 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8534 1952..2113 - |
1622816762.0530305-CDS-M-pyrifera_M_contig8534:3899..4074 | 1622816762.0530305-CDS-M-pyrifera_M_contig8534:3899..4074 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8534 3900..4074 - |
1692278163.2702343-CDS-M-pyrifera_M_contig8534:3899..4074 | 1692278163.2702343-CDS-M-pyrifera_M_contig8534:3899..4074 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8534 3900..4074 - |
1622816762.0698044-CDS-M-pyrifera_M_contig8534:6236..6440 | 1622816762.0698044-CDS-M-pyrifera_M_contig8534:6236..6440 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8534 6237..6440 - |
1692278163.2806058-CDS-M-pyrifera_M_contig8534:6236..6440 | 1692278163.2806058-CDS-M-pyrifera_M_contig8534:6236..6440 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8534 6237..6440 - |
1622816762.0843163-CDS-M-pyrifera_M_contig8534:7972..8166 | 1622816762.0843163-CDS-M-pyrifera_M_contig8534:7972..8166 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8534 7973..8166 - |
1692278163.2907164-CDS-M-pyrifera_M_contig8534:7972..8166 | 1692278163.2907164-CDS-M-pyrifera_M_contig8534:7972..8166 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8534 7973..8166 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig8534.19891.1 >prot_M-pyrifera_M_contig8534.19891.1 ID=prot_M-pyrifera_M_contig8534.19891.1|Name=mRNA_M-pyrifera_M_contig8534.19891.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=245bp
MRVGGFVLLLGAMAEAFVPRPSRILQRSWLLEATGKHNNLKPFSRPISSL RPAVSGRRGWVGSFRAPRMWEGDGEAQGLEEEEGEYEKEGEVSPGYSDVT VREAVEWTMSRDSEFTYIDIRSAEEHGKLATVRGALCIPAFERATPRAPP PPGPEGTGDGSDVDSEPMPVYEADYDYEELEWKILPDFVERLKEQFDLSA KLLIGCKTKRSAEACRLLVDAGFTEIYNVESQIFMRTRAPQVWE* back to topmRNA from alignment at M-pyrifera_M_contig8534:1935..8191- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig8534.19891.1 ID=mRNA_M-pyrifera_M_contig8534.19891.1|Name=mRNA_M-pyrifera_M_contig8534.19891.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6257bp|location=Sequence derived from alignment at M-pyrifera_M_contig8534:1935..8191- (Macrocystis pyrifera P11B4 male) CCCCTCTGTGGTTGCACAAGACGCCATGCGAGTGGGAGGCTTTGTACTGC
