mRNA_M-pyrifera_M_contig85300.19884.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85300.19884.1
Unique NamemRNA_M-pyrifera_M_contig85300.19884.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85300.19884.1 vs. uniprot
Match: A0A5A8BYA9_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8BYA9_CAFRO)

HSP 1 Score: 186 bits (473), Expect = 5.740e-53
Identity = 87/151 (57.62%), Postives = 107/151 (70.86%), Query Frame = 1
Query:    1 VLDLCKPLLDIARARVEHNGWEDIVELVEGDATDSTLIGRGLPKAGTVDVVTFSYSLTMIPDWEASLDIAYRLLKPGGHIAIGDFTITPDMSLFTRTVWPFFFSMDHVNLNLEHIPALRERFSEITCKTAYGGFPYLNFIDVPYYHFVGRK 453
            VLDLC+PLL+  R R+  N W D V  V+GDATD  L+GR LPKAGTVD++TFSYSLTMIPDW+ SLDIA  LLKPGG+IA+ DFT+T + S  TR +WPF F  DHV L  EH   L   F ++T     GGFPY+  +  P+Y+FVG+K
Sbjct:  484 VLDLCEPLLEQCRRRIAANKWGDRVVAVKGDATDEGLVGRELPKAGTVDLITFSYSLTMIPDWKKSLDIAMTLLKPGGYIAVADFTVTKEHSALTRFMWPFIFKHDHVMLRTEHTETLAAMFDQVTLHVNRGGFPYVPVLKCPWYYFVGQK 634          
BLAST of mRNA_M-pyrifera_M_contig85300.19884.1 vs. uniprot
Match: A0A517TBR9_9PLAN (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517TBR9_9PLAN)

HSP 1 Score: 152 bits (383), Expect = 3.620e-43
Identity = 79/159 (49.69%), Postives = 101/159 (63.52%), Query Frame = 1
Query:    1 VLDLCKPLLDIARARVEHNGWEDIVELVEGDATDSTLIGRGLPKAGTVDVVTFSYSLTMIPDWEASLDIAYRLLKPGGHIAIGDFTITPDMSL--------FTRTVWPFFFSMDHVNLNLEHIPALRERFSEITCKTAYGGFPYLNFIDVPYYHFVGRK 453
            +LDLC+PLL I + R+E NGW + VE V GDAT      + +P  G+VD VTFSYSLTMIPDW A++D AYRLLKPGG I I DF +    +          TRT W  FFS+D+V L+ +HIP L ++F  +  K A+G  P   F+  PYY F+GRK
Sbjct:   94 LLDLCQPLLKIGQERIERNGWTN-VEPVHGDAT------QYVPPEGSVDCVTFSYSLTMIPDWFAAVDHAYRLLKPGGVIGIADFYVARKFAAEDRRRHGWLTRTFWQTFFSIDNVFLSGDHIPYLHQKFEPVVFKEAFGSMPIAGFVKAPYYIFIGRK 245          
BLAST of mRNA_M-pyrifera_M_contig85300.19884.1 vs. uniprot
Match: A0A6T5VPN0_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VPN0_9STRA)

HSP 1 Score: 149 bits (376), Expect = 5.810e-42
Identity = 74/152 (48.68%), Postives = 97/152 (63.82%), Query Frame = 1
Query:    1 VLDLCKPLLDIARARVEHNGWEDIVELVEGDATDSTLIGRGLPKAGTVDVVTFSYSLTMIPDWEASLDIAYRLLKPGGHIAIGDFTITPDMSLFTRTVWPFFFSMDHVNLNLEHIPALRERFSEITCKTAYGGFPYL-NFIDVPYYHFVGRK 453
            VLDLC  L+D+A  RV   GW + V++V GDA D      GLP  GTVDVV+FSY+LTMIPDW+ ++  A+R+LKPGGHIA+ DFT+T   S      W + F+ DHV+L  EHI  L   F     +  +G FPY+ + +  PYY FVG+K
Sbjct:  105 VLDLCPSLVDVATKRVNSKGWSNFVDVVLGDACDFEC--PGLPATGTVDVVSFSYALTMIPDWKKAIKNAFRMLKPGGHIAVCDFTVTESQSYGMSAFWTWLFAHDHVHLKKEHIATLGYVFETKHLEVGFGEFPYVPSLLKCPYYSFVGQK 254          
BLAST of mRNA_M-pyrifera_M_contig85300.19884.1 vs. uniprot
Match: A0A061S1T4_9CHLO (Sam-dependent methlyltransferase (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S1T4_9CHLO)

