mRNA_M-pyrifera_M_contig85165.19849.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85165.19849.1
Unique NamemRNA_M-pyrifera_M_contig85165.19849.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85165.19849.1 vs. uniprot
Match: A0A7S1CJ88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJ88_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.960e-29
Identity = 62/118 (52.54%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    1 VLGLALFANALSVTVLFPFLGPLVTWLDGTGNDVRQRGVYAGVIGAAFMVGRVCTSTGWGWVGDHYGRRVVMLASIGSVVLNIIAFGLAETFWVAVLVRFVTGACNGSVGTAKAMASE 354
            VL + LFANAL+VT+LFPF+G +V  L G  +D  + G YAG IG+AFMVGR CTS  WG   D +GRR V+L  + S+V+   AFGL+ +F +A++ R + G CN  VGTAK  ASE
Sbjct:   56 VLAIVLFANALNVTMLFPFVGFMVEDL-GMTHDRAELGFYAGWIGSAFMVGRTCTSFAWGTWSDKHGRRPVLLLGLVSIVVTAAAFGLSSSFAMAIVARLIAGLCNAIVGTAKTCASE 172          
BLAST of mRNA_M-pyrifera_M_contig85165.19849.1 vs. uniprot
Match: A0A812N2C8_9DINO (ZIFL2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N2C8_9DINO)

HSP 1 Score: 116 bits (291), Expect = 4.410e-28
Identity = 61/113 (53.98%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   16 LFANALSVTVLFPFLGPLVTWLDGTGNDVRQRGVYAGVIGAAFMVGRVCTSTGWGWVGDHYGRRVVMLASIGSVVLNIIAFGLAETFWVAVLVRFVTGACNGSVGTAKAMASE 354
            +F NA  +TVLFPF+G +V  LD T +D R+ G YAG IGAAFM GR+CTS GWGW  D YGR+ VM+  I ++V+  I FG +  F  A+ +RF+TG  NG VGT K M SE
Sbjct:    1 MFTNAFMLTVLFPFVGAMVETLDLT-HDKRELGYYAGYIGAAFMAGRLCTSYGWGWFSDRYGRKPVMVIGITAMVVFSIGFGCSFNFAWALAMRFMTGFWNGIVGTGKTMVSE 112          
BLAST of mRNA_M-pyrifera_M_contig85165.19849.1 vs. uniprot
Match: W1NRH1_AMBTC (MFS domain-containing protein n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1NRH1_AMBTC)

HSP 1 Score: 97.8 bits (242), Expect = 1.940e-21
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   25 NALSVTVLFPFLGPLVTWLDGTGNDVRQRGVYAGVIGAAFMVGRVCTSTGWGWVGDHYGRRVVMLASIGSVVLNIIAFGLAETFWVAVLVRFVTGACNGSVGTAKAMASE 354
            ++L +++LFPFL  +V     T   V   G YAG +G++FMVGR  TS  WG   D YGR+ V+L  +GS+VL    FGL+ +FW+AV+ RF+ G  NG +GT KA ASE
Sbjct:   48 SSLPISLLFPFLYFMVRDFHIT-EQVEDIGFYAGFVGSSFMVGRFLTSYLWGMAADRYGRKPVILCGVGSIVLFNGLFGLSNSFWMAVITRFILGCFNGLLGTIKAYASE 156          
BLAST of mRNA_M-pyrifera_M_contig85165.19849.1 vs. uniprot
Match: A0A5A8EMG4_CAFRO (MFS domain-containing protein n=6 Tax=Sar TaxID=2698737 RepID=A0A5A8EMG4_CAFRO)

HSP 1 Score: 90.9 bits (224), Expect = 6.530e-19
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 1
Query:   22 ANALSVTVLFPFLGPLVTWLDGTGNDVRQRGVYAGVIGAAFMVGRVCTSTGWGWVGDHYGRR-VVMLASIGSVVLNIIAFGLAETFWVAVLVRFVTGACNGSVGTAKAMASE 354
            A+AL +T  FP +GP+ + L      + + G YAG++GAAFM GRV TST WGW+ D  GR+ V+++ ++  VV+NI+ F ++ +F +AV +R VTG  NG VG  KA+  E
Sbjct:   15 ASALVLTAAFPIVGPMASSL--LDMPIDEVGGYAGILGAAFMAGRVLTSTLWGWLSDRIGRKPVILIGTLLCVVVNIL-FSISSSFAMAVTLRVVTGVVNGVVGVNKAVTGE 123          
BLAST of mRNA_M-pyrifera_M_contig85165.19849.1 vs. uniprot
Match: UPI001EE5D47E (protein ZINC INDUCED FACILITATOR-LIKE 1-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5D47E)