TGCTGGGAGCTATGGCAGAGGCCTTCGTGCCGAGGCCTTCCAGAATCCTG
CAACGCTCGTGGTTGCTTGAGGCGACGGGCAAGCACAACAACCTCAAGCC
CTTTTCGCGACCCATCTCTTCCCTTCGCCCTGCCGTCTCTGGACGAAGGG
GATGGGTTGGCTCGTTCCGGTGAGGTCTTGCTATGGGGCTCATGTGCTGT
GAGATAGCACGACAACAGTATGCGAAGTATGCGGCACGACCTGTCCGGCG
TGGAAGACGCCAGGGTAAGGGGGGGTTGTAGTACACACAGACACGAGGTC
TAGGGTGTGTATATCTGTGATGCTATGGGTTGCTGTTTTATCATGTGTAT
TGCAAGGCACACGCACGAGGCATGAACTATGCAGTCGCACTGCTGCTGCT
GTAGAATACACCCTCCACGCCTCGGTTGAGCCTCCACGACAAGCAACAAC
TGCGGTCTCGCTGCGCCGCCACATGACACACACGAGTACGAATTCTAGCT
CTCATCGTAAAGGCACATAGGATGATACGTTTGGTGCACGCAGGTGGTTT
TGAAAGCACTCAACTCGCTGGCCTCCCCTATATATACGATAGCACGGTGC
CGCCTCCAAAATAAACCAAAGAATGACGAAATCGGAAGACCGCGAGAATG
CGCCGCTTGCGTCTCCGCGGCACCCACGTTTCGAGTTGGAATGGCGGTAT
ATACAGCAGTGCTACTGTAGTTGCTACCGCTGTAGTACTCGTGGACTCAA
AGGTGCTCCTTCAGGGAACGTGAGCACCGGTACGAGGTCGCCTCACGACG
ATTTGCGCAAGTACGAGTATACAGCAGTAGTATTGTTGGGTAACTCAAGA
GATGCGCGGAAACGGTATCCGCGTACGAGTACGCAATGCTTTTCCGGACA
GTCCTACCGCATTTTCAGGCAGCCGAGTAACAAGAACACACTCCGCACTG
GTATATTATCGGTATACCGGGACACTGGCTATATATTGGGTTGCAGCACT
CAAATGTCCAACCATGACTCGAGTCCGTGGGCACTCCTCTACTGCAGCGA
GTCAATGGCCACGCATTGCAACGGACGGGAAACAGGACGGTGGCCAATGG
GTAGCATCGGCGTCCCGACCGCGAGGTATCTACCGGGCTGGTAAGCGTGG
GCAACACGAGACCTACTTCACTTACCATCGCTGTTTTATCAACCACGGCT
GCTTCACTTACCACTGCTGATGGAGAGCGTCGCTTCCGCGGAGCCCGCCG
TCAACGGTGCCTGCGGCCGGTTCTCACGGGTGGCGGGTAGGTTGGCGTTG
GTCTCCTCTTCCCGGAGGAGCAAAGCTAGCTCGCCCGGGATACACATCGG
GTTCCGTATTTCTTAATTTTTTTCTGCAGCTGCCAGCCGGTCTTTCATGC
AGTACGTATGTATATACAAAGTATATACCTGGTACTGCCTGTACTTGGTT
ATCGTTCTCTTTGTCCTGTGTTGATATGACTGCTGTTACTGCGCATCCCA
CTCGCAGAAAGGGGAGGCTGCCGTCGACGCTAAATTTAGGGTAAAAAGTC
GATTGACTACCCAGCCCAGGGTAAGGGTAAGCCTCAAAGCACATGCGTGC
GCACCATCCGACGCCCCCTGCCTGCACCCTCGCTGCCTCACACCGCGTTG
CCTCCTTGCTGACCGCTCCTGCCGTGCCACGTCTCCTTTGCCACGCCGAA
GTGCTCCGCGAATGTGGGAGGGAGATGGCGAAGCCCAAGGCTTAGAGGAG
GAGGAAGGTGAGTATGAAAAGGAAGGCGAAGTATCGCCTGGGTACTCGGA
CGTAACGGTGCGGGAGGCGGTGGAGTGGACCATGAGCAGAGACTCGGAGT
TTACGTACATCGACATTCGTTCCGCCGAAGAGCACGGAAAACTCGCCACG
GTCAGGTGCGTGAATACTAACTGCTGTATATACCAGAAATCGTGTTCATG