HSP 1 Score: 147 bits (372), Expect = 2.940e-41
Identity = 75/153 (49.02%), Postives = 101/153 (66.01%), Query Frame = 1
Query:    1 VLDLCKPLLDIARARVEHNGWEDIVELVEGDATDSTLIGRGLPKAGTVDVVTFSYSLTMIPDWEASLDIAYRLLKPGGHIAIGDFTITPDMSL-FTRTVWPFFFSMDHVNLNLEHIPALRERFSEITCKTAYGGFPYLN-FIDVPYYHFVGRK 453
            V+DL   L+ +A  RV+ NGWED V++++GDATD  L   GLP AGT D+VTFSY+L+MIPDW ++L  A RLLKPGG I + DFT+  +      R  W   F+ DHV+L+ EH+  LR +F E   +  YG FPY+   +  PYY+F+GRK
Sbjct:  116 VVDLTPSLVAVAEERVKRNGWEDRVKVLQGDATDPLL--PGLPAAGTADIVTFSYALSMIPDWRSALANAARLLKPGGRICVCDFTVDTERQWRVMRYFWTKLFASDHVHLSEEHLKELRSKFVEEKYEIGYGTFPYVPPLLKCPYYYFIGRK 266          
BLAST of mRNA_M-pyrifera_M_contig85300.19884.1 vs. uniprot
Match: A0A7R9T8K9_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9T8K9_9VIRI)

HSP 1 Score: 144 bits (363), Expect = 9.390e-40
Identity = 73/153 (47.71%), Postives = 100/153 (65.36%), Query Frame = 1
Query:    1 VLDLCKPLLDIARARVEHNGWEDIVELVEGDATDSTLIGRGLPKAGTVDVVTFSYSLTMIPDWEASLDIAYRLLKPGGHIAIGDFTITPDMSLFTRTVWPFFFSMDHVNLNLEHIPALRERFSEITCKTAYGGFPYL-NFIDVPYYHFVGRKE 456
            ++DL   L  IA+ RVE +GW D+V +V GDATD  L   GLP AG+VDVVT SY++TMIP+W+ ++D A RLLKPGG + + DFT+ PD +   R  +   F  DH+ L+ +HI  LR + ++      YG FPY+   I  PYY++VGRKE
Sbjct:  134 LVDLTPSLAAIAQKRVEQHGWSDLVNVVCGDATDPKL--EGLPAAGSVDVVTISYAITMIPNWQDAIDNALRLLKPGGRLCVCDFTVAPDQNPLMRAAFVKAFKGDHIYLSDKHIETLRAKTTQEQYMRDYGDFPYVPGCIRCPYYYYVGRKE 284          
BLAST of mRNA_M-pyrifera_M_contig85300.19884.1 vs. uniprot
Match: UPI0014210182 (class I SAM-dependent methyltransferase n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI0014210182)

HSP 1 Score: 138 bits (348), Expect = 9.810e-38
Identity = 73/160 (45.62%), Postives = 98/160 (61.25%), Query Frame = 1
Query:    1 VLDLCKPLLDIARARVEHNGWEDIVELVEGDATDSTLIGRGLPKAGTVDVVTFSYSLTMIPDWEASLDIAYRLLKPGGHIAIGDFTIT----PD----MSLFTRTVWPFFFSMDHVNLNLEHIPALRERFSEITCKTAYGGFPYLNFIDVPYYHFVGRKE 456
            ++DLC+PLL +A  R+    W++ VE+  GDAT  +      P  G  DVVTFSYSLTMIPDW A+L+ A RLLKPGG I + DF ++    P+        TRT WP +F+ D V L+ +H+PAL   F  I C    G  PY+ F+  PYY+F+GRK+
Sbjct:  103 LVDLCRPLLKVAEQRISDREWDN-VEVAHGDATTFS------PPDGVADVVTFSYSLTMIPDWFAALENARRLLKPGGVIGVSDFYVSRKHPPEGRRRHGWGTRTFWPTWFATDDVFLHPDHLPALHRYFEPIDCVEGRGKVPYIPFLRAPYYYFIGRKK 255          
BLAST of mRNA_M-pyrifera_M_contig85300.19884.1 vs. uniprot
Match: A0A5B8MES7_9CHLO (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MES7_9CHLO)

