mRNA_M-pyrifera_M_contig85242.19870.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85242.19870.1
Unique NamemRNA_M-pyrifera_M_contig85242.19870.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85242.19870.1 vs. uniprot
Match: A0A127MII6_9SPHN (Uncharacterized protein n=1 Tax=Sphingorhabdus sp. M41 TaxID=1806885 RepID=A0A127MII6_9SPHN)

HSP 1 Score: 418 bits (1075), Expect = 1.140e-145
Identity = 226/259 (87.26%), Postives = 242/259 (93.44%), Query Frame = 1
Query:    4 AAGLAMTHAIGDVSDELSSRATVQIIEANPQTRSSQAEVAAKRLRAIPLIKEVRVLPPEEIKALIEPWLGTQDLEDDIPLPALIDVKMVRAATDAEYQSLRSALQSVAPGARIEPSSGYIAPVFSLVRSFQWIAFGLVALLALATGAAVIISARSALNTHTETIAVVHLLGGTDQQISRLFQRRIALDALLGGLLGLIGGALIIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMVTAKLTVIGALKKIL 780
            AAGLAMT A+GDVSDELSSRATVQIIEANP +R+ QA  AA+RLRA+PLI+EVRVLPPEEI+ALIEPWLG QDL DDIPLPALID+K+ RA T AEYQSLRSALQ +APGAR+EPSSGYIAPV SLVRSFQWIAFGLV LLALATGAAVIISARSALNTH+ETIAVVHLLGGTDQQISRLFQRRIALDALLGGL+GL GGA IIWLIS QL+ALGSGLVQS+GLDWWSWLIIAVIPILGM LAM+TAKLTVIGALKKIL
Sbjct:   40 AAGLAMTRAMGDVSDELSSRATVQIIEANPDSRNRQATAAAERLRALPLIEEVRVLPPEEIEALIEPWLGAQDLADDIPLPALIDLKLTRAGTSAEYQSLRSALQPIAPGARVEPSSGYIAPVISLVRSFQWIAFGLVGLLALATGAAVIISARSALNTHSETIAVVHLLGGTDQQISRLFQRRIALDALLGGLIGLAGGAAIIWLISIQLTALGSGLVQSIGLDWWSWLIIAVIPILGMCLAMITAKLTVIGALKKIL 298          
BLAST of mRNA_M-pyrifera_M_contig85242.19870.1 vs. uniprot
Match: UPI001593DF28 (cell division protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI001593DF28)

HSP 1 Score: 416 bits (1070), Expect = 6.570e-145
Identity = 223/258 (86.43%), Postives = 241/258 (93.41%), Query Frame = 1
Query:    4 AAGLAMTHAIGDVSDELSSRATVQIIEANPQTRSSQAEVAAKRLRAIPLIKEVRVLPPEEIKALIEPWLGTQDLEDDIPLPALIDVKMVRAATDAEYQSLRSALQSVAPGARIEPSSGYIAPVFSLVRSFQWIAFGLVALLALATGAAVIISARSALNTHTETIAVVHLLGGTDQQISRLFQRRIALDALLGGLLGLIGGALIIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMVTAKLTVIGALKKI 777
            AAGLAMT A+GDVSDELSSRATVQI+EAN + RS QA   A+RLR+IPL++EVRVLPPEEI+ALIEPWLGTQDL +DIPLPAL+DVK+ RAATDAEYQSLRS LQ +APGARIEPSSGYIAPV SLVRSFQWIAFGLVALLALAT +AVIISARSALNTH ETIAVVHLLGGTD+QISRLFQRRIALDALLGGL+GL+GG  IIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAM+TA+ TVIGALKKI
Sbjct:   40 AAGLAMTRAMGDVSDELSSRATVQIVEANSEIRSDQAAAVAERLRSIPLVEEVRVLPPEEIEALIEPWLGTQDLGEDIPLPALVDVKLARAATDAEYQSLRSDLQRIAPGARIEPSSGYIAPVISLVRSFQWIAFGLVALLALATASAVIISARSALNTHGETIAVVHLLGGTDEQISRLFQRRIALDALLGGLIGLVGGGAIIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMITARWTVIGALKKI 297          
BLAST of mRNA_M-pyrifera_M_contig85242.19870.1 vs. uniprot
