mRNA_M-pyrifera_M_contig85164.19848.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85164.19848.1
Unique NamemRNA_M-pyrifera_M_contig85164.19848.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85164.19848.1 vs. uniprot
Match: A0A5A8E603_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E603_CAFRO)

HSP 1 Score: 97.1 bits (240), Expect = 7.920e-22
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    4 RRERCEHVMHILTKELANEVRRIKDLHACPPHQVSALRWKAARERAEAGDWIMRILADYKMISATVMADYLR 219
            +R+RCEH + IL +E+A EV+R   L ACP  ++  LRW+ ARERAEAGDWIMRIL DY+++SATVM DYLR
Sbjct:    4 KRQRCEHALAILQEEVAKEVQRQSSLAACPAGRLGRLRWQVARERAEAGDWIMRILQDYRLVSATVMVDYLR 75
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BLAST of mRNA_M-pyrifera_M_contig85164.19848.1 vs. uniprot
Match: A0A5A8C4A1_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C4A1_CAFRO)

HSP 1 Score: 97.1 bits (240), Expect = 8.230e-22
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    4 RRERCEHVMHILTKELANEVRRIKDLHACPPHQVSALRWKAARERAEAGDWIMRILADYKMISATVMADYLR 219
            +R+RCEH + IL +E+A EV+R   L ACP  ++  LRW+ ARERAEAGDWIMRIL DY+++SATVM DYLR
Sbjct:  236 KRQRCEHALAILQEEVAKEVQRQSSLAACPAGRLGRLRWQVARERAEAGDWIMRILQDYRLVSATVMVDYLR 307
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BLAST of mRNA_M-pyrifera_M_contig85164.19848.1 vs. uniprot
Match: A0A2R5GH53_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GH53_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.060e-10
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 HRRERCEHVMHILTKELANEVRRIKDLHACPP-HQVSALRWKAARERAEAGDWIMRILADYKMISATVMADYL 216
            HR  R EH+++++ +E   ++RR  DL AC    ++  L W+ AR+R EA D +MR+L DYK+ISAT + +YL
Sbjct:  205 HRLRRLEHLLYLVQEEQRKDMRREIDLCACDDTRELRNLVWETARDRTEAADMLMRLLDDYKLISATEIGEYL 277
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85164.19848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5A8E603_CAFRO7.920e-2262.50Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8C4A1_CAFRO8.230e-2262.50Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A2R5GH53_9STRA7.060e-1043.84Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85164contigM-pyrifera_M_contig85164:4..225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size195
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.8256679-UTR-M-pyrifera_M_contig85164:3..301622816759.8256679-UTR-M-pyrifera_M_contig85164:3..30Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85164 4..30 +
1692278161.8926141-UTR-M-pyrifera_M_contig85164:3..301692278161.8926141-UTR-M-pyrifera_M_contig85164:3..30Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85164 4..30 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.8371356-CDS-M-pyrifera_M_contig85164:30..2251622816759.8371356-CDS-M-pyrifera_M_contig85164:30..225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85164 31..225 +
1692278161.9036202-CDS-M-pyrifera_M_contig85164:30..2251692278161.9036202-CDS-M-pyrifera_M_contig85164:30..225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85164 31..225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85164.19848.1prot_M-pyrifera_M_contig85164.19848.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85164 31..225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85164.19848.1

>prot_M-pyrifera_M_contig85164.19848.1 ID=prot_M-pyrifera_M_contig85164.19848.1|Name=mRNA_M-pyrifera_M_contig85164.19848.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
MHILTKELANEVRRIKDLHACPPHQVSALRWKAARERAEAGDWIMRILAD
YKMISATVMADYLR*
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mRNA from alignment at M-pyrifera_M_contig85164:4..225+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85164.19848.1 ID=mRNA_M-pyrifera_M_contig85164.19848.1|Name=mRNA_M-pyrifera_M_contig85164.19848.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig85164:4..225+ (Macrocystis pyrifera P11B4 male)
CATCGCAGAGAACGATGCGAACATGTCATGCACATCCTCACAAAAGAGCT
CGCAAACGAAGTGAGACGCATCAAAGACCTCCACGCCTGCCCTCCACACC
AAGTATCGGCGCTACGATGGAAGGCAGCGAGGGAAAGAGCAGAGGCCGGA
GATTGGATCATGAGAATCCTAGCAGACTACAAAATGATCTCAGCAACAGT
CATGGCTGACTATCTCAGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85164:4..225+

>mRNA_M-pyrifera_M_contig85164.19848.1 ID=mRNA_M-pyrifera_M_contig85164.19848.1|Name=mRNA_M-pyrifera_M_contig85164.19848.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig85164:4..225+ (Macrocystis pyrifera P11B4 male)
ATGCACATCCTCACAAAAGAGCTCGCAAACGAAGTGAGACGCATCAAAGA
CCTCCACGCCTGCCCTCCACACCAAGTATCGGCGCTACGATGGAAGGCAG
CGAGGGAAAGAGCAGAGGCCGGAGATTGGATCATGAGAATCCTAGCAGAC
TACAAAATGATCTCAGCAACAGTCATGGCTGACTATCTCAGGTAAATGCA
CATCCTCACAAAAGAGCTCGCAAACGAAGTGAGACGCATCAAAGACCTCC
ACGCCTGCCCTCCACACCAAGTATCGGCGCTACGATGGAAGGCAGCGAGG
GAAAGAGCAGAGGCCGGAGATTGGATCATGAGAATCCTAGCAGACTACAA
AATGATCTCAGCAACAGTCATGGCTGACTATCTCAGGTAA
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