mRNA_M-pyrifera_M_contig85170.19852.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85170.19852.1
Unique NamemRNA_M-pyrifera_M_contig85170.19852.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85170.19852.1 vs. uniprot
Match: UPI001C280245 (GDSL esterase/lipase At5g62930-like isoform X3 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C280245)

HSP 1 Score: 64.3 bits (155), Expect = 3.790e-12
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   31 RRTAVLFGDSITQQSFAIGGWGSIVADTYSRKVDVLNRGY 150
            R   VLFGDSITQQSF  GGWG+ VADTYSRKVDV+ RGY
Sbjct:    2 RPQIVLFGDSITQQSFRSGGWGASVADTYSRKVDVVLRGY 41
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BLAST of mRNA_M-pyrifera_M_contig85170.19852.1 vs. uniprot
Match: UPI001C253732 (GDSL esterase/lipase At5g62930-like isoform X1 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C253732)

HSP 1 Score: 64.3 bits (155), Expect = 5.190e-12
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   31 RRTAVLFGDSITQQSFAIGGWGSIVADTYSRKVDVLNRGY 150
            R   VLFGDSITQQSF  GGWG+ VADTYSRKVDV+ RGY
Sbjct:    2 RPQIVLFGDSITQQSFRSGGWGASVADTYSRKVDVVLRGY 41
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BLAST of mRNA_M-pyrifera_M_contig85170.19852.1 vs. uniprot
Match: A0A6J1JV25_CUCMA (GDSL esterase/lipase At5g62930-like n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JV25_CUCMA)

HSP 1 Score: 67.0 bits (162), Expect = 7.150e-12
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 SGEHTSFRRTAVLFGDSITQQSFAIGGWGSIVADTYSRKVDVLNRGY 150
            +GE  + R   VLFGDS+T+QSF+ GGWG+ +ADTYSRK DVL RGY
Sbjct:   30 NGEEQTMRPEIVLFGDSLTEQSFSAGGWGAALADTYSRKADVLVRGY 76
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BLAST of mRNA_M-pyrifera_M_contig85170.19852.1 vs. uniprot
Match: A0A484N2X1_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N2X1_9ASTE)

HSP 1 Score: 63.2 bits (152), Expect = 8.260e-12
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   31 RRTAVLFGDSITQQSFAIGGWGSIVADTYSRKVDVLNRGY 150
            R   VLFGDSIT+QSF  GGWGS +AD YSRK D+LNRGY
Sbjct:    3 RPEIVLFGDSITEQSFRSGGWGSSLADYYSRKADILNRGY 42
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BLAST of mRNA_M-pyrifera_M_contig85170.19852.1 vs. uniprot
Match: A0A3Q7HUH7_SOLLC (SGNH_hydro domain-containing protein n=3 Tax=Solanum subgen. Lycopersicon TaxID=49274 RepID=A0A3Q7HUH7_SOLLC)

HSP 1 Score: 65.9 bits (159), Expect = 1.350e-11
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   31 RRTAVLFGDSITQQSFAIGGWGSIVADTYSRKVDVLNRGY 150
            R   V+FGDSITQQSF +GGWG+ +ADTY+RK D+LNRGY
Sbjct:    2 RPQIVIFGDSITQQSFKLGGWGAALADTYARKADILNRGY 41
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BLAST of mRNA_M-pyrifera_M_contig85170.19852.1 vs. uniprot
Match: A0A7N0ZYM2_KALFE (SGNH_hydro domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0ZYM2_KALFE)

HSP 1 Score: 65.9 bits (159), Expect = 1.620e-11
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   31 RRTAVLFGDSITQQSFAIGGWGSIVADTYSRKVDVLNRGY 150
            R   VLFGDSIT+QSF  GGWG+ +AD+YSRKVDVLNRGY
Sbjct:    3 RPQVVLFGDSITEQSFRSGGWGAALADSYSRKVDVLNRGY 42
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BLAST of mRNA_M-pyrifera_M_contig85170.19852.1 vs. uniprot
Match: A0A2I4EPG8_JUGRE (GDSL esterase/lipase At5g62930 isoform X1 n=7 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4EPG8_JUGRE)

HSP 1 Score: 65.5 bits (158), Expect = 1.930e-11
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   31 RRTAVLFGDSITQQSFAIGGWGSIVADTYSRKVDVLNRGY 150
            R   VLFGDSITQQSF  GGWG+ +ADTYSRK D++NRGY
Sbjct:    2 RPQIVLFGDSITQQSFRSGGWGAALADTYSRKADIINRGY 41
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BLAST of mRNA_M-pyrifera_M_contig85170.19852.1 vs. uniprot
Match: A0A2T7DLQ6_9POAL (SGNH_hydro domain-containing protein n=1 Tax=Panicum hallii var. hallii TaxID=1504633 RepID=A0A2T7DLQ6_9POAL)

HSP 1 Score: 63.2 bits (152), Expect = 2.430e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    4 AASGEHTSFRRTAVLFGDSITQQSFAIGGWGSIVADTYSRKVDVLNRGY 150
            A SG     R   VLFGDSIT+QSF  GGWG+ +ADTYSRK DV+ RGY
Sbjct:   22 ATSGSLGLVRPRVVLFGDSITEQSFRPGGWGAALADTYSRKADVVVRGY 70
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BLAST of mRNA_M-pyrifera_M_contig85170.19852.1 vs. uniprot
Match: UPI00125E8F22 (GDSL esterase/lipase At5g62930 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E8F22)