Match: A0A220W8I5_9SPHN (Cell division ABC transporter subunit FtsX n=6 Tax=Sphingomonadales TaxID=204457 RepID=A0A220W8I5_9SPHN)

HSP 1 Score: 415 bits (1066), Expect = 2.670e-144
Identity = 224/259 (86.49%), Postives = 239/259 (92.28%), Query Frame = 1
Query:    4 AAGLAMTHAIGDVSDELSSRATVQIIEANPQTRSSQAEVAAKRLRAIPLIKEVRVLPPEEIKALIEPWLGTQDLEDDIPLPALIDVKMVRAATDAEYQSLRSALQSVAPGARIEPSSGYIAPVFSLVRSFQWIAFGLVALLALATGAAVIISARSALNTHTETIAVVHLLGGTDQQISRLFQRRIALDALLGGLLGLIGGALIIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMVTAKLTVIGALKKIL 780
            AAGLAMT AIGDVSDELSSRATVQIIEA+P+ RS QA  AA RLRA+PLI+EVRVLPPEEIKALIEPWLG+QDL +DIPLPALID+K+VR ATD EYQSLR ALQ +APGAR+EPSSGYIAPV +LVRS QWIAFGLV LLALATGAAVIISARSALNTH ETIAVVHLLGGTDQQISRLFQRRIALDALLGGL+GL GG  IIWLIS QL+ALGSGLV+SVGLDWWSWLIIA IPILGMFLAMVTA+LTVIGALKKIL
Sbjct:   40 AAGLAMTRAIGDVSDELSSRATVQIIEADPEVRSRQATAAAARLRALPLIEEVRVLPPEEIKALIEPWLGSQDLAEDIPLPALIDLKLVRVATDEEYQSLRGALQEIAPGARVEPSSGYIAPVIALVRSLQWIAFGLVGLLALATGAAVIISARSALNTHGETIAVVHLLGGTDQQISRLFQRRIALDALLGGLIGLAGGTAIIWLISSQLTALGSGLVESVGLDWWSWLIIAAIPILGMFLAMVTARLTVIGALKKIL 298          
BLAST of mRNA_M-pyrifera_M_contig85242.19870.1 vs. uniprot
Match: A0A1B6ZC32_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonadales bacterium EhC05 TaxID=1849171 RepID=A0A1B6ZC32_9SPHN)

HSP 1 Score: 358 bits (918), Expect = 8.730e-122
Identity = 192/257 (74.71%), Postives = 224/257 (87.16%), Query Frame = 1
Query:    4 AAGLAMTHAIGDVSDELSSRATVQIIEANPQTRSSQAEVAAKRLRAIPLIKEVRVLPPEEIKALIEPWLGTQDLEDDIPLPALIDVKMVRAATDAEYQSLRSALQSVAPGARIEPSSGYIAPVFSLVRSFQWIAFGLVALLALATGAAVIISARSALNTHTETIAVVHLLGGTDQQISRLFQRRIALDALLGGLLGLIGGALIIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMVTAKLTVIGALKK 774
            AAGLA+  A G+V+D+LSSRATVQIIEAN + R+ QA   A RLR + L+++VRVLP +EI  LIEPWLGTQ+L +DIPLPALID+K+ R A+D+E QSLRS +Q +A  AR+EPSSGYIAPV +LVRS QWIAFGLVALLALAT AAVIISAR+ LNTH ETIAVVHLLGGTD QISRLFQRRIALDALLGG++GL+GGA IIWLI+ QLSALGSGLVQS+GL W SWLIIA++PILGMFLAMVTA++TV+GALKK
Sbjct:   40 AAGLALVQAAGNVTDDLSSRATVQIIEANAEVRARQARAVAARLRGLSLVEQVRVLPQKEIDELIEPWLGTQNLGEDIPLPALIDLKLTRTASDSELQSLRSVIQPLAADARVEPSSGYIAPVIALVRSLQWIAFGLVALLALATAAAVIISARATLNTHRETIAVVHLLGGTDHQISRLFQRRIALDALLGGMIGLVGGAAIIWLIAMQLSALGSGLVQSLGLSWLSWLIIALVPILGMFLAMVTARMTVMGALKK 296          
BLAST of mRNA_M-pyrifera_M_contig85242.19870.1 vs. uniprot
Match: A0A6H2DP18_9SPHN (Cell division protein n=1 Tax=Parasphingorhabdus halotolerans TaxID=2725558 RepID=A0A6H2DP18_9SPHN)

HSP 1 Score: 324 bits (831), Expect = 1.450e-108
Identity = 174/259 (67.18%), Postives = 213/259 (82.24%), Query Frame = 1