CCTCTATACTCAAGTATTAACACTACTGCTGTACTACTGTATTCATGCAG
CAGTTTAGTATGTACAACAGCAGTTTAGGACGTGCATGTGTTAGGAATTT
CGGAGTCAAGAGAATTCCAGGTTGAGTTTTTGTTAATGGTAATAATTGAC
AGCCTAGCGTTTGTGCCGAGCGTGGAACGCCAATCTAAGTATTATATAAT
ACCAGTAGCCAGTAAGAGTCTAAGCTCGACGTTGACAGCACAATAAGCGG
CAAGCCTTAGCCAACACAGGAGATTCTTATCTGCCGTCGCGTACGAGTAC
TGAACTGCTATTTTTGCAAACCAGCCATGCATAGGCAGCGGGTTGTCGTT
CGATGCTTCCTCGGAGGTGATTGTGGGGGCGTACTCATTTGTTGCTTACC
GTGATCATTTGATGATGGACCAAGCATCCCTTTCGAGACGGAGCACCGTT
CCTACTCCTAATAGAGAGACCTCCAACATTGGGGCGCTCATGACGTTGTT
TCCATAGAAAAAAAAAAAAAATCTTACTGTTTGGCCGCCTGTGGCCACCA
TCTATCTCCTAGGATAGCGATCGTTTTATCGCCAGTATCTGGTGTACCAA
ACTCCTCCCATGTCACCTTCGTCTATTTTCCTCATCTCCTCTTCCAACAC
ATCTCATTCCTCCTTGTACGTTTCACATTCTCCTACTATGTGAATTCTAC
TCTATTTTGCCTTGCCACACGGGCACATCTGTGCATCTACTTCCTTCTCC
CGGCTTCTGGTATATACCTATTTCTTCTTTCTGGCATGTCCAGGTCACCT
ACACGAAATCGCAGTTTCAACGTTGATAGGGGAGGGGAGTCTTGGTCCTT
TTTTGCTGGAAGGGGTAGAGCCAGGGGAAGAGGGAGGAGCACGTAGTGTT
TGGTTGTTGGAAGTATCGTTACTTACAGCAGGTCTGGCTTTCTCTGCTGC
TTCTGCGTGTTTTTCGTTTTTGTTTCTGACACTCGCGCCGAACATTGTTG
GATGATGAACAAATTGGTGGTATTTTCGAAGGCGTTGTCTTCACATTGAG
CCGCTATTTCTACCCACCCACGTCAGTACACCTACTGAGTGTCCGTCCTC
TTTCTTCATCCTAATAAAAATAGAGAGATACTTATTATGTGGTTGCATAG
TGTGAGACAAAGAAAACCAATCATGTTGCATTTGGAGCAAGACAAATTAA
TCTAATCCGAACGTGCTGGGTACGAGAACACAACAAATAAGCCAACCAAG
AAAAGACCAACTACAGCAGTACGTACAAGACATCAACTAATTTCCACCGC
GCCTAGAATAGGGACGATCCCCTTTCGAGCTGGCTGTTTGTTTTTTTTTC
TACGCCCTACGGCCGAGGCTCCACAACCGCTCATGTACGGCGGTTATTCT
AGAATATTCTCTAAATTCACCAAATCAACCAACGCGCGCATGTTAACGTC
AGTTACACACTACTACCCTGCCGCGCGAGTTCCTAGCAGCGACAGCCACG
TATAGTATTAATATTACTATTTATTATTATACTTTGCACCAGTGCACGAG
TGGCAGTACGAATAGTTGTCGCTCCGTAGTCAAGCAGAACTCGTACTGCT
GTAGTACTTGCGTTGATAGTAGTGGTATCGTAGTCAACAGGAATGTTCGT
ATCAGGATGCCGTACTTCGAGGGTGTTGTACTTGTGAGGTACTCGGTAAT
TTTAGTGTCCTGGATATTACGCACCACTGCGAGGCACTAGGGCGTACCCA
GTAGTTTTGAGGATACCGCACATCGTGGTACTGGGGGCCCTCTCAAGTGC
TGGTACTGGCGAGATACTGGTAGTACTGGCAGTATACCTGATACTTTTAA
TAGCGGCTGCGTCGGTTATTGACGAATATTATCTGCTATTTACTATTGCT
AAAAAAAGTGTCGTCTTTCCAGTTTGCATACCGACTGCTACTGCTTTAGA
ACTGACCTCACTCCAAGCACAAGGCGTTTCTTCAATCTTACATAGCAAAC
ACAATCACGTAAGGCAGCGTTCATCATCCTCCTCCTCCTCCGCGCCCTCC
