mRNA_M-pyrifera_M_contig85247.19873.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85247.19873.1
Unique NamemRNA_M-pyrifera_M_contig85247.19873.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85247.19873.1 vs. uniprot
Match: A0A5A8DH77_CAFRO (LYR motif-containing protein 2 n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DH77_CAFRO)

HSP 1 Score: 64.3 bits (155), Expect = 3.650e-11
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 MPRLPPSPLPFRSFLVRSKVVRLYRDFLRATAGMPENERRELRRAIRAEFESNRNISDPLKQQSLLVEGVKQLDQVKGM 237
            MP+LP      R F+ ++KV+  YR+FLRA AG+ E +R   R  I+AE+  ++N +DP + ++L+VEG +QLDQ++ +
Sbjct:    1 MPKLPAQLPSLRQFMQKAKVLAQYREFLRAAAGLEEPQRSHTRSHIKAEYRRHKNETDPGQVRTLMVEGARQLDQLRDL 79          
BLAST of mRNA_M-pyrifera_M_contig85247.19873.1 vs. uniprot
Match: A0A5A8E550_CAFRO (LYR motif-containing protein 2 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E550_CAFRO)

HSP 1 Score: 61.2 bits (147), Expect = 4.380e-9
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   19 SPLP-FRSFLVRSKVVRLYRDFLRATAGMPENERRELRRAIRAEFESNRNISDPLKQQSLLVEGVKQLDQVKGM 237
             PLP  R F+ ++KV+  YR+FLRA AG+ E +R   R  I+AE+  ++N +DP + ++L+VEG +QLDQ++ +
Sbjct:  440 GPLPSLRQFMQKAKVLAQYREFLRAAAGLEEPQRSHTRSHIKAEYRRHKNETDPGQVRTLMVEGARQLDQLRDL 513          
BLAST of mRNA_M-pyrifera_M_contig85247.19873.1 vs. uniprot
Match: A0A0K9PJ98_ZOSMR (LYR motif-containing protein 2 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PJ98_ZOSMR)

HSP 1 Score: 56.2 bits (134), Expect = 1.250e-8
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   34 RSFLVRSKVVRLYRDFLRATAGMPENERRELRRAIRAEFESNRNISDPLKQQSLLVEGVKQLDQVKGMTGM 246
            ++F+VR++V++LYRD LR     P + R ELR+ +RAE E NR  SD  K + L+ EG+++L +++ M  M
Sbjct:    4 QAFIVRARVLKLYRDALRVCRHAPPHTRAELRQTVRAEMEKNRVCSDKQKLRFLISEGMRRLKELQEMLDM 74          
BLAST of mRNA_M-pyrifera_M_contig85247.19873.1 vs. uniprot
Match: A0A161YEE1_DAUCS (LYR motif-containing protein 2 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161YEE1_DAUCS)

HSP 1 Score: 55.8 bits (133), Expect = 1.770e-8
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   25 LPFRSFLVRSKVVRLYRDFLRATAGMPENERRELRRAIRAEFESNRNISDPLKQQSLLVEGVKQLDQVKGMTGM 246
            L FRSF++R++V++LYR  L+ T   P + + ELR  IR EFES RN SD  + + L+ +G+++L ++  M  M
Sbjct:    5 LDFRSFILRARVLKLYRQALKITKRAPCDSKAELRNIIRQEFESQRNCSDKQRIRFLISDGLERLKRLDEMLDM 78          
BLAST of mRNA_M-pyrifera_M_contig85247.19873.1 vs. uniprot
Match: A0A5J5B2E5_9ASTE (LYR motif-containing protein 2 n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5B2E5_9ASTE)

HSP 1 Score: 55.1 bits (131), Expect = 3.550e-8
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   25 LPFRSFLVRSKVVRLYRDFLRATAGMPENERRELRRAIRAEFESNRNISDPLKQQSLLVEGVKQLDQVKGMTGM 246
            L  + F++R++V++LYR  LR T   P + R ELR+ IR E E+NRN SD  K + L+ +G   L+++KG+  M
Sbjct:    5 LDLQDFIIRARVLKLYRQALRTTRRAPVHARAELRQTIRQEMENNRNCSDKQKTRFLISQG---LERLKGLNEM 75          
BLAST of mRNA_M-pyrifera_M_contig85247.19873.1 vs. uniprot
Match: K3Z0S8_SETIT (LYR motif-containing protein 2 n=3 Tax=Paniceae TaxID=147428 RepID=K3Z0S8_SETIT)