HSP 1 Score: 88.6 bits (218), Expect = 4.130e-18
Identity = 45/114 (39.47%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   13 ALFANALSVTVLFPFLGPLVTWLDGTGNDVRQRGVYAGVIGAAFMVGRVCTSTGWGWVGDHYGRRVVMLASIGSVVLNIIAFGLAETFWVAVLVRFVTGACNGSVGTAKAMASE 354
            AL +++ ++T LFPFL  +V WL   G     +G Y G+I ++   GR C S  WGW+ D  GR+VV+L +I    +  + FG +    +A+ +RF++G CNG+VGTAK +  E
Sbjct:   86 ALISSSFTLTFLFPFLPDMVKWL---GYSEEAKGYYVGLIASSVFAGRACGSFFWGWLSDVKGRKVVLLLTIAGNGIFSLLFGFSVNLPMAMFLRFMSGLCNGTVGTAKTVLYE 196          
BLAST of mRNA_M-pyrifera_M_contig85165.19849.1 vs. uniprot
Match: UPI00201F68AF (probable peptide/nitrate transporter At3g43790 isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F68AF)

HSP 1 Score: 87.8 bits (216), Expect = 8.020e-18
Identity = 44/114 (38.60%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   13 ALFANALSVTVLFPFLGPLVTWLDGTGNDVRQRGVYAGVIGAAFMVGRVCTSTGWGWVGDHYGRRVVMLASIGSVVLNIIAFGLAETFWVAVLVRFVTGACNGSVGTAKAMASE 354
            AL +++ ++T LFPFL  +V WL   G     +G Y G+I ++   GR C S  WGW+ D  GR+VV+L ++    +  + FG +    +A+++RF+ G CNG+VGTAK +  E
Sbjct:   84 ALMSSSFTLTFLFPFLPDMVKWL---GYTEEAKGYYVGLIASSVFAGRACGSFFWGWLSDVKGRKVVLLLTLAGNGIFSLLFGFSVNLPMAMILRFLAGLCNGTVGTAKTVLYE 194          
BLAST of mRNA_M-pyrifera_M_contig85165.19849.1 vs. uniprot
Match: A0A371IFC3_MUCPR (Protein ZINC INDUCED FACILITATOR-LIKE 1 (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371IFC3_MUCPR)

HSP 1 Score: 86.3 bits (212), Expect = 2.480e-17
Identity = 46/118 (38.98%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 VLGLALFANALSVTVLFPFLGPLVTWLDGTGNDVRQRGVYAGVIGAAFMVGRVCTSTGWGWVGDHYGRRVVMLASIGSVVLNIIAFGLAETFWVAVLVRFVTGACNGSVGTAKAMASE 354
            ++ + +   AL ++ LFPFL  +V   +    +      YAG +G+AFM+GR  TS  WG V D YGR+ V++  I +VV+    FGL+ +FW+A+++RF++G+ NG +G  KA A+E
Sbjct:   43 IIWMVVLCAALPISSLFPFLYFMVRDFNIAKTEA-DISTYAGYVGSAFMLGRCLTSVLWGIVADRYGRKPVIVIGIVAVVIFNTLFGLSTSFWMAIIMRFLSGSLNGLLGPVKAYATE 159          
BLAST of mRNA_M-pyrifera_M_contig85165.19849.1 vs. uniprot
Match: A0A6P3ZDM7_ZIZJJ (protein ZINC INDUCED FACILITATOR-LIKE 1-like isoform X3 n=8 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZDM7_ZIZJJ)