Query:    4 AAGLAMTHAIGDVSDELSSRATVQIIEANPQTRSSQAEVAAKRLRAIPLIKEVRVLPPEEIKALIEPWLGTQDLEDDIPLPALIDVKMVRAATDAEYQSLRSALQSVAPGARIEPSSGYIAPVFSLVRSFQWIAFGLVALLALATGAAVIISARSALNTHTETIAVVHLLGGTDQQISRLFQRRIALDALLGGLLGLIGGALIIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMVTAKLTVIGALKKIL 780
            AAGLA + A   V+DELSSRATVQI+EANP +R+ Q   AA  LR +  + EVRVLP  EI+ALIEPWLGT+ L  +IP+PALID+K+ R   + E Q+LR+A++ +A  AR+EPSSG+I+PV SLVRS QWIA GLVALLALATGAA II+AR+ALNTH ETI+V+HLLG TD+QISRLFQRRIALDALLGGLLGL+GG LI+WL+S Q+SALGSG  QS GL W SWLIIA IPI+GM +AM +A++T++GAL+KIL
Sbjct:   40 AAGLAFSEAARSVTDELSSRATVQIVEANPDSRTQQTNDAAAGLRGLDFVSEVRVLPQSEIEALIEPWLGTEGLAGEIPIPALIDLKLDRPVNEKELQALRNAVKPLARSARVEPSSGFISPVISLVRSLQWIAAGLVALLALATGAATIIAARAALNTHRETISVIHLLGATDRQISRLFQRRIALDALLGGLLGLLGGGLIVWLVSMQVSALGSGXXQSXGLSWISWLIIAAIPIMGMLIAMFSARMTIMGALRKIL 298          
BLAST of mRNA_M-pyrifera_M_contig85242.19870.1 vs. uniprot
Match: A0A1N6CQ09_9SPHN (Cell division transport system permease protein n=2 Tax=Parasphingorhabdus marina TaxID=394732 RepID=A0A1N6CQ09_9SPHN)

HSP 1 Score: 319 bits (817), Expect = 1.930e-106
Identity = 174/260 (66.92%), Postives = 208/260 (80.00%), Query Frame = 1
Query:    1 TAAGLAMTHAIGDVSDELSSRATVQIIEANPQTRSSQAEVAAKRLRAIPLIKEVRVLPPEEIKALIEPWLGTQDLEDDIPLPALIDVKMVRAATDAEYQSLRSALQSVAPGARIEPSSGYIAPVFSLVRSFQWIAFGLVALLALATGAAVIISARSALNTHTETIAVVHLLGGTDQQISRLFQRRIALDALLGGLLGLIGGALIIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMVTAKLTVIGALKKIL 780
            TAAGLA + A   VSD+LSSR TVQI+EAN   R+ Q+E  A  LR + ++ +VRVLP  EI+ LIEPWLGTQD+ +DIPLPALIDV + R A  AE + L+SA   ++  AR+EPSSG I PV  LVRS QWIA GLV LLA AT AAVIISAR+ALNTH ETI ++HLLGGTD+QIS+LFQRRIALDALLGG++GL+GGA IIWL+  QLSALGSGLVQS+GL W S LIIA IPI+GM LAM+TA++T++GALKKIL
Sbjct:   39 TAAGLAFSEAARSVSDDLSSRVTVQIVEANADVRNRQSEDVAASLRGLDIVAQVRVLPEGEIRELIEPWLGTQDIGEDIPLPALIDVTLARKAGPAELEELQSAAAQLSSAARVEPSSGLIEPVIDLVRSLQWIALGLVFLLAAATAAAVIISARAALNTHDETIGIIHLLGGTDRQISKLFQRRIALDALLGGIIGLVGGAAIIWLLGMQLSALGSGLVQSLGLSWQSMLIIAAIPIMGMLLAMMTARMTIMGALKKIL 298          
BLAST of mRNA_M-pyrifera_M_contig85242.19870.1 vs. uniprot
Match: UPI001AA05597 (cell division protein n=2 Tax=Parasphingorhabdus TaxID=2709685 RepID=UPI001AA05597)

HSP 1 Score: 318 bits (816), Expect = 3.830e-106
Identity = 182/270 (67.41%), Postives = 217/270 (80.37%), Query Frame = 1
Query:    1 TAAGLAMTHAIGDVSDELSSRATVQIIEANPQTRSSQAEVAAKRLRAIPLIKEVRVLPPEEIKALIEPWLG----TQD------LEDDIPLPALIDVKMVRAATDAEYQSLRSALQSVAPGARIEPSSGYIAPVFSLVRSFQWIAFGLVALLALATGAAVIISARSALNTHTETIAVVHLLGGTDQQISRLFQRRIALDALLGGLLGLIGGALIIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMVTAKLTVIGALKKIL 780
