mRNA_M-pyrifera_M_contig85232.19864.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85232.19864.1
Unique NamemRNA_M-pyrifera_M_contig85232.19864.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85232.19864.1 vs. uniprot
Match: A0A7J9WLM0_9ACTN (M15 family peptidase n=1 Tax=Nitriliruptorales bacterium TaxID=2497630 RepID=A0A7J9WLM0_9ACTN)

HSP 1 Score: 268 bits (684), Expect = 2.570e-86
Identity = 130/232 (56.03%), Postives = 163/232 (70.26%), Query Frame = 1
Query:   79 RPPWLGTRDLTLPDGSIATGLETPPELLDRRFATIDLLPPPDPTAGFVSSIGPLEGEMLAASTWEEGCPVEPDDLRLLTLTFWGFDDQPHTGDMIVHADVADDVVFVFARLFDARFSIEEMRVITDADLVAPNSGDGNVTSAFECRAVRGGSTFSEHAHGLAIDINPFLNPYLRGEVLLPELAAHYLPRELAAPGQITEGDVVTEAFAEIGWHWGGNWSSLVDYQHFALRNR 774
            RP WL TR L L          TPPEL DRR    DLLPPP+  A F +++ P+  ++LA STW   CPV+  DLR LT+TFWGFDD+PHTG+++VHA VA+D+  VF RL++ARF IEEMRVI   +L AP +GDGN T+AF CR   GG+ +SEHA+GLA DINPF NPY++G++++PELA+ YL REL  PG I  GD VTEAFA +GW WGG W S+ D  HF+   R
Sbjct:   67 RPDWLATRVLPLRADGFGEIQPTPPELADRRLPPPDLLPPPEGDA-FAATLEPVPDDVLARSTWSSECPVDVSDLRYLTVTFWGFDDRPHTGELLVHASVAEDLTTVFGRLYEARFPIEEMRVIARRELDAPPTGDGNNTTAFVCRPTTGGTRWSEHAYGLAADINPFHNPYVKGDLVVPELASAYLDRELERPGMIQAGDPVTEAFAAMGWGWGGAWRSVKDTMHFSHNGR 297          
BLAST of mRNA_M-pyrifera_M_contig85232.19864.1 vs. uniprot
Match: A0A2G6JRM8_9MICO (Peptidase_M15_4 domain-containing protein n=1 Tax=Micrococcales bacterium TaxID=2026762 RepID=A0A2G6JRM8_9MICO)

HSP 1 Score: 261 bits (666), Expect = 7.400e-84
Identity = 133/233 (57.08%), Postives = 164/233 (70.39%), Query Frame = 1
Query:   82 PPWLGTRDL-TLPDGSIATGLETPPELLDRRFATIDLLPPPDPTAGFVSSIGPLEGEMLAASTWEEGCPVEPDDLRLLTLTFWGFDDQPHTGDMIVHADVADDVVFVFARLFDARFSIEEMRVITDADLVAPNSGDGNVTSAFECR-AVRGGSTFSEHAHGLAIDINPFLNPYLRGEVLLPELAAHYLPRELAAPGQITEGDVVTEAFAEIGWHWGGNWSSLVDYQHFALRNR 774
            P WLG+R L T  DGS+     TPPEL+DR F T+DLLPPP     F ++I PL GE L  STW+  CPV  D LR +T++FWGFD +PHTG+MIV+  VADD+V VF  L+DARF IE+MR+ T ADL A  +GDGN T++F CR AV    T SEHA+GLA+D+NPF NPY+RG+++LPELA  Y  R     G I EGDVVT+AF +IGW WGG W+ L DYQHF+   R
Sbjct:   48 PAWLGSRALPTDADGSVPPQ-STPPELVDRNFVTVDLLPPPS-GRDFEATIEPLAGEPLERSTWDPSCPVTIDGLRYVTMSFWGFDGRPHTGEMIVNRAVADDLVSVFKTLYDARFHIEQMRISTPADLDAAPTGDGNNTTSFVCREAVGRPGTLSEHAYGLAVDVNPFHNPYVRGDLVLPELARAYTDRSSPTRGMIVEGDVVTKAFDQIGWGWGGRWTRLKDYQHFSRNGR 278          
BLAST of mRNA_M-pyrifera_M_contig85232.19864.1 vs. uniprot
Match: A0A346XX73_9ACTN (Peptidase_M15_4 domain-containing protein n=1 Tax=Euzebya pacifica TaxID=1608957 RepID=A0A346XX73_9ACTN)

