mRNA_M-pyrifera_M_contig8521.19859.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8521.19859.1
Unique NamemRNA_M-pyrifera_M_contig8521.19859.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8521.19859.1 vs. uniprot
Match: D7FNQ1_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ1_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 1.250e-72
Identity = 137/211 (64.93%), Postives = 143/211 (67.77%), Query Frame = 1 
Query:    1 AETWTPLMLACAEGDVTLVRVIIEVGGARASASVGTKVLASSTPLHVASRYGHAGAAAVLLELGAVVDVRDTIG--AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMAEMAGFGDAAVLLRKRAVRGEAG--AVKRR-ALVSWLEALDCEEFLGRFLRAGYDDLPFMASHGLTEADLDCVGVPTEKLGLRKKLLAMHGVEQFL 618
            AETWTPL LACAEG V LVR I+E+GGAR S S  TKVLASS+PLHVASRYGHAG AAVLLELGAVVD RDT G                                       DMAEMAGF DAA LLR RA+ GE G  AV+RR  L SWL  L C EFLGRFLRAGYDDL FMAS GLTEADLDCVGVP +KLGLRKKLLAMHGVE FL
Sbjct:   38 AETWTPLALACAEGRVELVRAIVEIGGARPSFSAQTKVLASSSPLHVASRYGHAGVAAVLLELGAVVDARDTFGFTPLCYAAGNGHLKTIEVLLEAGADASSSFEAPYAAKALDMAEMAGFDDAATLLRSRALAGEDGGEAVRRRKTLASWLGVLGCREFLGRFLRAGYDDLQFMASQGLTEADLDCVGVPGDKLGLRKKLLAMHGVEGFL 248
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BLAST of mRNA_M-pyrifera_M_contig8521.19859.1 vs. uniprot
Match: A0A835YT05_9STRA (A designed full consensus ankyrin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT05_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.520e-24
Identity = 78/213 (36.62%), Postives = 100/213 (46.95%), Query Frame = 1 
Query:    4 ETWTPLMLACAEGDVTLVRVIIEVGGARASASVGTKVLASSTPLHVASRYGHAG--AAAVLLELGAVVDVRDTIG-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMAEMAGFGDAAVLLRKRAVRGEAGAVKRRALVSWLEALDCEEFLGRFLRAGYDDLPFMASHGLTEADLDCVGVPTEKLGLRKKLLAMHGVEQFLDRAER 633
            E WTPL LA AEG+   V  +++  GAR  +   +KVL   TPLHVA+RYG +    AA+L   GA     D+ G                                      D A +      A LL   A R  A    R  L +WL +L C  +   F  AGYDDL F+A+HGL+  DLDC+GVP  +LGLR+KL A+H + Q L R  R
Sbjct:   55 EQWTPLHLAVAEGNHAAVAFLLQ-HGARPDSIATSKVLPGHTPLHVAARYGSSPDIVAALLAAPGADAGAADSHGMTPLHYAACSGHADCAQQLLSAGASALAPSAHGALTPLDAARLCRHAAVAALLEAAAAREGA----RAPLAAWLRSLGCGAYARAFAAAGYDDLAFIAAHGLSAEDLDCIGVPMAQLGLRRKLTALHNIAQHLRRGRR 262
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BLAST of mRNA_M-pyrifera_M_contig8521.19859.1 vs. uniprot
Match: A0A482UJW8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UJW8_9ARCH)

HSP 1 Score: 70.9 bits (172), Expect = 2.790e-12
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  460 EFLGRFLRAGYDDLPFMASHGLTEADLDCVGVPTEKLGLRKKLLAMHGVEQF 615
            E+L RFL AGYD LPF+ +HGL++ DLDC+GVP  K+GLR+K+  +HG+++F
Sbjct:   14 EYLQRFLDAGYD-LPFIHTHGLSDVDLDCIGVPVNKMGLRRKMSKLHGLDRF 64
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BLAST of mRNA_M-pyrifera_M_contig8521.19859.1 vs. uniprot
Match: A0A812P6A8_SYMMI (ANK3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812P6A8_SYMMI)

HSP 1 Score: 72.4 bits (176), Expect = 7.420e-12
Identity = 47/165 (28.48%), Postives = 77/165 (46.67%), Query Frame = 1 