            TA GLA   A  +VSD+LSSRATVQI+EANP  ++ Q+  AA RLR + L++EVRVLPP+EI+ LI PWLG    TQD      L +DIPLPALID+K+VR A   E   LR+A++ +A  AR+EPSSG IAPV +LV+S QWIAFGLVALLA+AT AAVIISAR+ALNTH ETI V+HLLGGTD+QISRLFQRRIALDALLGG+LGLI G  II L+  QLSALGSGLV+S+GL W+SWLII  +PILGM LAMVTA++TV+GAL+KIL
Sbjct:   39 TATGLAFAEAGRNVSDQLSSRATVQIVEANPDLKARQSNDAAARLRGMALVEEVRVLPPQEIEDLIAPWLGQTAGTQDELEAGSLLEDIPLPALIDLKLVRPAGPKELDELRAAVRPLADSARVEPSSGLIAPVIALVQSLQWIAFGLVALLAMATAAAVIISARAALNTHKETIGVIHLLGGTDRQISRLFQRRIALDALLGGILGLICGTAIILLLGMQLSALGSGLVESLGLSWYSWLIIGAVPILGMTLAMVTARMTVMGALRKIL 308          
BLAST of mRNA_M-pyrifera_M_contig85242.19870.1 vs. uniprot
Match: UPI000D69BC3F (FtsX-like permease family protein n=1 Tax=Sphingorhabdus sp. EL138 TaxID=2073156 RepID=UPI000D69BC3F)

HSP 1 Score: 313 bits (802), Expect = 4.780e-104
Identity = 179/268 (66.79%), Postives = 213/268 (79.48%), Query Frame = 1
Query:    1 TAAGLAMTHAIGDVSDELSSRATVQIIEANPQTRSSQAEVAAKRLRAIPLIKEVRVLPPEEIKALIEPWLG--------TQDLEDDIPLPALIDVKMVRAATDAEYQSLRSALQSVAPGARIEPSSGYIAPVFSLVRSFQWIAFGLVALLALATGAAVIISARSALNTHTETIAVVHLLGGTDQQISRLFQRRIALDALLGGLLGLIGGALIIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMVTAKLTVIGALKKIL 780
            TA GLA T A  +VSD+LSSRATVQIIEANP  ++ Q   AA RLR + L++EVR+LP +EI+ LI PWLG        T  L +DIPLPALID+K+ +  ++ E ++LR+ ++ +A  ARIEPSS  IAPV +LVRS QWIAFGLV LLA+AT AAVIISAR+ALNTH ETI V+HLLGGTD+QISRLFQRRIALDALLGG+LGLI GA II L+  QLSALGSGLVQS+ L W+SWLII  IPILGM LAMVTA++TV+GALKKIL
Sbjct:   39 TAIGLAFTEAGQNVSDQLSSRATVQIIEANPDLKAQQTSDAAARLRGMELVEEVRILPSKEIEDLIAPWLGQSADGGQDTGGLLEDIPLPALIDLKLAQPISEKELEALRTGIRPLAASARIEPSSALIAPVIALVRSLQWIAFGLVILLAIATAAAVIISARAALNTHKETIGVIHLLGGTDRQISRLFQRRIALDALLGGVLGLICGAAIILLLGMQLSALGSGLVQSLDLSWYSWLIIGAIPILGMILAMVTARMTVMGALKKIL 306          
BLAST of mRNA_M-pyrifera_M_contig85242.19870.1 vs. uniprot
Match: A0A2E4CTQ3_9SPHN (Cell division protein n=1 Tax=Citromicrobium sp. TaxID=2024827 RepID=A0A2E4CTQ3_9SPHN)

HSP 1 Score: 236 bits (601), Expect = 6.810e-74
Identity = 125/258 (48.45%), Postives = 186/258 (72.09%), Query Frame = 1
Query:    7 AGLAMTHAIGDVSDELSSRATVQIIEANPQTRSSQAEVAAKRLRAIPLIKEVRVLPPEEIKALIEPWLGTQDLEDDIPLPALIDVKMVRAATDAEYQSLRSALQSVAPGARIEPSSGYIAPVFSLVRSFQWIAFGLVALLALATGAAVIISARSALNTHTETIAVVHLLGGTDQQISRLFQRRIALDALLGGLLGLIGGALIIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMVTAKLTVIGALKKIL 780
            AGL++ +  GD   ELS  ATVQI+EA+P TR+ QAE A + L+++P+++E R +P EE+ AL+EPWLG     + +P+PALIDV++   A +A  ++LR  L  VAP AR++  S ++ PVF+ + S Q++A  LV LLA+ + AAV ++ARSAL  + ETIA+VHLLGGTD QI++LFQR I  D+++GG++GL+ G   +  +  Q +AL SG++ S GLDW  W++IA+IPILG+ LA+ TA+ TV+ A++K+L