TCTTCGTCGCGTGCCGCGATCGCTATAACTAACTCCAACCACGGGTGCTT
GCCGCCGGCCTTTGTAGGGGAGCGCTATGCATCCCCGCTTTCGAGCGCGC
AACGCCGAGGGCCCCGCCTCCGCCGGGCCCGGAGGGGACAGGGGACGGAA
GCGACGTCGACTCGGAGCCCATGCCTGTGTACGAAGCGGACTACGACTAT
GAAGAATTGGAGTGGAAAATTCTGCCGGACTTCGTTGAACGGGTGAGGCA
ATCGAGACAGCCATATACATGTTCGGCCGTGGTCACGACTTGGCTGAGCT
TCGACCATTTGTTTGAACTTTAAATCGACTGTACATGCTGTATCTCCAGC
ACCAACCCTATCCCCGACCGCCTGTACATTTTTCGCTGAATGTAGTGGTA
ACGAAGAGTTGGTATGCACGCACTATCGCCCGGTGGATAAAAAATGCTGA
ACGAAAATCTGTCGTGAGGTATTTGTGTGCACTCTCAGCCATTTTTCCAG
GTGGGAAAGTTGCTGGAATGAGAGTGGAACGATAAATTTGTGCGTACTAT
CTGTTTTATCAACAGTCTTGCCCAGTGGGAACTTCTATGACTGGAGCTGT
AGTGAGGAACGAGTGTGCACTATCAACCTTTCTTCCGTGTGGGAAAGTTT
CTCGGAATTAAGCTGGAACGAGCTATTTGTGTGCGCTACCAACAGTTTTG
GCCGGTGGGAAATTTCGCTGAAAGCAGCTGTAATGAGGAGTTTGTAACCA
CGATCAACCATTTTGTCGAAGTTATTGACCCGACCGCCCTGGAAAGCTAT
CGGAAAGGAAGCTGCGACGATTAAGTTGTGTTGCGCCAAGCCGTAAACTC
AATAACTGGTTTCGTTGGCGCATAGGATGCCTCAAAAATATCAAAACTCA
CACGGGGGCGTCGTTGTCGCCCACACCTCTGTTTGTATGTTCTTGCAGCA
GCAGCAAACTTTGCCACTTTTGTCAAGTGTTTGTGCTGTCTAACTCTTCA
GCCATTAAATATGTCTGCCGTCGTTTCATACGGTATGCCACTTTGTCTGT
TAAGTCGTCGGTTGCTCGTGAGCATGTGCGGTATGTTCACTTTTGCCAAT
TGACGTTTATTTGTACGTTGGTCAGGTATCAGGCATCTGCTCTTCGTTAC
TTCGTCACTTAAAATGCAACTTTGTCGCTTCGGTGTGCTTCGTCAAATTC
GGCATGTGTCTTGTACTGTGTCACTTCGTCCGTTAAAATGTCAACTCGTC
GCAGTGTGCTTTGTTTTTTCTAGCATGCACTTTGTACTGTCACTCTGTCG
GTTAAAATGTCAACGTGTCAGTTGTATTTGCTTCGGCAGGTGTTTCGTAA
GTGAACCGGCACCTTGTCAGTTCTTTGCGATTCATCAGTAACAATGCGCT
TGATCTGCCAAACGCGTTCGTTACCACCGCTTGCTACTCAAAACCCCACG
CTGAAGCTTCAACTCCTCCAACGCATCTACCCGGCCATTAGTAGCATGGA
CGATCTATCCACCCACGAACGGCAGGAATCATCATTCGCACGACCCATCC
ATATCCATGAGCCGTGTAATACCTGGTATTACTATTAATACGAGGCCATA
CTACTGCTCTATGTGATACCAGTGTGATACCACGACAGATTTCTCCAGGA
GGCGTGTGTAGATTCAACTGAAGCATAGCCCCCCATCCCATTGGCAACAC
TAGCGTAACACTACTGCTGTAATTCATAGCTGTTAACCCCGCTGTACACC
CCTACTTGCGCCGCGGTTGCCCCCTTCAATTATCTGATGTATACCCACCG
CGAGCATATACGTATTACGAGCACGTCAGCTGTGAGTGCAACCAAAAAAC
GATTGAGCAACTCAAGCTCTGCATTTCCAACCTCGCGTTTCCCCTTCTTG
GTCGCTGCCTTCCGATACCATCCCCGCCGTTGTCGTTTTGTTTTCGTTGT
CTCCCGAATGCCTCTTGTCTGCTGCGACGATGGCTGCCTGGTATTGCTCT
CGACTCTCGGCATGCTCGACTCACACAGCTGAAGGAACAGTTCGACCTCA
