mRNA_M-pyrifera_M_contig85313.19889.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85313.19889.1
Unique NamemRNA_M-pyrifera_M_contig85313.19889.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85313.19889.1 vs. uniprot
Match: A0A5A8EH01_CAFRO (Protein kinase domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EH01_CAFRO)

HSP 1 Score: 82.4 bits (202), Expect = 1.760e-16
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    4 VKPRS-KPMTSRDPKVYTDLRQVLGIHKGGPHGL--DKKEG-SEQRYIFLLDLIERMTEWDPAIREKPLQALSHPFFRDELD 237
            +KPRS +P  S++  V +DLR+ LG+H  GP G   D++ G +E+ Y   LDLIERM EWDP  R +P+QAL+HPF R++++
Sbjct:  473 LKPRSERPGASQEQAVVSDLREALGVHTFGPKGRRRDERTGHTERHYELFLDLIERMLEWDPRKRVRPMQALNHPFLREDVE 554
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85313.19889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8EH01_CAFRO1.760e-1648.78Protein kinase domain-containing protein n=4 Tax=C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85313contigM-pyrifera_M_contig85313:554..808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.9418972-CDS-M-pyrifera_M_contig85313:553..7841622816761.9418972-CDS-M-pyrifera_M_contig85313:553..784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85313 554..784 -
1692278163.2076218-CDS-M-pyrifera_M_contig85313:553..7841692278163.2076218-CDS-M-pyrifera_M_contig85313:553..784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85313 554..784 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.9526095-UTR-M-pyrifera_M_contig85313:784..8081622816761.9526095-UTR-M-pyrifera_M_contig85313:784..808Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85313 785..808 -
1692278163.218795-UTR-M-pyrifera_M_contig85313:784..8081692278163.218795-UTR-M-pyrifera_M_contig85313:784..808Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85313 785..808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85313.19889.1prot_M-pyrifera_M_contig85313.19889.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85313 554..784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85313.19889.1

>prot_M-pyrifera_M_contig85313.19889.1 ID=prot_M-pyrifera_M_contig85313.19889.1|Name=mRNA_M-pyrifera_M_contig85313.19889.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MTSRDPKVYTDLRQVLGIHKGGPHGLDKKEGSEQRYIFLLDLIERMTEWD
PAIREKPLQALSHPFFRDELDRKRSAE
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mRNA from alignment at M-pyrifera_M_contig85313:554..808-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85313.19889.1 ID=mRNA_M-pyrifera_M_contig85313.19889.1|Name=mRNA_M-pyrifera_M_contig85313.19889.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig85313:554..808- (Macrocystis pyrifera P11B4 male)
CACGTCAAGCCTCGTTCGAAACCAATGACGTCTCGCGATCCAAAAGTGTA
CACGGATTTGCGTCAAGTGTTGGGCATTCACAAGGGAGGGCCTCATGGGT
TGGACAAGAAGGAAGGATCAGAGCAACGATACATCTTCCTGCTTGACCTC
ATCGAGAGAATGACCGAATGGGATCCAGCCATTCGAGAAAAGCCGCTCCA
AGCACTCTCCCACCCTTTCTTCCGAGACGAACTCGACAGGAAGAGGTCGG
CAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85313:554..808-

>mRNA_M-pyrifera_M_contig85313.19889.1 ID=mRNA_M-pyrifera_M_contig85313.19889.1|Name=mRNA_M-pyrifera_M_contig85313.19889.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig85313:554..808- (Macrocystis pyrifera P11B4 male)
ATGACGTCTCGCGATCCAAAAGTGTACACGGATTTGCGTCAAGTGTTGGG
CATTCACAAGGGAGGGCCTCATGGGTTGGACAAGAAGGAAGGATCAGAGC
AACGATACATCTTCCTGCTTGACCTCATCGAGAGAATGACCGAATGGGAT
CCAGCCATTCGAGAAAAGCCGCTCCAAGCACTCTCCCACCCTTTCTTCCG
AGACGAACTCGACAGGAAGAGGTCGGCAGAGATGACGTCTCGCGATCCAA
AAGTGTACACGGATTTGCGTCAAGTGTTGGGCATTCACAAGGGAGGGCCT
CATGGGTTGGACAAGAAGGAAGGATCAGAGCAACGATACATCTTCCTGCT
TGACCTCATCGAGAGAATGACCGAATGGGATCCAGCCATTCGAGAAAAGC
CGCTCCAAGCACTCTCCCACCCTTTCTTCCGAGACGAACTCGACAGGAAG
AGGTCGGCAGAG
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