mRNA_M-pyrifera_M_contig85301.19885.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85301.19885.1
Unique NamemRNA_M-pyrifera_M_contig85301.19885.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85301.19885.1 vs. uniprot
Match: A0A1B9IUC9_9TREE (Importin subunit beta-1 n=5 Tax=Kwoniella TaxID=490731 RepID=A0A1B9IUC9_9TREE)

HSP 1 Score: 79.3 bits (194), Expect = 1.430e-14
Identity = 38/132 (28.79%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   13 SDFAMALGEEFRVLENDCIPLILDTLSAPDVRHDLKPSCISTLGDIAFALGGTGFHEHVGEVCSVLGEAAKMCSAEPSDHEVEIFQSLREALISAYQSILEAFNDEEAVRFAVKINPYVAGIVDFVQSLWLE 408
            SD A A+ E         +  ++D L +P V+  +KP+ I+T+G++A A+GG GF  ++    ++L +A    +A   +  ++  Q++RE+++ A+  I+    D +A      + PYV+GI+ F+++ WL+
Sbjct:  672 SDIARAINEALTPYAERLMVALIDLLRSPVVQRQVKPNAITTIGEVALAIGG-GFRPYLDTTMTILSQAGSTSAAPGDEAMIDFVQTMRESIVDAFIGIMNGIKDSDASA----MQPYVSGIMGFLKTCWLD 798          
BLAST of mRNA_M-pyrifera_M_contig85301.19885.1 vs. uniprot
Match: A0A5M6BQY0_9TREE (Importin N-terminal domain-containing protein n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6BQY0_9TREE)

HSP 1 Score: 75.5 bits (184), Expect = 3.160e-13
Identity = 36/134 (26.87%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    7 LCSDFAMALGEEFRVLENDCIPLILDTLSAPDVRHDLKPSCISTLGDIAFALGGTGFHEHVGEVCSVLGEAAKMCSAEPSDHEVEIFQSLREALISAYQSILEAFNDEEAVRFAVKINPYVAGIVDFVQSLWLE 408
            + SD A A+ +         +  +++ L +P V+  +KP+ I+T+G++A A+GG GF  ++    ++L +A    +A   +  +E  Q++RE+++ A+  I+    D   V     + PYV+GI+ F+++ W +
Sbjct:  670 VASDIARAINDSLTPYAERLMVALIELLRSPVVQRQVKPNAITTIGEVALAVGG-GFRPYLDTTMTILSQAGSTAAAPGDESMIEFVQTMRESIVDAFIGIMNGLKDSGDVS---AMQPYVSGIMGFLKTCWAD 799          
BLAST of mRNA_M-pyrifera_M_contig85301.19885.1 vs. uniprot
Match: A0A1B9H9I6_9TREE (Importin subunit beta-1 n=2 Tax=Kwoniella heveanensis TaxID=89924 RepID=A0A1B9H9I6_9TREE)

HSP 1 Score: 70.5 bits (171), Expect = 1.770e-11
Identity = 33/132 (25.00%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   13 SDFAMALGEEFRVLENDCIPLILDTLSAPDVRHDLKPSCISTLGDIAFALGGTGFHEHVGEVCSVLGEAAKMCSAEPSDHEVEIFQSLREALISAYQSILEAFNDEEAVRFAVKINPYVAGIVDFVQSLWLE 408
            +D A ++ E         +  ++D L +P V+  +KP+ I+T+G++A A+GG GF  ++    ++L +A    +    +  ++  Q++RE+++ A+  I+    D +       + PYV GI+ F+++ W +
Sbjct:  672 ADIARSINENLTPYAERIMVALVDLLRSPVVQRQVKPNAITTIGEVALAIGG-GFRPYLDTTMNILSQAGSTTAPPGDEAMIDFVQTMRESIVDAFIGIMNGIRDADVSA----MQPYVPGIMGFLKTCWAD 798          
BLAST of mRNA_M-pyrifera_M_contig85301.19885.1 vs. uniprot
Match: A0A8J1YN84_9TREE (Karyopherin beta n=1 Tax=Tremellales sp. Tagirdzhanova-0007 TaxID=2778382 RepID=A0A8J1YN84_9TREE)