GCGCTAAGCTTTTGATAGGGTGCAAGACCAAGAGATCCGCGGAGGCGTGT
CGACTACTGGTCGATGCAGGGTTCACGGAAATCTATAACGTAGAGAGTCA
GATATTTATGAGGACGAGAGCCCCTCAAGTGTGGGAATGATATCATATAT
TTATATA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig8534:1935..8191- >mRNA_M-pyrifera_M_contig8534.19891.1 ID=mRNA_M-pyrifera_M_contig8534.19891.1|Name=mRNA_M-pyrifera_M_contig8534.19891.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1470bp|location=Sequence derived from alignment at M-pyrifera_M_contig8534:1935..8191- (Macrocystis pyrifera P11B4 male) ATGCGAGTGGGAGGCTTTGTACTGCTGCTGGGAGCTATGGCAGAGGCCTT CGTGCCGAGGCCTTCCAGAATCCTGCAACGCTCGTGGTTGCTTGAGGCGA CGGGCAAGCACAACAACCTCAAGCCCTTTTCGCGACCCATCTCTTCCCTT CGCCCTGCCGTCTCTGGACGAAGGGGATGGGTTGGCTCGTTCCGATGCGA GTGGGAGGCTTTGTACTGCTGCTGGGAGCTATGGCAGAGGCCTTCGTGCC GAGGCCTTCCAGAATCCTGCAACGCTCGTGGTTGCTTGAGGCGACGGGCA AGCACAACAACCTCAAGCCCTTTTCGCGACCCATCTCTTCCCTTCGCCCT GCCGTCTCTGGACGAAGGGGATGGGTTGGCTCGTTCCGTGCTCCGCGAAT GTGGGAGGGAGATGGCGAAGCCCAAGGCTTAGAGGAGGAGGAAGGTGAGT ATGAAAAGGAAGGCGAAGTATCGCCTGGGTACTCGGACGTAACGGTGCGG GAGGCGGTGGAGTGGACCATGAGCAGAGACTCGGAGTTTACGTACATCGA CATTCGTTCCGCCGAAGAGCACGGAAAACTCGCCACGGTCAGTGCTCCGC GAATGTGGGAGGGAGATGGCGAAGCCCAAGGCTTAGAGGAGGAGGAAGGT GAGTATGAAAAGGAAGGCGAAGTATCGCCTGGGTACTCGGACGTAACGGT GCGGGAGGCGGTGGAGTGGACCATGAGCAGAGACTCGGAGTTTACGTACA TCGACATTCGTTCCGCCGAAGAGCACGGAAAACTCGCCACGGTCAGGGGA GCGCTATGCATCCCCGCTTTCGAGCGCGCAACGCCGAGGGCCCCGCCTCC GCCGGGCCCGGAGGGGACAGGGGACGGAAGCGACGTCGACTCGGAGCCCA TGCCTGTGTACGAAGCGGACTACGACTATGAAGAATTGGAGTGGAAAATT CTGCCGGACTTCGTTGAACGGGGGAGCGCTATGCATCCCCGCTTTCGAGC GCGCAACGCCGAGGGCCCCGCCTCCGCCGGGCCCGGAGGGGACAGGGGAC GGAAGCGACGTCGACTCGGAGCCCATGCCTGTGTACGAAGCGGACTACGA CTATGAAGAATTGGAGTGGAAAATTCTGCCGGACTTCGTTGAACGGCTGA AGGAACAGTTCGACCTCAGCGCTAAGCTTTTGATAGGGTGCAAGACCAAG AGATCCGCGGAGGCGTGTCGACTACTGGTCGATGCAGGGTTCACGGAAAT CTATAACGTAGAGAGTCAGATATTTATGAGGACGAGAGCCCCTCAAGTGT GGGAATGACTGAAGGAACAGTTCGACCTCAGCGCTAAGCTTTTGATAGGG TGCAAGACCAAGAGATCCGCGGAGGCGTGTCGACTACTGGTCGATGCAGG GTTCACGGAAATCTATAACGTAGAGAGTCAGATATTTATGAGGACGAGAG CCCCTCAAGTGTGGGAATGA back to top
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