Sbjct:   28 AGLSLGNLAGDARSELSGGATVQILEADPATRARQAEAAQELLQSLPMVEESRQIPQEELDALLEPWLGASGDAETVPVPALIDVRLGGRADEAAIENLRQQLAEVAPDARVDAQSSWLRPVFNALTSLQYVALALVLLLAVTSAAAVFLAARSALGNNRETIAIVHLLGGTDGQIAQLFQRAILRDSIIGGIVGLLLGLAAVLGLGYQFAALDSGMIASGGLDWLDWIVIALIPILGVVLAVATARFTVLAAVRKML 285          
BLAST of mRNA_M-pyrifera_M_contig85242.19870.1 vs. uniprot
Match: A0A3D1P276_9SPHN (Cell division protein n=1 Tax=Novosphingobium sp. TaxID=1874826 RepID=A0A3D1P276_9SPHN)

HSP 1 Score: 233 bits (594), Expect = 7.550e-73
Identity = 127/259 (49.03%), Postives = 181/259 (69.88%), Query Frame = 1
Query:    4 AAGLAMTHAIGDVSDELSSRATVQIIEANPQTRSSQAEVAAKRLRAIPLIKEVRVLPPEEIKALIEPWLGTQDLEDDIPLPALIDVKMVRAATDAEYQSLRSALQSVAPGARIEPSSGYIAPVFSLVRSFQWIAFGLVALLALATGAAVIISARSALNTHTETIAVVHLLGGTDQQISRLFQRRIALDALLGGLLGLIGGALIIWLISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMVTAKLTVIGALKKIL 780
            AAGLA+++   + SD LS  ATVQ++EANP  R  QA+ AA+ L+A P + +VR++  +E++ LIEPWLG +  ED IP+PAL+DV++       +   LR  ++ VAP AR++  S ++ PVFS + S QW+A  LVALL  A  AAV+++ R+AL T+ ETI +VHLLGGTD QI+R+FQR I  DA  GG +GL  G +++ L+  +   LG+GLV S  LDW  W+++A++PI G+ LAMVTA+LTVI AL+K+L
Sbjct:   26 AAGLALSNTASNASDALSGGATVQVVEANPAERDRQAKEAARVLQATPGVIDVRIVSQQEVEKLIEPWLGVRTGEDGIPVPALVDVRLRDGVDGEKLGQLRRQVRQVAPAARVDAQSTWLKPVFSAIDSLQWLALALVALLGFALAAAVLLAVRTALGTNRETIEIVHLLGGTDSQIARIFQRTIGFDAAGGGAVGLGLGLVVVLLLGQRFEGLGAGLVDSGALDWIDWVLLALVPIAGVALAMVTARLTVIRALRKML 284          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85242.19870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127MII6_9SPHN1.140e-14587.26Uncharacterized protein n=1 Tax=Sphingorhabdus sp.... [more]
UPI001593DF286.570e-14586.43cell division protein n=1 Tax=Parasphingorhabdus f... [more]
A0A220W8I5_9SPHN2.670e-14486.49Cell division ABC transporter subunit FtsX n=6 Tax... [more]
A0A1B6ZC32_9SPHN8.730e-12274.71Uncharacterized protein n=1 Tax=Sphingomonadales b... [more]
A0A6H2DP18_9SPHN1.450e-10867.18Cell division protein n=1 Tax=Parasphingorhabdus h... [more]
A0A1N6CQ09_9SPHN1.930e-10666.92Cell division transport system permease protein n=... [more]
UPI001AA055973.830e-10667.41cell division protein n=2 Tax=Parasphingorhabdus T... [more]
UPI000D69BC3F4.780e-10466.79FtsX-like permease family protein n=1 Tax=Sphingor... [more]
A0A2E4CTQ3_9SPHN6.810e-7448.45Cell division protein n=1 Tax=Citromicrobium sp. T... [more]
A0A3D1P276_9SPHN7.550e-7349.03Cell division protein n=1 Tax=Novosphingobium sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85242contigM-pyrifera_M_contig85242:84..866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score216.9