Query:  127 TPLHVASRYGHAGAAAVLLELGAVVDVRDTIGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMAEMAGFGDAA-VLLRKRAVRGEAGAVKRRALVSWLEALDCEEFLGRFLRAGYDDLPFMASHGLTEADLDCVGVPTEKLGLRKKLLAMHGVEQFL 618
            TP+H+ + YGH     V+L      D++D  G                                      +A+  G+ + A +L  K ++  +  A + R    WL +L    ++  F +AGYD L F+A+HGL++ D DCVG+PT ++GLR+KL  +H +E F+
Sbjct:    2 TPVHICALYGHVDIL-VILVTATNADIQDQWGFTALHYAVSNRKIQAVQFLLDFGANASLTSSAGSTPLQIAQELGYHEIADILASKVSITEDPAAPQFR---EWLRSLGAGAYISSFFKAGYD-LAFVAAHGLSDEDCDCVGIPTSQMGLRRKLKTLHKIELFV 161
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8521.19859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNQ1_ECTSI1.250e-7264.93Chain A, Crystal Structure Of A Designed Full Cons... [more]
A0A835YT05_9STRA2.520e-2436.62A designed full consensus ankyrin n=1 Tax=Tribonem... [more]
A0A482UJW8_9ARCH2.790e-1257.69Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A812P6A8_SYMMI7.420e-1228.48ANK3 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8521contigM-pyrifera_M_contig8521:4503..5261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.9
Seed ortholog evalue1.3e-54
Seed eggNOG ortholog2880.D7FNQ1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_004680.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size759
Cds size738
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816760.5573559-UTR-M-pyrifera_M_contig8521:4502..45231622816760.5573559-UTR-M-pyrifera_M_contig8521:4502..4523Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8521 4503..4523 +
1692278162.3936162-UTR-M-pyrifera_M_contig8521:4502..45231692278162.3936162-UTR-M-pyrifera_M_contig8521:4502..4523Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8521 4503..4523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816760.574595-CDS-M-pyrifera_M_contig8521:4523..52611622816760.574595-CDS-M-pyrifera_M_contig8521:4523..5261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8521 4524..5261 +
1692278162.407016-CDS-M-pyrifera_M_contig8521:4523..52611692278162.407016-CDS-M-pyrifera_M_contig8521:4523..5261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8521 4524..5261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8521.19859.1prot_M-pyrifera_M_contig8521.19859.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8521 4524..5261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8521.19859.1

>prot_M-pyrifera_M_contig8521.19859.1 ID=prot_M-pyrifera_M_contig8521.19859.1|Name=mRNA_M-pyrifera_M_contig8521.19859.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=246bp
MLACAEGDVTLVRVIIEVGGARASASVGTKVLASSTPLHVASRYGHAGAA
AVLLELGAVVDVRDTIGATPLQYAAGNGHLKTMEVLLDAGAGTSAESPGG
ATALDMAEMAGFGDAAVLLRKRAVRGEAGAVKRRALVSWLEALDCEEFLG
RFLRAGYDDLPFMASHGLTEADLDCVGVPTEKLGLRKKLLAMHGVEQFLD
RAEREDGRDSSGSNTDEESTATITNSNSGDSSSSASDGDTSEVEEE