HSP 1 Score: 85.5 bits (210), Expect = 4.520e-17
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   25 NALSVTVLFPFLGPLVTWLDGTGNDVRQRGVYAGVIGAAFMVGRVCTSTGWGWVGDHYGRR-VVMLASIGSVVLNIIAFGLAETFWVAVLVRFVTGACNGSVGTAKAMASE 354
            +AL ++ LFPFL  +V        +      Y+G IGAAFM+GR CTS  WG V D YGR+ V++L +I  V+ N + FGL+  +W+A++ RF+ G  NG +G  KA A E
Sbjct:   50 SALPISSLFPFLYFMVKDFHIAKRE-EDISFYSGFIGAAFMLGRACTSVFWGLVADRYGRKPVIILGTIAVVIFNTL-FGLSVNYWMAIITRFLLGCLNGVLGPIKAYAVE 158          
BLAST of mRNA_M-pyrifera_M_contig85165.19849.1 vs. uniprot
Match: I1INR8_BRADI (MFS domain-containing protein n=4 Tax=Brachypodium distachyon TaxID=15368 RepID=I1INR8_BRADI)

HSP 1 Score: 85.5 bits (210), Expect = 4.690e-17
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   25 NALSVTVLFPFLGPLVTWLDGTGNDVRQRGVYAGVIGAAFMVGRVCTSTGWGWVGDHYGRRVVMLASIGSVVLNIIAFGLAETFWVAVLVRFVTGACNGSVGTAKAMASE 354
            + LS++ LFPFL  ++         V   G YAG +GAA+M+GR  TSTGWG + D  GR+ V++  I S +L    FGL+  +W+A+  RF+ G+ NG +G  +A A E
Sbjct:   57 SCLSISSLFPFLYFMIRDFH-IAKTVEDIGFYAGFVGAAYMLGRALTSTGWGVIADRIGRKPVIVFGIFSALLFNTLFGLSVNYWMAISTRFLIGSLNGLIGPIRAYAIE 165          
BLAST of mRNA_M-pyrifera_M_contig85165.19849.1 vs. uniprot
Match: A0A136JEY6_9PEZI (Major facilitator superfamily domain-containing protein n=1 Tax=Microdochium bolleyi TaxID=196109 RepID=A0A136JEY6_9PEZI)

HSP 1 Score: 85.5 bits (210), Expect = 5.080e-17
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 VLGLALFANALSVTVLFPFLGPLVTWLDGTGNDVRQRGVYAGVIGAAFMVGRVCTSTGWGWVGDHYGRRVVMLASIGSVVLNIIAFGLAETFWVAVLVRFVTGACNGSVGTAKAMASE 354
            +L +  F+  ++   +  +   LV  L GT  D    G YAG++ +A+ V    T+ GWG + D YGR+ ++L  +G V L+ + FGLA+++WVA+L RF+ GA NG+V   + M +E
Sbjct:   23 ILAICRFSEPIAFNSILAYTYVLVRDLRGTEQDA---GFYAGLLVSAYAVAEAITAMGWGALSDRYGRKPIVLIGLGGVALSSLIFGLAQSYWVALLARFIGGALNGNVSVMQTMVAE 137          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85165.19849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CJ88_9STRA1.960e-2952.54Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812N2C8_9DINO4.410e-2853.98ZIFL2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
W1NRH1_AMBTC1.940e-2147.27MFS domain-containing protein n=3 Tax=Amborella tr... [more]
A0A5A8EMG4_CAFRO6.530e-1944.64MFS domain-containing protein n=6 Tax=Sar TaxID=26... [more]
UPI001EE5D47E4.130e-1839.47protein ZINC INDUCED FACILITATOR-LIKE 1-like n=1 T... [more]
UPI00201F68AF8.020e-1838.60probable peptide/nitrate transporter At3g43790 iso... [more]
A0A371IFC3_MUCPR2.480e-1738.98Protein ZINC INDUCED FACILITATOR-LIKE 1 (Fragment)... [more]
A0A6P3ZDM7_ZIZJJ4.520e-1743.24protein ZINC INDUCED FACILITATOR-LIKE 1-like isofo... [more]
I1INR8_BRADI4.690e-1740.91MFS domain-containing protein n=4 Tax=Brachypodium... [more]
A0A136JEY6_9PEZI5.080e-1736.44Major facilitator superfamily domain-containing pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85165contigM-pyrifera_M_contig85165:478..831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.4
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog13333.ERM98148
Hectar predicted targeting categorysignal peptide
GOsGO:0000325,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0008150,GO:0008324,GO:0009605,GO:0009607,GO:0009624,GO:0009705,GO:0009987,GO:0010119,GO:0015075,GO:0015077,GO:0015079,GO:0015291,GO:0015297,GO:0015318,GO:0015672,GO:0016020,GO:0022804,GO:0022821,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0034220,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0065007,GO:0071804,GO:0071805,GO:0071944,GO:0090333,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098805
EggNOG free text desc.Protein ZINC INDUCED
EggNOG OGs37P1M@33090,3GGHM@35493,KOG2615@1,KOG2615@2759
COG Functional cat.J
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.869424-CDS-M-pyrifera_M_contig85165:477..8311622816759.869424-CDS-M-pyrifera_M_contig85165:477..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85165 478..831 +
1692278161.9142044-CDS-M-pyrifera_M_contig85165:477..8311692278161.9142044-CDS-M-pyrifera_M_contig85165:477..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85165 478..831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85165.19849.1prot_M-pyrifera_M_contig85165.19849.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85165 478..831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85165.19849.1