HSP 1 Score: 257 bits (657), Expect = 5.820e-83
Identity = 122/232 (52.59%), Postives = 164/232 (70.69%), Query Frame = 1
Query:   79 RPPWLGTRDLTLPDGSIATGLETPPELLDRRFATIDLLPPPDPTAGFVSSIGPLEGEMLAASTWEEGCPVEPDDLRLLTLTFWGFDDQPHTGDMIVHADVADDVVFVFARLFDARFSIEEMRVITDADLVAPNSGDGNVTSAFECRAVRGGSTFSEHAHGLAIDINPFLNPYLRGEVLLPELAAHYLPRELAAPGQITEGDVVTEAFAEIGWHWGGNWSSLVDYQHFALRNR 774
            RP WL TR L +     A   +TP EL+DRR  TIDLLPPP    GFV+++  +  +++A STW E CPV  D+LR +T++FWGFDD+ HTG++IV+A  A+++V VF +L   R+ IEEMR+++ A+L  P +GDGN T+AF CR VRG ST+S+HA+GLA+DINPF+NPY RGE +LPELA  YL R+   PG + EG V   AF  +GW WGG W+SL+D+ HF+   R
Sbjct:   15 RPEWLHTRPLEIGPDGWALPQDTPAELVDRRIPTIDLLPPPTDD-GFVATVEAVPDDVVARSTWTEECPVGLDELRYVTVSFWGFDDRHHTGELIVNASWAEEIVDVFRQLHAIRYPIEEMRIVSAAELEGPPTGDGNDTTAFVCRPVRGSSTWSQHAYGLAVDINPFVNPYQRGERILPELAGAYLDRDHVRPGMLAEGHVAVAAFDALGWGWGGRWNSLIDWMHFSANGR 245          
BLAST of mRNA_M-pyrifera_M_contig85232.19864.1 vs. uniprot
Match: UPI00196B4D74 (M15 family metallopeptidase n=1 Tax=Euzebya rosea TaxID=2052804 RepID=UPI00196B4D74)

HSP 1 Score: 259 bits (661), Expect = 1.660e-82
Identity = 123/232 (53.02%), Postives = 165/232 (71.12%), Query Frame = 1
Query:   79 RPPWLGTRDLTLPDGSIATGLETPPELLDRRFATIDLLPPPDPTAGFVSSIGPLEGEMLAASTWEEGCPVEPDDLRLLTLTFWGFDDQPHTGDMIVHADVADDVVFVFARLFDARFSIEEMRVITDADLVAPNSGDGNVTSAFECRAVRGGSTFSEHAHGLAIDINPFLNPYLRGEVLLPELAAHYLPRELAAPGQITEGDVVTEAFAEIGWHWGGNWSSLVDYQHFALRNR 774
            RP WL TR L +     A   +TP EL+DRR  TIDLLPPP P   FV+S+  +  +++A STW E CPV  D+LR +T++FWGFDD+ HTG++IV+A  A+++V VF +L   R+ IEEMR+++ A+L  P +GDGN T+AF CR VRG S++S+HA+GLA+DINPF+NPY RGE +LPELA  YL R+   PG + EG V  EAF  +GW WGG W+SL+D+ HF+   R
Sbjct:   91 RPEWLHTRPLEIGPDGWALPQDTPAELVDRRIPTIDLLPPP-PDDDFVASVQEVPADVVARSTWTEECPVGLDELRYVTVSFWGFDDRHHTGELIVNASWAEELVDVFRQLHAIRYPIEEMRIVSAAELEGPPTGDGNDTTAFVCRPVRGSSSWSQHAYGLAVDINPFVNPYQRGERILPELAGAYLDRDHVRPGMLAEGHVAVEAFDALGWGWGGRWNSLIDWMHFSANGR 321          
BLAST of mRNA_M-pyrifera_M_contig85232.19864.1 vs. uniprot
Match: A0A6L5F579_9ACTN (M15 family peptidase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L5F579_9ACTN)