Seed ortholog evalue1.1e-53
Seed eggNOG ortholog685035.ADAE01000008_gene2919
Preferred nameftsX
KEGG koko:K09811
KEGG TC3.A.1.140
KEGG Pathwayko02010,map02010
KEGG ModuleM00256
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cell division protein
EggNOG OGs1MXKQ@1224,2K43P@204457,2TSNT@28211,COG2177@1,COG2177@2
COG Functional cat.D
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko03036
Exons1
Model size783
Cds size765
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.060942-CDS-M-pyrifera_M_contig85242:83..8481622816761.060942-CDS-M-pyrifera_M_contig85242:83..848Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85242 84..848 -
1692278162.7015433-CDS-M-pyrifera_M_contig85242:83..8481692278162.7015433-CDS-M-pyrifera_M_contig85242:83..848Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85242 84..848 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.0730424-UTR-M-pyrifera_M_contig85242:848..8661622816761.0730424-UTR-M-pyrifera_M_contig85242:848..866Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85242 849..866 -
1692278162.717547-UTR-M-pyrifera_M_contig85242:848..8661692278162.717547-UTR-M-pyrifera_M_contig85242:848..866Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85242 849..866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85242.19870.1prot_M-pyrifera_M_contig85242.19870.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85242 84..848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85242.19870.1

>prot_M-pyrifera_M_contig85242.19870.1 ID=prot_M-pyrifera_M_contig85242.19870.1|Name=mRNA_M-pyrifera_M_contig85242.19870.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=255bp
MTHAIGDVSDELSSRATVQIIEANPQTRSSQAEVAAKRLRAIPLIKEVRV
LPPEEIKALIEPWLGTQDLEDDIPLPALIDVKMVRAATDAEYQSLRSALQ
SVAPGARIEPSSGYIAPVFSLVRSFQWIAFGLVALLALATGAAVIISARS
ALNTHTETIAVVHLLGGTDQQISRLFQRRIALDALLGGLLGLIGGALIIW
LISGQLSALGSGLVQSVGLDWWSWLIIAVIPILGMFLAMVTAKLTVIGAL
KKIL*
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mRNA from alignment at M-pyrifera_M_contig85242:84..866-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85242.19870.1 ID=mRNA_M-pyrifera_M_contig85242.19870.1|Name=mRNA_M-pyrifera_M_contig85242.19870.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=783bp|location=Sequence derived from alignment at M-pyrifera_M_contig85242:84..866- (Macrocystis pyrifera P11B4 male)