HSP 1 Score: 62.0 bits (149), Expect = 1.590e-8
Identity = 34/130 (26.15%), Postives = 65/130 (50.00%), Query Frame = 1
Query:   13 SDFAMALGEEFRVLENDCIPLILDTLSAPDVRHDLKPSCISTLGDIAFALGGTGFHEHVGEVCSVLGEAAKMCSAEPSDHEVEIFQSLREALISAYQSILEAFNDEEAVRFAVKINPYVAGIVDFVQSLW 402
            SD + A+ E         +  ++D L +P +   +KP+ I+T+G++A A+G +GF  ++     +L +A    ++      +E   ++REA++ A+  I+      +   F      YVAGI+ F+ S W
Sbjct:  611 SDISRAINEAISSFAERIMVGLIDILRSPVIHRQVKPNAITTIGELALAVG-SGFTPYLQTTMDILSQAGATAASANDVSMIEFVWTMREAIVDAFIGIMNGLRPTDPAPF----QHYVAGIMGFLASCW 735          
BLAST of mRNA_M-pyrifera_M_contig85301.19885.1 vs. uniprot
Match: A0A814CTT1_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814CTT1_9BILA)

HSP 1 Score: 61.6 bits (148), Expect = 2.190e-8
Identity = 40/136 (29.41%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 LGLCSDFAMALGEEFRVLENDCIPLILDTLSAPDVRHDLKPSCISTLGDIAFALGGTGFHEHVGEVCSVLGEAAKMCSAEPSDHE-VEIFQSLREALISAYQSILEAF--NDEEAVRFAVKINPYVAGIVDFVQSL 399
            +G+  D    +G +     +D + ++L+ L +P +   +KPS +ST GDIA A G T F ++   V + L +A+ +  A+P+D + ++ F  LRE  + AY  IL+    N+   +   + I P++  I++F+  L
Sbjct:  674 VGVVGDLGRNIGNKILPYCDDIMTILLEGLISPKLNKSVKPSILSTFGDIALATG-TDFKKYATVVLNALHQAS-IIHADPNDFDLIDYFNELREGCLDAYTGILQGLKGNNNTPIDLEIVI-PHMNNILEFLAIL 806          
BLAST of mRNA_M-pyrifera_M_contig85301.19885.1 vs. uniprot
Match: A0A507EDM9_9FUNG (Importin N-terminal domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EDM9_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 2.980e-8
Identity = 37/132 (28.03%), Postives = 62/132 (46.97%), Query Frame = 1
Query:    1 LGLCSDFAMALGEEFRVLENDCIPLILDTLSAPDVRHDLKPSCISTLGDIAFALGGTGFHEHVGEVCSVLGEAAKMCSAEPSDHEVEIFQSLREALISAYQSILEAFNDEEAVRFAVKINPYVAGIVDFVQS 396
            +GL  D   +LGE+     +  + +++  L  P +   +KPS +S+ GDIA A+GG  F  ++     VL +A+ M S   + ++ E    LRE +I AY  I +       V     + P +   V  V +
Sbjct:  665 VGLVGDITRSLGEKMLPYCDTLMNILMTDLQNPALNKTVKPSILSSFGDIALAIGGH-FATYMDVTVQVLQQASAMASTVMTGYDSEYGNQLREGIIEAYVGIAQGLKGANKVEMLATVAPQIFAFVQEVAT 795          
BLAST of mRNA_M-pyrifera_M_contig85301.19885.1 vs. uniprot
Match: A0A1X7UJC0_AMPQE (Importin N-terminal domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UJC0_AMPQE)