>prot_M-pyrifera_M_contig85165.19849.1 ID=prot_M-pyrifera_M_contig85165.19849.1|Name=mRNA_M-pyrifera_M_contig85165.19849.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
VLGLALFANALSVTVLFPFLGPLVTWLDGTGNDVRQRGVYAGVIGAAFMV
GRVCTSTGWGWVGDHYGRRVVMLASIGSVVLNIIAFGLAETFWVAVLVRF
VTGACNGSVGTAKAMASE
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mRNA from alignment at M-pyrifera_M_contig85165:478..831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85165.19849.1 ID=mRNA_M-pyrifera_M_contig85165.19849.1|Name=mRNA_M-pyrifera_M_contig85165.19849.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig85165:478..831+ (Macrocystis pyrifera P11B4 male)
GTATTGGGGTTGGCGTTGTTTGCGAATGCGTTGAGTGTGACTGTGTTATT TCCCTTCTTGGGCCCGCTTGTGACTTGGTTGGACGGCACTGGGAATGATG TGCGTCAGCGAGGTGTGTATGCTGGTGTGATCGGAGCAGCATTCATGGTT GGGCGTGTGTGCACCAGCACTGGTTGGGGTTGGGTGGGAGATCATTATGG GAGACGTGTGGTGATGTTGGCTTCAATTGGAAGTGTGGTGCTAAACATTA TTGCATTTGGTTTGGCAGAGACATTTTGGGTTGCAGTGTTGGTTCGCTTC GTGACTGGAGCTTGCAATGGGAGTGTAGGGACAGCGAAAGCAATGGCGAG TGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85165:478..831+

>mRNA_M-pyrifera_M_contig85165.19849.1 ID=mRNA_M-pyrifera_M_contig85165.19849.1|Name=mRNA_M-pyrifera_M_contig85165.19849.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig85165:478..831+ (Macrocystis pyrifera P11B4 male)
GTATTGGGGTTGGCGTTGTTTGCGAATGCGTTGAGTGTGACTGTGTTATT
TCCCTTCTTGGGCCCGCTTGTGACTTGGTTGGACGGCACTGGGAATGATG
TGCGTCAGCGAGGTGTGTATGCTGGTGTGATCGGAGCAGCATTCATGGTT
GGGCGTGTGTGCACCAGCACTGGTTGGGGTTGGGTGGGAGATCATTATGG
GAGACGTGTGGTGATGTTGGCTTCAATTGGAAGTGTGGTGCTAAACATTA
TTGCATTTGGTTTGGCAGAGACATTTTGGGTTGCAGTGTTGGTTCGCTTC
GTGACTGGAGCTTGCAATGGGAGTGTAGGGACAGCGAAAGCAATGGCGAG
TGAGGTATTGGGGTTGGCGTTGTTTGCGAATGCGTTGAGTGTGACTGTGT
TATTTCCCTTCTTGGGCCCGCTTGTGACTTGGTTGGACGGCACTGGGAAT
GATGTGCGTCAGCGAGGTGTGTATGCTGGTGTGATCGGAGCAGCATTCAT
GGTTGGGCGTGTGTGCACCAGCACTGGTTGGGGTTGGGTGGGAGATCATT
ATGGGAGACGTGTGGTGATGTTGGCTTCAATTGGAAGTGTGGTGCTAAAC
ATTATTGCATTTGGTTTGGCAGAGACATTTTGGGTTGCAGTGTTGGTTCG
CTTCGTGACTGGAGCTTGCAATGGGAGTGTAGGGACAGCGAAAGCAATGG
CGAGTGAG
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