ACCGCCGCCGGGCTCGCGATGACGCACGCGATTGGCGATGTGTCGGATGA ACTGTCGAGCAGGGCGACGGTCCAGATTATCGAAGCCAATCCCCAGACCC GCAGCAGTCAGGCAGAGGTCGCTGCGAAACGATTGCGCGCAATACCGCTG ATAAAGGAGGTCCGTGTCCTGCCGCCCGAAGAGATAAAGGCGCTCATCGA GCCATGGCTCGGCACCCAGGATCTGGAGGATGATATACCGCTGCCGGCCC TGATTGATGTGAAAATGGTCCGCGCCGCCACCGACGCAGAATATCAATCG CTGCGCAGCGCGCTTCAATCCGTCGCACCGGGCGCGCGGATCGAACCGAG CAGCGGCTATATTGCGCCGGTATTTTCGCTGGTCCGCTCTTTTCAGTGGA TTGCCTTTGGTCTGGTCGCCCTGCTGGCTTTGGCGACCGGAGCTGCGGTT ATCATTTCGGCGCGATCGGCGCTCAACACCCATACCGAAACCATCGCGGT GGTGCACTTGCTCGGTGGCACGGACCAGCAGATCAGCCGTTTGTTCCAGC GGCGCATTGCGCTGGATGCGCTGCTCGGCGGATTGCTAGGACTGATCGGC GGTGCCCTGATCATCTGGCTGATCAGCGGGCAATTGTCGGCGCTTGGCTC GGGTCTGGTGCAATCGGTTGGCCTCGACTGGTGGAGCTGGTTGATAATTG CTGTCATTCCGATATTGGGGATGTTCCTTGCCATGGTTACCGCCAAATTG ACGGTCATCGGCGCCCTGAAAAAGATATTGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85242:84..866-

>mRNA_M-pyrifera_M_contig85242.19870.1 ID=mRNA_M-pyrifera_M_contig85242.19870.1|Name=mRNA_M-pyrifera_M_contig85242.19870.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1530bp|location=Sequence derived from alignment at M-pyrifera_M_contig85242:84..866- (Macrocystis pyrifera P11B4 male)
ATGACGCACGCGATTGGCGATGTGTCGGATGAACTGTCGAGCAGGGCGAC
GGTCCAGATTATCGAAGCCAATCCCCAGACCCGCAGCAGTCAGGCAGAGG
TCGCTGCGAAACGATTGCGCGCAATACCGCTGATAAAGGAGGTCCGTGTC
CTGCCGCCCGAAGAGATAAAGGCGCTCATCGAGCCATGGCTCGGCACCCA
GGATCTGGAGGATGATATACCGCTGCCGGCCCTGATTGATGTGAAAATGG
TCCGCGCCGCCACCGACGCAGAATATCAATCGCTGCGCAGCGCGCTTCAA
TCCGTCGCACCGGGCGCGCGGATCGAACCGAGCAGCGGCTATATTGCGCC
GGTATTTTCGCTGGTCCGCTCTTTTCAGTGGATTGCCTTTGGTCTGGTCG
CCCTGCTGGCTTTGGCGACCGGAGCTGCGGTTATCATTTCGGCGCGATCG
GCGCTCAACACCCATACCGAAACCATCGCGGTGGTGCACTTGCTCGGTGG
CACGGACCAGCAGATCAGCCGTTTGTTCCAGCGGCGCATTGCGCTGGATG
CGCTGCTCGGCGGATTGCTAGGACTGATCGGCGGTGCCCTGATCATCTGG
CTGATCAGCGGGCAATTGTCGGCGCTTGGCTCGGGTCTGGTGCAATCGGT
TGGCCTCGACTGGTGGAGCTGGTTGATAATTGCTGTCATTCCGATATTGG
GGATGTTCCTTGCCATGGTTACCGCCAAATTGACGGTCATCGGCGCCCTG
AAAAAGATATTGTAGATGACGCACGCGATTGGCGATGTGTCGGATGAACT
GTCGAGCAGGGCGACGGTCCAGATTATCGAAGCCAATCCCCAGACCCGCA
GCAGTCAGGCAGAGGTCGCTGCGAAACGATTGCGCGCAATACCGCTGATA
AAGGAGGTCCGTGTCCTGCCGCCCGAAGAGATAAAGGCGCTCATCGAGCC
ATGGCTCGGCACCCAGGATCTGGAGGATGATATACCGCTGCCGGCCCTGA
TTGATGTGAAAATGGTCCGCGCCGCCACCGACGCAGAATATCAATCGCTG
CGCAGCGCGCTTCAATCCGTCGCACCGGGCGCGCGGATCGAACCGAGCAG
CGGCTATATTGCGCCGGTATTTTCGCTGGTCCGCTCTTTTCAGTGGATTG
CCTTTGGTCTGGTCGCCCTGCTGGCTTTGGCGACCGGAGCTGCGGTTATC
ATTTCGGCGCGATCGGCGCTCAACACCCATACCGAAACCATCGCGGTGGT
GCACTTGCTCGGTGGCACGGACCAGCAGATCAGCCGTTTGTTCCAGCGGC
GCATTGCGCTGGATGCGCTGCTCGGCGGATTGCTAGGACTGATCGGCGGT
GCCCTGATCATCTGGCTGATCAGCGGGCAATTGTCGGCGCTTGGCTCGGG
TCTGGTGCAATCGGTTGGCCTCGACTGGTGGAGCTGGTTGATAATTGCTG
TCATTCCGATATTGGGGATGTTCCTTGCCATGGTTACCGCCAAATTGACG
GTCATCGGCGCCCTGAAAAAGATATTGTAG
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