HSP 1 Score: 259 bits (661), Expect = 3.830e-82
Identity = 133/235 (56.60%), Postives = 164/235 (69.79%), Query Frame = 1
Query:   64 VTLPTRPPWLGTRDLTLPDGSIATGLETPPELLDRRFATIDLLPPPDPTAGFVSSIGPLEGEMLAASTWEEGCPVEPDDLRLLTLTFWGFDDQPHTGDMIVHADVADDVVFVFARLFDARFSIEEMRVITDADLVAPNSGDGNVTSAFECRAVRG-GSTFSEHAHGLAIDINPFLNPYLRGEVLLPELAAHYLPRELAAPGQITEGDVVTEAFAEIGWHWGGNWSSLVDYQHFAL 765
            VTLP  P WLGTR L   +  +     TPPEL DRRF T D+LPPP P   F S+I  +  ++L  STW E CP+  +DL  +T+TF GFD + HTG+++V   VA+D+VFVF  LF+A F IEEMR+ +  DL AP +GDGNVTSAF CR V G  S +S+HA G AIDINPF NPY++ EV+LPELA  Y+ R+   PG I +GDVV EAFAEIGW WGG W+SL DYQHF+L
Sbjct:  114 VTLP--PDWLGTRVLPTDENGLGEVQPTPPELQDRRFTTEDVLPPP-PDDSFHSTIDEVHDDVLERSTWVEDCPITAEDLAYMTVTFVGFDARHHTGELLVDMAVAEDLVFVFEMLFEAEFPIEEMRITSPEDLDAPPTGDGNVTSAFACRPVVGQDSGWSQHALGTAIDINPFHNPYVKDEVVLPELATAYVDRDRGLPGMIEDGDVVAEAFAEIGWTWGGTWNSLKDYQHFSL 345          
BLAST of mRNA_M-pyrifera_M_contig85232.19864.1 vs. uniprot
Match: A0A838HTH8_9ACTN (M15 family metallopeptidase n=1 Tax=Euzebyaceae bacterium TaxID=2740542 RepID=A0A838HTH8_9ACTN)

HSP 1 Score: 256 bits (655), Expect = 4.160e-82
Identity = 120/233 (51.50%), Postives = 160/233 (68.67%), Query Frame = 1
Query:   76 TRPPWLGTRDLTLPDGSIATGLETPPELLDRRFATIDLLPPPDPTAGFVSSIGPLEGEMLAASTWEEGCPVEPDDLRLLTLTFWGFDDQPHTGDMIVHADVADDVVFVFARLFDARFSIEEMRVITDADLVAPNSGDGNVTSAFECRAVRGGSTFSEHAHGLAIDINPFLNPYLRGEVLLPELAAHYLPRELAAPGQITEGDVVTEAFAEIGWHWGGNWSSLVDYQHFALRNR 774
            T P WLGTR L L          TPPEL DRR  T+D+LPPP+    FV+++ P+  E+   STW   CPV  D+LR +T++FWGFD +PHTG+++V+ +VADD+V VF +LF ARF IE+MRV    +L AP +GDGN T+AF CRA RG +++S+HA+GLA+D+NPF NPY +G+V+ PELA+ Y  R    PG +  GD V +AF+ IGW WGG W SL D+ HF+   R
Sbjct:   53 TPPAWLGTRVLPLRPDGFGEIQPTPPELRDRRLVTVDVLPPPE-GGDFVATVEPVPAEVADRSTWSVRCPVGLDELRYVTVSFWGFDHRPHTGELLVNTEVADDLVVVFRQLFQARFPIEQMRVTAAEELDAPPTGDGNNTTAFVCRATRGATSWSQHAYGLAVDVNPFQNPYAKGDVVAPELASAYTDRTWCRPGMLEAGDPVVKAFSAIGWGWGGTWESLTDWMHFSRNGR 284          
BLAST of mRNA_M-pyrifera_M_contig85232.19864.1 vs. uniprot
Match: UPI001C1F6E4C (M15 family metallopeptidase n=1 Tax=Euzebya pacifica TaxID=1608957 RepID=UPI001C1F6E4C)