HSP 1 Score: 136 bits (343), Expect = 4.620e-37
Identity = 70/154 (45.45%), Postives = 95/154 (61.69%), Query Frame = 1
Query:    1 VLDLCKPLLDIARARVEHNGWEDIVELVEGDATDSTLIGRGLPKAGTVDVVTFSYSLTMIPDWEASLDIAYRLLKPGGHIAIGDFTITPDMSLF-TRTVWPFFFSMDHVNLNLEHIPALRERFSEITCKTAYGGFPYL-NFIDVPYYHFVGRKE 456
            V+DL   L  +A+ RV  N W   VE++ GDATD  L   GLP +G+ DVV+ SY++TMIP+W+  L  AYRLLKPGGHI + DFT+        ++  W + FS DH+ LN EHI  L+  F E   + +YG FPY+   +  PYY F+G K+
Sbjct:  105 VVDLTPSLAKVAKKRVADNKWGGKVEIILGDATDPKL--EGLPPSGSCDVVSISYAVTMIPNWKDVLQNAYRLLKPGGHICVCDFTLDAKSQWSASKKFWKYLFSTDHIYLNEEHITTLQTMFEEKHLEVSYGTFPYVPRLLKCPYYAFIGMKK 256          
BLAST of mRNA_M-pyrifera_M_contig85300.19884.1 vs. uniprot
Match: A0A2E0SLT7_9PLAN (SAM-dependent methyltransferase n=1 Tax=Planctomyces sp. TaxID=37635 RepID=A0A2E0SLT7_9PLAN)

HSP 1 Score: 134 bits (338), Expect = 2.120e-36
Identity = 68/159 (42.77%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 VLDLCKPLLDIARARVEHNGWEDIVELVEGDATDSTLIGRGLPKAGTVDVVTFSYSLTMIPDWEASLDIAYRLLKPGGHIAIGDFTITPDM--------SLFTRTVWPFFFSMDHVNLNLEHIPALRERFSEITCKTAYGGFPYLNFIDVPYYHFVGRK 453
            ++DLC+PLLD++R R+  NGW + VE V  DAT        +P  G VD+VTFSYSLTMIPDW ++++ A++LL+PGG + I DF ++           S F + +WP +F+ D+V LN +H+P L +RF  +      G  PY+ F+ VPYY  + RK
Sbjct:   94 LVDLCEPLLDVSRQRIRANGWSN-VEAVCADATTY------VPSEGEVDLVTFSYSLTMIPDWISAVNQAWKLLRPGGTLGIVDFYVSRKYPGEGLKRHSWFQQNIWPVWFANDNVYLNRDHLPYLLDRFELVHLAENEGSIPYVPFVKVPYYRLIARK 245          
BLAST of mRNA_M-pyrifera_M_contig85300.19884.1 vs. uniprot
Match: A0A517R4D4_9BACT (Demethylmenaquinone methyltransferase n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517R4D4_9BACT)