HSP 1 Score: 56.6 bits (135), Expect = 1.220e-6
Identity = 37/140 (26.43%), Postives = 68/140 (48.57%), Query Frame = 1
Query:    1 LGLCSDFAMALGEEFRVLENDCIPLILDTLSAPDVRHDLKPSCISTLGDIAFALGGTGFHEHVGEVCSVLGEAAKMCSAEPSDHEV-EIFQSLREALISAYQSILEAFNDEEAVRFAVKIN---PYVAGIVDFVQSLWLE 408
            +GL  D   +L         + + +++DTLS P V   +KP  +ST+GDIA A+G   F  +   V  +L +A++  S   SD ++ +    LRE  +  Y  I++    ++    +  I    P++  I+ F++ +  E
Sbjct:  672 IGLVGDLCRSLSVNLIPYCENIMQIMVDTLSNPTVHRSIKPPILSTIGDIALAIGSQ-FMIYCAPVLGILEQASRTQSENSSDLDMLDYLNELREGCLEGYTGIVQGLKGDKENEVSSDIQLIVPHLPWILAFIEIIGNE 810          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85301.19885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A1B9IUC9_9TREE1.430e-1428.79Importin subunit beta-1 n=5 Tax=Kwoniella TaxID=49... [more]
A0A5M6BQY0_9TREE3.160e-1326.87Importin N-terminal domain-containing protein n=1 ... [more]
A0A1B9H9I6_9TREE1.770e-1125.00Importin subunit beta-1 n=2 Tax=Kwoniella heveanen... [more]
A0A8J1YN84_9TREE1.590e-826.15Karyopherin beta n=1 Tax=Tremellales sp. Tagirdzha... [more]
A0A814CTT1_9BILA2.190e-829.41Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A507EDM9_9FUNG2.980e-828.03Importin N-terminal domain-containing protein n=1 ... [more]
A0A1X7UJC0_AMPQE1.220e-626.43Importin N-terminal domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85301contigM-pyrifera_M_contig85301:220..627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.5
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog5207.AAW43111
Preferred namekap95
KEGG koko:K14293
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000060,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005048,GO:0005085,GO:0005087,GO:0005088,GO:0005215,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005819,GO:0005856,GO:0006605,GO:0006606,GO:0006607,GO:0006610,GO:0006612,GO:0006629,GO:0006644,GO:0006650,GO:0006656,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0008104,GO:0008139,GO:0008150,GO:0008152,GO:0008536,GO:0008565,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019222,GO:0019637,GO:0019899,GO:0022607,GO:0030162,GO:0031090,GO:0031224,GO:0031267,GO:0031323,GO:0031399,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0035639,GO:0036094,GO:0042277,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0045017,GO:0045184,GO:0046470,GO:0046474,GO:0046486,GO:0046907,GO:0046931,GO:0050789,GO:0050794,GO:0051020,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051233,GO:0051234,GO:0051246,GO:0051292,GO:0051641,GO:0051649,GO:0060188,GO:0060255,GO:0061608,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0072686,GO:0080090,GO:0090150,GO:0090407,GO:0097159,GO:0097164,GO:0097367,GO:0098772,GO:0140104,GO:0140142,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903320,GO:1990023
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGs38HCJ@33154,3NX6P@4751,3V074@5204,3VDVW@5234,COG5215@1,KOG1241@2759
COG Functional cat.U
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03036
Exons1
Model size408
Cds size384
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.7525373-CDS-M-pyrifera_M_contig85301:219..6031622816761.7525373-CDS-M-pyrifera_M_contig85301:219..603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85301 220..603 -
1692278163.1038992-CDS-M-pyrifera_M_contig85301:219..6031692278163.1038992-CDS-M-pyrifera_M_contig85301:219..603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85301 220..603 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.767029-UTR-M-pyrifera_M_contig85301:603..6271622816761.767029-UTR-M-pyrifera_M_contig85301:603..627Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85301 604..627 -
1692278163.1148036-UTR-M-pyrifera_M_contig85301:603..6271692278163.1148036-UTR-M-pyrifera_M_contig85301:603..627Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85301 604..627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85301.19885.1prot_M-pyrifera_M_contig85301.19885.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85301 220..603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85301.19885.1