HSP 1 Score: 257 bits (657), Expect = 9.130e-82
Identity = 122/232 (52.59%), Postives = 164/232 (70.69%), Query Frame = 1
Query:   79 RPPWLGTRDLTLPDGSIATGLETPPELLDRRFATIDLLPPPDPTAGFVSSIGPLEGEMLAASTWEEGCPVEPDDLRLLTLTFWGFDDQPHTGDMIVHADVADDVVFVFARLFDARFSIEEMRVITDADLVAPNSGDGNVTSAFECRAVRGGSTFSEHAHGLAIDINPFLNPYLRGEVLLPELAAHYLPRELAAPGQITEGDVVTEAFAEIGWHWGGNWSSLVDYQHFALRNR 774
            RP WL TR L +     A   +TP EL+DRR  TIDLLPPP    GFV+++  +  +++A STW E CPV  D+LR +T++FWGFDD+ HTG++IV+A  A+++V VF +L   R+ IEEMR+++ A+L  P +GDGN T+AF CR VRG ST+S+HA+GLA+DINPF+NPY RGE +LPELA  YL R+   PG + EG V   AF  +GW WGG W+SL+D+ HF+   R
Sbjct:  101 RPEWLHTRPLEIGPDGWALPQDTPAELVDRRIPTIDLLPPPTDD-GFVATVEAVPDDVVARSTWTEECPVGLDELRYVTVSFWGFDDRHHTGELIVNASWAEEIVDVFRQLHAIRYPIEEMRIVSAAELEGPPTGDGNDTTAFVCRPVRGSSTWSQHAYGLAVDINPFVNPYQRGERILPELAGAYLDRDHVRPGMLAEGHVAVAAFDALGWGWGGRWNSLIDWMHFSANGR 331          
BLAST of mRNA_M-pyrifera_M_contig85232.19864.1 vs. uniprot
Match: UPI0004181316 (M15 family metallopeptidase n=1 Tax=Nocardioides insulae TaxID=394734 RepID=UPI0004181316)

HSP 1 Score: 254 bits (649), Expect = 8.180e-81
Identity = 128/234 (54.70%), Postives = 157/234 (67.09%), Query Frame = 1
Query:   76 TRPPWLGTRDLTLPDGSIATGLETPPELLDRRFATIDLLPPPDPTAGFVSSIG-PLEGEMLAASTWEEGCPVEPDDLRLLTLTFWGFDDQPHTGDMIVHADVADDVVFVFARLFDARFSIEEMRVITDADLVAPNSGDGNVTSAFECRAVRGGSTFSEHAHGLAIDINPFLNPYLRGEVLLPELAAHYLPRELAAPGQITEGDVVTEAFAEIGWHWGGNWSSLVDYQHFALRNR 774
            T P WLGTR L            TPPEL  R F   D LP   P  GF S +  P   +++A STW  GCPV   +L  + LTFWGFDD  HTG+++V+A VADD+V VF  L+DARF IEEMR+ T AD  A  +GDGN T+AF CR VRG +T+S+HA+GLA+D+NPF NPY+ G+V+LPELA+ Y+ R   APG I +GD VTEAFA IGW WGG+W SL DYQHF+   R
Sbjct:   80 TPPDWLGTRVLPTTAAGYGEIRRTPPELRTRAFTLPDRLPML-PGDGFASRVAAPAPAKVIARSTWARGCPVGRGELAWIRLTFWGFDDARHTGELLVNARVADDLVSVFRELYDARFPIEEMRIPTQADQEAEPTGDGNDTAAFACRPVRGETTYSQHAYGLAVDVNPFQNPYVNGDVVLPELASAYIDRSRRAPGMIHDGDAVTEAFAGIGWGWGGSWQSLKDYQHFSENGR 312          
BLAST of mRNA_M-pyrifera_M_contig85232.19864.1 vs. uniprot
Match: A0A7V8X295_9ACTN (M15 family metallopeptidase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8X295_9ACTN)