HSP 1 Score: 65.1 bits (157), Expect = 2.690e-11
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   31 RRTAVLFGDSITQQSFAIGGWGSIVADTYSRKVDVLNRGY 150
            R   +LFGDSIT+QSF +GGWG+ +AD YSRK D+LNRGY
Sbjct:    2 RPQIILFGDSITEQSFRLGGWGAAIADNYSRKADILNRGY 41
[Close]
BLAST of mRNA_M-pyrifera_M_contig85170.19852.1 vs. uniprot
Match: A0A804MI88_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804MI88_MAIZE)

HSP 1 Score: 64.7 bits (156), Expect = 2.810e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    4 AASGEHTSFRRTAVLFGDSITQQSFAIGGWGSIVADTYSRKVDVLNRGY 150
            AA G     R   VLFGDSIT+QSF  GGWG+ +ADTYSRK DV+ RGY
Sbjct:   23 AAGGSQKMVRPRLVLFGDSITEQSFRPGGWGAALADTYSRKADVVVRGY 71
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85170.19852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C2802453.790e-1277.50GDSL esterase/lipase At5g62930-like isoform X3 n=1... [more]
UPI001C2537325.190e-1277.50GDSL esterase/lipase At5g62930-like isoform X1 n=2... [more]
A0A6J1JV25_CUCMA7.150e-1263.83GDSL esterase/lipase At5g62930-like n=3 Tax=Cucurb... [more]
A0A484N2X1_9ASTE8.260e-1272.50Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A3Q7HUH7_SOLLC1.350e-1170.00SGNH_hydro domain-containing protein n=3 Tax=Solan... [more]
A0A7N0ZYM2_KALFE1.620e-1175.00SGNH_hydro domain-containing protein n=1 Tax=Kalan... [more]
A0A2I4EPG8_JUGRE1.930e-1172.50GDSL esterase/lipase At5g62930 isoform X1 n=7 Tax=... [more]
A0A2T7DLQ6_9POAL2.430e-1163.27SGNH_hydro domain-containing protein n=1 Tax=Panic... [more]
UPI00125E8F222.690e-1167.50GDSL esterase/lipase At5g62930 n=2 Tax=Ipomoea Tax... [more]
A0A804MI88_MAIZE2.810e-1163.27Uncharacterized protein n=1 Tax=Zea mays TaxID=457... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85170contigM-pyrifera_M_contig85170:54..209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.9
Seed ortholog evalue6.6e-09
Seed eggNOG ortholog4081.Solyc06g071510.2.1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.esterase
EggNOG OGs37PU4@33090,3GCNZ@35493,44EIR@71274,COG0214@1,KOG3035@2759
COG Functional cat.I
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size156
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.971579-CDS-M-pyrifera_M_contig85170:53..2091622816759.971579-CDS-M-pyrifera_M_contig85170:53..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85170 54..209 -
1692278161.9523008-CDS-M-pyrifera_M_contig85170:53..2091692278161.9523008-CDS-M-pyrifera_M_contig85170:53..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85170 54..209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85170.19852.1prot_M-pyrifera_M_contig85170.19852.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85170 54..209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85170.19852.1

>prot_M-pyrifera_M_contig85170.19852.1 ID=prot_M-pyrifera_M_contig85170.19852.1|Name=mRNA_M-pyrifera_M_contig85170.19852.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
MAASGEHTSFRRTAVLFGDSITQQSFAIGGWGSIVADTYSRKVDVLNRGY
R*
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mRNA from alignment at M-pyrifera_M_contig85170:54..209-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85170.19852.1 ID=mRNA_M-pyrifera_M_contig85170.19852.1|Name=mRNA_M-pyrifera_M_contig85170.19852.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig85170:54..209- (Macrocystis pyrifera P11B4 male)
ATGGCAGCAAGCGGGGAGCACACCTCATTTCGACGCACCGCAGTGCTTTT
TGGAGACTCAATTACGCAACAGTCGTTCGCAATTGGAGGTTGGGGTTCGA
TTGTGGCCGATACGTATTCTAGGAAAGTGGATGTGTTGAATCGTGGATAT
AGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85170:54..209-

>mRNA_M-pyrifera_M_contig85170.19852.1 ID=mRNA_M-pyrifera_M_contig85170.19852.1|Name=mRNA_M-pyrifera_M_contig85170.19852.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig85170:54..209- (Macrocystis pyrifera P11B4 male)
ATGGCAGCAAGCGGGGAGCACACCTCATTTCGACGCACCGCAGTGCTTTT
TGGAGACTCAATTACGCAACAGTCGTTCGCAATTGGAGGTTGGGGTTCGA
TTGTGGCCGATACGTATTCTAGGAAAGTGGATGTGTTGAATCGTGGATAT
AGGTAAATGGCAGCAAGCGGGGAGCACACCTCATTTCGACGCACCGCAGT
GCTTTTTGGAGACTCAATTACGCAACAGTCGTTCGCAATTGGAGGTTGGG
GTTCGATTGTGGCCGATACGTATTCTAGGAAAGTGGATGTGTTGAATCGT
GGATATAGGTAA
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