>prot_M-pyrifera_M_contig85301.19885.1 ID=prot_M-pyrifera_M_contig85301.19885.1|Name=mRNA_M-pyrifera_M_contig85301.19885.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
MALGEEFRVLENDCIPLILDTLSAPDVRHDLKPSCISTLGDIAFALGGTG
FHEHVGEVCSVLGEAAKMCSAEPSDHEVEIFQSLREALISAYQSILEAFN
DEEAVRFAVKINPYVAGIVDFVQSLWLE
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mRNA from alignment at M-pyrifera_M_contig85301:220..627-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85301.19885.1 ID=mRNA_M-pyrifera_M_contig85301.19885.1|Name=mRNA_M-pyrifera_M_contig85301.19885.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig85301:220..627- (Macrocystis pyrifera P11B4 male)
TTGGGATTGTGTTCCGATTTTGCAATGGCTCTTGGCGAAGAATTCCGAGT GCTGGAAAACGACTGCATCCCACTCATCCTTGACACTCTCTCAGCACCAG ATGTCCGCCACGACCTCAAACCAAGTTGCATTTCCACCCTTGGTGACATT GCCTTTGCACTTGGTGGCACTGGGTTTCATGAACATGTTGGTGAAGTCTG TTCTGTGCTTGGGGAAGCTGCAAAGATGTGTAGTGCAGAACCAAGTGATC ATGAAGTCGAAATTTTCCAATCTCTTCGTGAAGCTCTCATCTCTGCGTAT CAATCCATCTTGGAAGCATTCAATGACGAAGAAGCAGTGCGATTTGCAGT CAAAATCAATCCCTATGTTGCTGGAATTGTTGACTTTGTCCAATCCCTTT GGTTGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85301:220..627-

>mRNA_M-pyrifera_M_contig85301.19885.1 ID=mRNA_M-pyrifera_M_contig85301.19885.1|Name=mRNA_M-pyrifera_M_contig85301.19885.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig85301:220..627- (Macrocystis pyrifera P11B4 male)
ATGGCTCTTGGCGAAGAATTCCGAGTGCTGGAAAACGACTGCATCCCACT
CATCCTTGACACTCTCTCAGCACCAGATGTCCGCCACGACCTCAAACCAA
GTTGCATTTCCACCCTTGGTGACATTGCCTTTGCACTTGGTGGCACTGGG
TTTCATGAACATGTTGGTGAAGTCTGTTCTGTGCTTGGGGAAGCTGCAAA
GATGTGTAGTGCAGAACCAAGTGATCATGAAGTCGAAATTTTCCAATCTC
TTCGTGAAGCTCTCATCTCTGCGTATCAATCCATCTTGGAAGCATTCAAT
GACGAAGAAGCAGTGCGATTTGCAGTCAAAATCAATCCCTATGTTGCTGG
AATTGTTGACTTTGTCCAATCCCTTTGGTTGGAGATGGCTCTTGGCGAAG
AATTCCGAGTGCTGGAAAACGACTGCATCCCACTCATCCTTGACACTCTC
TCAGCACCAGATGTCCGCCACGACCTCAAACCAAGTTGCATTTCCACCCT
TGGTGACATTGCCTTTGCACTTGGTGGCACTGGGTTTCATGAACATGTTG
GTGAAGTCTGTTCTGTGCTTGGGGAAGCTGCAAAGATGTGTAGTGCAGAA
CCAAGTGATCATGAAGTCGAAATTTTCCAATCTCTTCGTGAAGCTCTCAT
CTCTGCGTATCAATCCATCTTGGAAGCATTCAATGACGAAGAAGCAGTGC
GATTTGCAGTCAAAATCAATCCCTATGTTGCTGGAATTGTTGACTTTGTC
CAATCCCTTTGGTTGGAG
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