HSP 1 Score: 55.1 bits (131), Expect = 3.630e-8
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   34 RSFLVRSKVVRLYRDFLRATAGMPENERRELRRAIRAEFESNRNISDPLKQQSLLVEG---VKQLDQVKGMTG 243
            R+F++R++V++LYR  LR T   PE+ R ELR+  RAEFE  R+  D  K + L+ EG   +K LD++  MTG
Sbjct:    8 RAFILRTRVLKLYRQALRITQRAPEHARDELRKTTRAEFEKYRHCDDNQKIRFLISEGKQRLKGLDELLDMTG 80          
BLAST of mRNA_M-pyrifera_M_contig85247.19873.1 vs. uniprot
Match: UPI000B8CDD42 (uncharacterized protein LOC110823419 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CDD42)

HSP 1 Score: 55.1 bits (131), Expect = 3.630e-8
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   34 RSFLVRSKVVRLYRDFLRATAGMPENERRELRRAIRAEFESNRNISDPLKQQSLLVEGVKQLDQVKGMTGM 246
            + F++R++V++LYR  LR     P+  R EL R IR E ESNRN SD  K + L+ EG+K+L  +  M  M
Sbjct:    8 QDFILRARVLKLYRQALRTARRAPDRARVELERTIRQEMESNRNYSDKQKIRFLISEGLKRLKDLDEMLDM 78          
BLAST of mRNA_M-pyrifera_M_contig85247.19873.1 vs. uniprot
Match: A0A1Y1I873_KLENI (LYR motif-containing protein 2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I873_KLENI)

HSP 1 Score: 55.1 bits (131), Expect = 3.990e-8
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   25 LPFRSFLVRSKVVRLYRDFLRATAGMPENERRELRRAIRAEFESNRNISDPLKQQSLLVEGVKQLDQVKGM 237
            L  RSF++RS+V+ LYRD LRA    P   R ELR+ +R EFE+ R+  DP   +  L +G+++L  +KGM
Sbjct:   11 LDLRSFILRSQVLGLYRDALRAARQAPLESRAELRQQVRNEFETFRHERDPQAIRFFLSDGLQKLKDLKGM 81          
BLAST of mRNA_M-pyrifera_M_contig85247.19873.1 vs. uniprot
Match: A0A6J1IFA5_CUCMA (LYR motif-containing protein 2 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IFA5_CUCMA)

HSP 1 Score: 53.9 bits (128), Expect = 1.030e-7
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   25 LPFRSFLVRSKVVRLYRDFLRATAGMPENERRELRRAIRAEFESNRNISDPLKQQSLLVEG---VKQLDQVKGMTG 243
            L  + F++R++V++LYR  LR T   P + R ELR  IR E E+NR+ SD  K + LL EG   +K+LD++  M G
Sbjct:    5 LDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKIRFLLSEGRERLKRLDEMLDMQG 80          
BLAST of mRNA_M-pyrifera_M_contig85247.19873.1 vs. uniprot
Match: A0A5J9UXG6_9POAL (LYR motif-containing protein 2 n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UXG6_9POAL)