HSP 1 Score: 250 bits (638), Expect = 7.200e-80
Identity = 128/232 (55.17%), Postives = 159/232 (68.53%), Query Frame = 1
Query:   76 TRPPWL-GTRDLTLPDGSIATGLETPPELLDRRFATIDLLPPPDPTAGFVSSIGPLEGEMLA--ASTWEEGCPVEPDDLRLLTLTFWGFDDQPHTGDMIVHADVADDVVFVFARLFDARFSIEEMRVITDADLVAPNSGDGNVTSAFECRAVRGGSTFSEHAHGLAIDINPFLNPYLRGEVLLPELAAHYLPRELAAPGQITEGDVVTEAFAEIGWHWGGNWSSLVDYQHFA 762
            T P W+ G   L L        L TPPEL+DRR  T D+LPPP  + GF SSI P++  + A    TW+EGCPV  +DLR L ++F GFD   HTG+++V A  A+ VV VF +LFDA F +EEMR+ITDADL AP +GDG+ ++AF CRA+RGG+ FS HA GLAID+NPF NPY RG+++LPELA+ Y+ R    PG I EGDVV  AF  IGW WGG W S VD QHF+
Sbjct:   26 TAPVWIVGATPLPLRPDGFGEVLPTPPELVDRRLPTRDVLPPPA-SGGFESSIVPIDDAVRARMGGTWQEGCPVAIEDLRYLNVSFRGFDGLAHTGELVVAASEAEGVVSVFRQLFDAGFPLEEMRLITDADLAAPATGDGSNSAAFVCRAIRGGTRFSAHASGLAIDVNPFHNPYTRGDLVLPELASAYVDRTNVRPGMIFEGDVVVAAFESIGWSWGGRWDSPVDRQHFS 256          
BLAST of mRNA_M-pyrifera_M_contig85232.19864.1 vs. uniprot
Match: A0A838E4I7_9ACTN (M15 family metallopeptidase n=1 Tax=Euzebyales bacterium TaxID=2740540 RepID=A0A838E4I7_9ACTN)

HSP 1 Score: 251 bits (641), Expect = 7.770e-80
Identity = 124/222 (55.86%), Postives = 157/222 (70.72%), Query Frame = 1
Query:  115 PDGSIATGLETPPELLDRRFA--TIDLLPPPDPTAGFVSSIGPLEGEMLAASTWEEGCPVEPDDLRLLTLTFWGFDDQPHTGDMIVHADVADDVVFVFARLFDARFSIEEMRVITDADLVAPNSGDGNVTSAFECRAVRGGSTFSEHAHGLAIDINPFLNPYLRGEVLLPELAAHYLPRELAAPGQITEGDVVTEAFAEIGWHWGGNWSSLVDYQHFALRNR 774
            PDG     L+TPPEL DRR      + LPPPD  A F +++ P+  ++ A STW  GCPV  D+LR +T+TFWGFDD+PHTG+++V+A VADD+V VF RL  ARF IEEMRVI   +L  P +GDGNVT+AF CR  RG +T+S+HA GLA+DINPF NPY + +++LPELA+ YL R+   PG I  G VVT+AFA IGW WGG WS L D+ HF+   R
Sbjct:   76 PDG-FGEVLDTPPELTDRRLPPPAPEPLPPPDGEA-FAATVEPVPDDVAARSTWSTGCPVALDELRYVTVTFWGFDDRPHTGELLVNAGVADDLVEVFRRLHTARFPIEEMRVIAADELALPPTGDGNVTTAFVCRPARGTTTWSQHAFGLAVDINPFHNPYAKNDLVLPELASAYLDRDRQLPGMIAPGGVVTDAFAAIGWGWGGEWSGLSDWMHFSATGR 295          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85232.19864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J9WLM0_9ACTN2.570e-8656.03M15 family peptidase n=1 Tax=Nitriliruptorales bac... [more]
A0A2G6JRM8_9MICO7.400e-8457.08Peptidase_M15_4 domain-containing protein n=1 Tax=... [more]
A0A346XX73_9ACTN5.820e-8352.59Peptidase_M15_4 domain-containing protein n=1 Tax=... [more]
UPI00196B4D741.660e-8253.02M15 family metallopeptidase n=1 Tax=Euzebya rosea ... [more]
A0A6L5F579_9ACTN3.830e-8256.60M15 family peptidase n=1 Tax=Acidimicrobiia bacter... [more]
A0A838HTH8_9ACTN4.160e-8251.50M15 family metallopeptidase n=1 Tax=Euzebyaceae ba... [more]
UPI001C1F6E4C9.130e-8252.59M15 family metallopeptidase n=1 Tax=Euzebya pacifi... [more]
UPI00041813168.180e-8154.70M15 family metallopeptidase n=1 Tax=Nocardioides i... [more]
A0A7V8X295_9ACTN7.200e-8055.17M15 family metallopeptidase n=1 Tax=Acidimicrobiia... [more]
A0A838E4I7_9ACTN7.770e-8055.86M15 family metallopeptidase n=1 Tax=Euzebyales bac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85232contigM-pyrifera_M_contig85232:2..778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score250.8
Seed ortholog evalue7.2e-64
Seed eggNOG ortholog1122609.AUGT01000008_gene2914
KEGG koko:K07282
Hectar predicted targeting categoryother localisation
EggNOG free text desc.D-alanyl-D-alanine carboxypeptidase
EggNOG OGs2GP72@201174,4DQKR@85009,COG2843@1,COG2843@2
COG Functional cat.M
Best tax levelPropionibacteriales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size777
Cds size777
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816760.7904723-CDS-M-pyrifera_M_contig85232:1..7781622816760.7904723-CDS-M-pyrifera_M_contig85232:1..778Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85232 2..778 +
1692278162.5337532-CDS-M-pyrifera_M_contig85232:1..7781692278162.5337532-CDS-M-pyrifera_M_contig85232:1..778Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85232 2..778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85232.19864.1prot_M-pyrifera_M_contig85232.19864.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85232 2..778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85232.19864.1