HSP 1 Score: 134 bits (338), Expect = 2.530e-36
Identity = 73/159 (45.91%), Postives = 96/159 (60.38%), Query Frame = 1
Query:    1 VLDLCKPLLDIARARVEHNGWEDIVELVEGDATDSTLIGRGLPKAGTVDVVTFSYSLTMIPDWEASLDIAYRLLKPGGHIAIGDFTITPDMS--------LFTRTVWPFFFSMDHVNLNLEHIPALRERFSEITCKTAYGGFPYLNFIDVPYYHFVGRK 453
            +LDLC+PLL I   RV    W++ VE V GDAT  T        AG VD+VTFSYSLTMIPDW A+++ AYRLLKPGG I I DF +    +          TR  W  FF++D+V L+ +H+P L+ RF  +  K  +G  P + F+  PYY ++GRK
Sbjct:   94 LLDLCRPLLKIGEERVAEKNWQN-VEPVHGDATAWT----PTEGAGQVDLVTFSYSLTMIPDWFAAIEHAYRLLKPGGTIGIADFYVARKHAGESERRHGWLTREFWQTFFAVDNVFLSPDHLPYLKNRFETVQIKERFGSVPIVPFLYAPYYIYLGRK 247          
BLAST of mRNA_M-pyrifera_M_contig85300.19884.1 vs. uniprot
Match: A0A348AZ80_9STRA (Betaine lipid synthase 1S n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A348AZ80_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.940e-36
Identity = 70/153 (45.75%), Postives = 95/153 (62.09%), Query Frame = 1
Query:    1 VLDLCKPLLDIARARVE-HNGWEDIVELVEGDATDSTLIGRGLPKAGTVDVVTFSYSLTMIPDWEASLDIAYRLLKPGGHIAIGDFTITPDMSLFTRTVWPFFFSMDHVNLNLEHIPALRERFSEITCKTAYGGFPYLN-FIDVPYYHFVGRK 453
            VLDLC  L   A  RV+ H GW   V+++  DA D   +   LP AG+VDV+TFSY+L+MIPDW+A+L  A RLLK GGH+ + DFT+        +T+W   F+ DHV L  EH P LRE+F  +  +  +G FPY+   +  P+Y FVG+K
Sbjct:  110 VLDLCPSLAAQAEERVKRHPGWSSFVQVIVADACDEKAVS--LPPAGSVDVITFSYALSMIPDWKAALANAKRLLKKGGHLCVCDFTVDETQGWGMQTMWSKIFASDHVYLRAEHRPFLREQFKAVHDELGFGTFPYVPPVMRAPWYVFVGQK 260          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85300.19884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8BYA9_CAFRO5.740e-5357.62Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A517TBR9_9PLAN3.620e-4349.69Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A6T5VPN0_9STRA5.810e-4248.68Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A061S1T4_9CHLO2.940e-4149.02Sam-dependent methlyltransferase (Fragment) n=1 Ta... [more]
A0A7R9T8K9_9VIRI9.390e-4047.71Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
UPI00142101829.810e-3845.63class I SAM-dependent methyltransferase n=1 Tax=Ru... [more]
A0A5B8MES7_9CHLO4.620e-3745.45S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A2E0SLT7_9PLAN2.120e-3642.77SAM-dependent methyltransferase n=1 Tax=Planctomyc... [more]
A0A517R4D4_9BACT2.530e-3645.91Demethylmenaquinone methyltransferase n=1 Tax=Plan... [more]
A0A348AZ80_9STRA2.940e-3645.75Betaine lipid synthase 1S n=1 Tax=Nannochloropsis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85300contigM-pyrifera_M_contig85300:1..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score134.0
Seed ortholog evalue5.8e-29
Seed eggNOG ortholog756272.Plabr_0328
Preferred namebtaB
KEGG rclassRC00003,RC02308
KEGG koko:K13623
KEGG ReactionR09073
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquinone menaquinone biosynthesis
EggNOG OGs2IYJ9@203682,COG0500@1,COG2226@2
COG Functional cat.H
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.717611-CDS-M-pyrifera_M_contig85300:0..4591622816761.717611-CDS-M-pyrifera_M_contig85300:0..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85300 1..459 +
1692278163.0920079-CDS-M-pyrifera_M_contig85300:0..4591692278163.0920079-CDS-M-pyrifera_M_contig85300:0..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85300 1..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85300.19884.1prot_M-pyrifera_M_contig85300.19884.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85300 1..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85300.19884.1