HSP 1 Score: 53.9 bits (128), Expect = 1.030e-7
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   34 RSFLVRSKVVRLYRDFLRATAGMPENERRELRRAIRAEFESNRNISDPLKQQSLLVEGV---KQLDQVKGMTG 243
            R+F++R++V++LYR  LR T   PE+ R ELR+  RAE E  R+  D  K + L+ EG+   K LD++  MTG
Sbjct:    8 RAFIMRTRVLKLYRQALRVTRRAPEHARDELRQTARAEIEKYRDCDDKQKIRFLISEGMQRLKDLDELLDMTG 80          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85247.19873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DH77_CAFRO3.650e-1141.77LYR motif-containing protein 2 n=3 Tax=Cafeteria r... [more]
A0A5A8E550_CAFRO4.380e-943.24LYR motif-containing protein 2 n=1 Tax=Cafeteria r... [more]
A0A0K9PJ98_ZOSMR1.250e-842.25LYR motif-containing protein 2 n=1 Tax=Zostera mar... [more]
A0A161YEE1_DAUCS1.770e-841.89LYR motif-containing protein 2 n=1 Tax=Daucus caro... [more]
A0A5J5B2E5_9ASTE3.550e-841.89LYR motif-containing protein 2 n=1 Tax=Nyssa sinen... [more]
K3Z0S8_SETIT3.630e-845.21LYR motif-containing protein 2 n=3 Tax=Paniceae Ta... [more]
UPI000B8CDD423.630e-843.66uncharacterized protein LOC110823419 n=1 Tax=Caric... [more]
A0A1Y1I873_KLENI3.990e-845.07LYR motif-containing protein 2 n=1 Tax=Klebsormidi... [more]
A0A6J1IFA5_CUCMA1.030e-743.42LYR motif-containing protein 2 n=3 Tax=Cucurbita T... [more]
A0A5J9UXG6_9POAL1.030e-743.84LYR motif-containing protein 2 n=1 Tax=Eragrostis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85247contigM-pyrifera_M_contig85247:41..286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue4.3e-07
Seed eggNOG ortholog4565.Traes_6AL_B04510C2B.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the complex I LYR family
EggNOG OGs2CGEY@1,2S5CQ@2759,37W6J@33090,3GKJJ@35493,3IJ4T@38820,3M18K@4447
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.1898692-CDS-M-pyrifera_M_contig85247:40..2861622816761.1898692-CDS-M-pyrifera_M_contig85247:40..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85247 41..286 +
1692278162.8002217-CDS-M-pyrifera_M_contig85247:40..2861692278162.8002217-CDS-M-pyrifera_M_contig85247:40..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85247 41..286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85247.19873.1prot_M-pyrifera_M_contig85247.19873.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85247 41..286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85247.19873.1

>prot_M-pyrifera_M_contig85247.19873.1 ID=prot_M-pyrifera_M_contig85247.19873.1|Name=mRNA_M-pyrifera_M_contig85247.19873.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MPRLPPSPLPFRSFLVRSKVVRLYRDFLRATAGMPENERRELRRAIRAEF
ESNRNISDPLKQQSLLVEGVKQLDQVKGMTGM
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mRNA from alignment at M-pyrifera_M_contig85247:41..286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85247.19873.1 ID=mRNA_M-pyrifera_M_contig85247.19873.1|Name=mRNA_M-pyrifera_M_contig85247.19873.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig85247:41..286+ (Macrocystis pyrifera P11B4 male)
ATGCCACGCCTTCCTCCTTCACCATTACCCTTCCGCTCCTTCCTTGTACG GAGCAAAGTAGTTCGTTTGTATCGTGACTTTCTCCGTGCGACTGCAGGAA TGCCCGAGAATGAACGCAGAGAACTTCGAAGAGCGATTCGCGCTGAATTC GAGTCGAACCGCAACATCTCTGATCCCTTGAAGCAGCAATCGTTACTTGT AGAGGGTGTGAAGCAGCTTGATCAAGTGAAAGGAATGACTGGGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85247:41..286+

>mRNA_M-pyrifera_M_contig85247.19873.1 ID=mRNA_M-pyrifera_M_contig85247.19873.1|Name=mRNA_M-pyrifera_M_contig85247.19873.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig85247:41..286+ (Macrocystis pyrifera P11B4 male)
ATGCCACGCCTTCCTCCTTCACCATTACCCTTCCGCTCCTTCCTTGTACG
GAGCAAAGTAGTTCGTTTGTATCGTGACTTTCTCCGTGCGACTGCAGGAA
TGCCCGAGAATGAACGCAGAGAACTTCGAAGAGCGATTCGCGCTGAATTC
GAGTCGAACCGCAACATCTCTGATCCCTTGAAGCAGCAATCGTTACTTGT
AGAGGGTGTGAAGCAGCTTGATCAAGTGAAAGGAATGACTGGGATGATGC
CACGCCTTCCTCCTTCACCATTACCCTTCCGCTCCTTCCTTGTACGGAGC
AAAGTAGTTCGTTTGTATCGTGACTTTCTCCGTGCGACTGCAGGAATGCC
CGAGAATGAACGCAGAGAACTTCGAAGAGCGATTCGCGCTGAATTCGAGT
CGAACCGCAACATCTCTGATCCCTTGAAGCAGCAATCGTTACTTGTAGAG
GGTGTGAAGCAGCTTGATCAAGTGAAAGGAATGACTGGGATG
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