>prot_M-pyrifera_M_contig85232.19864.1 ID=prot_M-pyrifera_M_contig85232.19864.1|Name=mRNA_M-pyrifera_M_contig85232.19864.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=259bp
PPTTLAPTTLPSTTLPSTTLEVTLPTRPPWLGTRDLTLPDGSIATGLETP
PELLDRRFATIDLLPPPDPTAGFVSSIGPLEGEMLAASTWEEGCPVEPDD
LRLLTLTFWGFDDQPHTGDMIVHADVADDVVFVFARLFDARFSIEEMRVI
TDADLVAPNSGDGNVTSAFECRAVRGGSTFSEHAHGLAIDINPFLNPYLR
GEVLLPELAAHYLPRELAAPGQITEGDVVTEAFAEIGWHWGGNWSSLVDY
QHFALRNR*
back to top

mRNA from alignment at M-pyrifera_M_contig85232:2..778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85232.19864.1 ID=mRNA_M-pyrifera_M_contig85232.19864.1|Name=mRNA_M-pyrifera_M_contig85232.19864.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=777bp|location=Sequence derived from alignment at M-pyrifera_M_contig85232:2..778+ (Macrocystis pyrifera P11B4 male)
CCCCCGACCACGCTTGCCCCGACCACCCTCCCCTCGACCACGCTCCCCTC GACCACGCTCGAGGTGACGCTGCCGACCCGGCCCCCGTGGTTGGGGACCC GAGACCTCACACTGCCCGACGGATCGATCGCCACCGGACTCGAGACGCCC CCCGAACTCCTCGACCGTCGCTTCGCCACGATCGACCTCCTGCCCCCACC GGATCCGACCGCCGGGTTCGTGTCGTCGATCGGGCCATTGGAGGGTGAGA TGCTCGCCGCCTCGACCTGGGAGGAGGGGTGCCCGGTCGAGCCGGACGAC CTTCGCCTCCTGACCCTCACGTTCTGGGGCTTCGACGACCAACCGCACAC CGGCGACATGATCGTGCATGCCGACGTCGCCGACGACGTGGTCTTCGTCT TCGCCCGCCTCTTCGACGCTCGGTTCTCCATCGAGGAGATGCGAGTCATC ACCGACGCCGACCTCGTCGCCCCGAACAGTGGCGACGGCAACGTGACCTC GGCCTTCGAGTGTCGTGCCGTCCGCGGCGGTTCGACCTTCTCCGAACACG CCCATGGTCTCGCCATCGACATCAATCCCTTCCTCAACCCCTACCTGCGT GGCGAGGTGCTCCTACCGGAACTCGCCGCGCACTACCTGCCGCGTGAACT CGCAGCTCCCGGCCAGATCACCGAGGGCGATGTGGTCACCGAGGCCTTCG CCGAGATCGGTTGGCATTGGGGTGGGAACTGGTCCTCGCTGGTCGACTAC CAGCACTTCGCTCTCCGCAATCGCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85232:2..778+