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mRNA from alignment at M-pyrifera_M_contig8521:4503..5261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8521.19859.1 ID=mRNA_M-pyrifera_M_contig8521.19859.1|Name=mRNA_M-pyrifera_M_contig8521.19859.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=759bp|location=Sequence derived from alignment at M-pyrifera_M_contig8521:4503..5261+ (Macrocystis pyrifera P11B4 male)
GCAGAAACGTGGACTCCGTTAATGCTGGCATGCGCTGAGGGCGACGTTAC
CCTGGTGCGCGTTATCATCGAGGTAGGAGGTGCGCGAGCGTCAGCTAGCG
TGGGCACCAAAGTCTTGGCAAGCTCGACACCCTTGCACGTCGCCTCCCGC
TACGGCCACGCCGGGGCGGCAGCAGTCCTCCTGGAACTCGGCGCGGTGGT
GGACGTCCGGGATACGATAGGCGCGACACCACTGCAGTACGCCGCGGGAA
ACGGTCATCTGAAAACGATGGAGGTTTTGCTCGACGCGGGGGCGGGGACG
TCAGCGGAGAGCCCGGGGGGGGCGACAGCGTTGGACATGGCGGAGATGGC
GGGCTTCGGCGACGCGGCGGTGCTGCTGAGAAAGCGAGCCGTTAGGGGAG
AGGCCGGGGCGGTGAAAAGGAGAGCCCTGGTCTCATGGCTCGAGGCACTC
GACTGCGAAGAATTCCTCGGGCGGTTCTTGAGGGCCGGGTACGATGACCT
GCCCTTTATGGCTTCGCACGGGCTGACCGAGGCGGACTTGGATTGTGTCG
GGGTGCCCACGGAGAAATTGGGTCTCAGGAAGAAACTGTTGGCCATGCAT
GGCGTGGAGCAGTTCTTGGACCGCGCGGAGAGAGAGGACGGGCGGGACAG
CAGCGGCAGCAACACCGACGAAGAATCTACGGCGACGATTACTAACAGCA
ACAGCGGGGACAGTAGTAGTAGTGCAAGCGATGGTGACACATCAGAAGTG
GAGGAGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8521:4503..5261+

>mRNA_M-pyrifera_M_contig8521.19859.1 ID=mRNA_M-pyrifera_M_contig8521.19859.1|Name=mRNA_M-pyrifera_M_contig8521.19859.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1476bp|location=Sequence derived from alignment at M-pyrifera_M_contig8521:4503..5261+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCATGCGCTGAGGGCGACGTTACCCTGGTGCGCGTTATCATCGA
GGTAGGAGGTGCGCGAGCGTCAGCTAGCGTGGGCACCAAAGTCTTGGCAA
GCTCGACACCCTTGCACGTCGCCTCCCGCTACGGCCACGCCGGGGCGGCA
GCAGTCCTCCTGGAACTCGGCGCGGTGGTGGACGTCCGGGATACGATAGG
CGCGACACCACTGCAGTACGCCGCGGGAAACGGTCATCTGAAAACGATGG
AGGTTTTGCTCGACGCGGGGGCGGGGACGTCAGCGGAGAGCCCGGGGGGG
GCGACAGCGTTGGACATGGCGGAGATGGCGGGCTTCGGCGACGCGGCGGT
GCTGCTGAGAAAGCGAGCCGTTAGGGGAGAGGCCGGGGCGGTGAAAAGGA
GAGCCCTGGTCTCATGGCTCGAGGCACTCGACTGCGAAGAATTCCTCGGG
CGGTTCTTGAGGGCCGGGTACGATGACCTGCCCTTTATGGCTTCGCACGG
GCTGACCGAGGCGGACTTGGATTGTGTCGGGGTGCCCACGGAGAAATTGG
GTCTCAGGAAGAAACTGTTGGCCATGCATGGCGTGGAGCAGTTCTTGGAC
CGCGCGGAGAGAGAGGACGGGCGGGACAGCAGCGGCAGCAACACCGACGA
AGAATCTACGGCGACGATTACTAACAGCAACAGCGGGGACAGTAGTAGTA
GTGCAAGCGATGGTGACACATCAGAAGTGGAGGAGGAAATGCTGGCATGC
GCTGAGGGCGACGTTACCCTGGTGCGCGTTATCATCGAGGTAGGAGGTGC
GCGAGCGTCAGCTAGCGTGGGCACCAAAGTCTTGGCAAGCTCGACACCCT
TGCACGTCGCCTCCCGCTACGGCCACGCCGGGGCGGCAGCAGTCCTCCTG
GAACTCGGCGCGGTGGTGGACGTCCGGGATACGATAGGCGCGACACCACT
GCAGTACGCCGCGGGAAACGGTCATCTGAAAACGATGGAGGTTTTGCTCG
ACGCGGGGGCGGGGACGTCAGCGGAGAGCCCGGGGGGGGCGACAGCGTTG
GACATGGCGGAGATGGCGGGCTTCGGCGACGCGGCGGTGCTGCTGAGAAA
GCGAGCCGTTAGGGGAGAGGCCGGGGCGGTGAAAAGGAGAGCCCTGGTCT
CATGGCTCGAGGCACTCGACTGCGAAGAATTCCTCGGGCGGTTCTTGAGG
GCCGGGTACGATGACCTGCCCTTTATGGCTTCGCACGGGCTGACCGAGGC
GGACTTGGATTGTGTCGGGGTGCCCACGGAGAAATTGGGTCTCAGGAAGA
AACTGTTGGCCATGCATGGCGTGGAGCAGTTCTTGGACCGCGCGGAGAGA
GAGGACGGGCGGGACAGCAGCGGCAGCAACACCGACGAAGAATCTACGGC
GACGATTACTAACAGCAACAGCGGGGACAGTAGTAGTAGTGCAAGCGATG
GTGACACATCAGAAGTGGAGGAGGAA
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