>prot_M-pyrifera_M_contig85300.19884.1 ID=prot_M-pyrifera_M_contig85300.19884.1|Name=mRNA_M-pyrifera_M_contig85300.19884.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
VLDLCKPLLDIARARVEHNGWEDIVELVEGDATDSTLIGRGLPKAGTVDV
VTFSYSLTMIPDWEASLDIAYRLLKPGGHIAIGDFTITPDMSLFTRTVWP
FFFSMDHVNLNLEHIPALRERFSEITCKTAYGGFPYLNFIDVPYYHFVGR
KE*
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mRNA from alignment at M-pyrifera_M_contig85300:1..459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85300.19884.1 ID=mRNA_M-pyrifera_M_contig85300.19884.1|Name=mRNA_M-pyrifera_M_contig85300.19884.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig85300:1..459+ (Macrocystis pyrifera P11B4 male)
GTCTTGGATCTCTGCAAACCACTGCTCGACATTGCCCGCGCACGTGTGGA ACACAATGGGTGGGAAGACATTGTCGAGTTGGTGGAAGGAGATGCCACTG ACTCTACTCTCATCGGCCGCGGATTGCCAAAGGCTGGCACTGTGGATGTC GTCACCTTCTCCTACTCTCTCACCATGATCCCAGACTGGGAAGCATCCCT CGACATTGCGTACCGCCTCCTCAAGCCTGGCGGACACATTGCCATTGGAG ACTTTACCATCACTCCAGACATGAGCCTCTTCACCAGAACCGTCTGGCCC TTCTTCTTCTCCATGGACCACGTCAACCTCAACCTCGAACACATCCCAGC GCTCCGCGAACGATTCTCTGAAATCACCTGCAAAACTGCCTATGGAGGGT TCCCGTACCTCAACTTCATCGATGTCCCATACTACCACTTTGTGGGAAGG AAGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85300:1..459+

>mRNA_M-pyrifera_M_contig85300.19884.1 ID=mRNA_M-pyrifera_M_contig85300.19884.1|Name=mRNA_M-pyrifera_M_contig85300.19884.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig85300:1..459+ (Macrocystis pyrifera P11B4 male)
GTCTTGGATCTCTGCAAACCACTGCTCGACATTGCCCGCGCACGTGTGGA
ACACAATGGGTGGGAAGACATTGTCGAGTTGGTGGAAGGAGATGCCACTG
ACTCTACTCTCATCGGCCGCGGATTGCCAAAGGCTGGCACTGTGGATGTC
GTCACCTTCTCCTACTCTCTCACCATGATCCCAGACTGGGAAGCATCCCT
CGACATTGCGTACCGCCTCCTCAAGCCTGGCGGACACATTGCCATTGGAG
ACTTTACCATCACTCCAGACATGAGCCTCTTCACCAGAACCGTCTGGCCC
TTCTTCTTCTCCATGGACCACGTCAACCTCAACCTCGAACACATCCCAGC
GCTCCGCGAACGATTCTCTGAAATCACCTGCAAAACTGCCTATGGAGGGT
TCCCGTACCTCAACTTCATCGATGTCCCATACTACCACTTTGTGGGAAGG
AAGGAATAGGTCTTGGATCTCTGCAAACCACTGCTCGACATTGCCCGCGC
ACGTGTGGAACACAATGGGTGGGAAGACATTGTCGAGTTGGTGGAAGGAG
ATGCCACTGACTCTACTCTCATCGGCCGCGGATTGCCAAAGGCTGGCACT
GTGGATGTCGTCACCTTCTCCTACTCTCTCACCATGATCCCAGACTGGGA
AGCATCCCTCGACATTGCGTACCGCCTCCTCAAGCCTGGCGGACACATTG
CCATTGGAGACTTTACCATCACTCCAGACATGAGCCTCTTCACCAGAACC
GTCTGGCCCTTCTTCTTCTCCATGGACCACGTCAACCTCAACCTCGAACA
CATCCCAGCGCTCCGCGAACGATTCTCTGAAATCACCTGCAAAACTGCCT
ATGGAGGGTTCCCGTACCTCAACTTCATCGATGTCCCATACTACCACTTT
GTGGGAAGGAAGGAATAG
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