>mRNA_M-pyrifera_M_contig85232.19864.1 ID=mRNA_M-pyrifera_M_contig85232.19864.1|Name=mRNA_M-pyrifera_M_contig85232.19864.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1554bp|location=Sequence derived from alignment at M-pyrifera_M_contig85232:2..778+ (Macrocystis pyrifera P11B4 male)
CCCCCGACCACGCTTGCCCCGACCACCCTCCCCTCGACCACGCTCCCCTC
GACCACGCTCGAGGTGACGCTGCCGACCCGGCCCCCGTGGTTGGGGACCC
GAGACCTCACACTGCCCGACGGATCGATCGCCACCGGACTCGAGACGCCC
CCCGAACTCCTCGACCGTCGCTTCGCCACGATCGACCTCCTGCCCCCACC
GGATCCGACCGCCGGGTTCGTGTCGTCGATCGGGCCATTGGAGGGTGAGA
TGCTCGCCGCCTCGACCTGGGAGGAGGGGTGCCCGGTCGAGCCGGACGAC
CTTCGCCTCCTGACCCTCACGTTCTGGGGCTTCGACGACCAACCGCACAC
CGGCGACATGATCGTGCATGCCGACGTCGCCGACGACGTGGTCTTCGTCT
TCGCCCGCCTCTTCGACGCTCGGTTCTCCATCGAGGAGATGCGAGTCATC
ACCGACGCCGACCTCGTCGCCCCGAACAGTGGCGACGGCAACGTGACCTC
GGCCTTCGAGTGTCGTGCCGTCCGCGGCGGTTCGACCTTCTCCGAACACG
CCCATGGTCTCGCCATCGACATCAATCCCTTCCTCAACCCCTACCTGCGT
GGCGAGGTGCTCCTACCGGAACTCGCCGCGCACTACCTGCCGCGTGAACT
CGCAGCTCCCGGCCAGATCACCGAGGGCGATGTGGTCACCGAGGCCTTCG
CCGAGATCGGTTGGCATTGGGGTGGGAACTGGTCCTCGCTGGTCGACTAC
CAGCACTTCGCTCTCCGCAATCGCTGACCCCCGACCACGCTTGCCCCGAC
CACCCTCCCCTCGACCACGCTCCCCTCGACCACGCTCGAGGTGACGCTGC
CGACCCGGCCCCCGTGGTTGGGGACCCGAGACCTCACACTGCCCGACGGA
TCGATCGCCACCGGACTCGAGACGCCCCCCGAACTCCTCGACCGTCGCTT
CGCCACGATCGACCTCCTGCCCCCACCGGATCCGACCGCCGGGTTCGTGT
CGTCGATCGGGCCATTGGAGGGTGAGATGCTCGCCGCCTCGACCTGGGAG
GAGGGGTGCCCGGTCGAGCCGGACGACCTTCGCCTCCTGACCCTCACGTT
CTGGGGCTTCGACGACCAACCGCACACCGGCGACATGATCGTGCATGCCG
ACGTCGCCGACGACGTGGTCTTCGTCTTCGCCCGCCTCTTCGACGCTCGG
TTCTCCATCGAGGAGATGCGAGTCATCACCGACGCCGACCTCGTCGCCCC
GAACAGTGGCGACGGCAACGTGACCTCGGCCTTCGAGTGTCGTGCCGTCC
GCGGCGGTTCGACCTTCTCCGAACACGCCCATGGTCTCGCCATCGACATC
AATCCCTTCCTCAACCCCTACCTGCGTGGCGAGGTGCTCCTACCGGAACT
CGCCGCGCACTACCTGCCGCGTGAACTCGCAGCTCCCGGCCAGATCACCG
AGGGCGATGTGGTCACCGAGGCCTTCGCCGAGATCGGTTGGCATTGGGGT
GGGAACTGGTCCTCGCTGGTCGACTACCAGCACTTCGCTCTCCGCAATCG
CTGA
back to top