mRNA_M-pyrifera_M_contig85157.19846.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85157.19846.1
Unique NamemRNA_M-pyrifera_M_contig85157.19846.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85157.19846.1 vs. uniprot
Match: A0A8J4UWW6_9MYCE (Proteasome subunit beta n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UWW6_9MYCE)

HSP 1 Score: 257 bits (656), Expect = 5.350e-84
Identity = 127/161 (78.88%), Postives = 142/161 (88.20%), Query Frame = 1
Query:   16 FARTTFEAADSPADLKFAHGTTTLGFVFKHGVVIAVDSRSTQGPYIASQSVKKVLKITPYLLGTMAGGAADCQFWERELGRRCRLYELRNKKRITVAAASKILGNITYSYKGYGLSMGTMIAGWDHTGPNLHYVDSDGTRLKGQRFSVGSGSTYAYGVLDT 498
            F +  FE   +P  L+FAHGTTTL FV+  GVV+AVDS+STQGPY+AS+SVKKVL+ITP LLGTMAGGAADC FWERELG+RCRLYELRNK+ I+VAAASKIL NI YSYKGYGLSMGTMI GWD TGP L+YVD+DGTRLKGQRFSVGSGSTYAYGVLD+
Sbjct:   40 FLQHVFEHPSAPKKLEFAHGTTTLAFVYAGGVVVAVDSKSTQGPYVASRSVKKVLEITPTLLGTMAGGAADCSFWERELGKRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPCLYYVDNDGTRLKGQRFSVGSGSTYAYGVLDS 200          
BLAST of mRNA_M-pyrifera_M_contig85157.19846.1 vs. uniprot
Match: PSB5_DICDI (Proteasome subunit beta type-5 n=2 Tax=Dictyostelium TaxID=5782 RepID=PSB5_DICDI)

HSP 1 Score: 256 bits (653), Expect = 1.630e-83
Identity = 124/161 (77.02%), Postives = 141/161 (87.58%), Query Frame = 1
Query:   16 FARTTFEAADSPADLKFAHGTTTLGFVFKHGVVIAVDSRSTQGPYIASQSVKKVLKITPYLLGTMAGGAADCQFWERELGRRCRLYELRNKKRITVAAASKILGNITYSYKGYGLSMGTMIAGWDHTGPNLHYVDSDGTRLKGQRFSVGSGSTYAYGVLDT 498
            F R TF+   +P  L+FAHGTTTL FV+  G++++VDS+STQGPY+AS+SVKKV++ITP LLGTMAGGAADC FWERELGRRCRLYELRNK+ I+VAAASKIL NI YSYKGYGLSMGTMI GWD TGP L+YVD+DGTRL GQRFS GSGSTYAYGVLDT
Sbjct:   43 FLRETFDHPSAPKALEFAHGTTTLAFVYGGGIIVSVDSKSTQGPYVASRSVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPQLYYVDNDGTRLHGQRFSCGSGSTYAYGVLDT 203          
BLAST of mRNA_M-pyrifera_M_contig85157.19846.1 vs. uniprot
Match: A0A2P6NFK4_9EUKA (Proteasome subunit beta n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NFK4_9EUKA)

HSP 1 Score: 251 bits (641), Expect = 8.090e-82
Identity = 123/160 (76.88%), Postives = 140/160 (87.50%), Query Frame = 1
Query:   16 FARTTFEAADSPADLKFAHGTTTLGFVFKHGVVIAVDSRSTQGPYIASQSVKKVLKITPYLLGTMAGGAADCQFWERELGRRCRLYELRNKKRITVAAASKILGNITYSYKGYGLSMGTMIAGWDHTGPNLHYVDSDGTRLKGQRFSVGSGSTYAYGVLD 495
            F R TF+ A++PA ++ AHGTTTLGF++ HGVVIAVDSRSTQG YIAS +VKKV++I PYLLGTMAGGAADC +WERELGR+CRL+ELRNK+RI+VAAASKIL NI YSYKGYGLSMGTMIAGWD  G  L YVDSDGTRL+   FSVGSGSTYAYG+LD
Sbjct:   35 FIRDTFQKANAPAPIEMAHGTTTLGFIYDHGVVIAVDSRSTQGSYIASGTVKKVIEINPYLLGTMAGGAADCSYWERELGRQCRLFELRNKERISVAAASKILSNIVYSYKGYGLSMGTMIAGWDKRGAQLWYVDSDGTRLENNIFSVGSGSTYAYGILD 194          
BLAST of mRNA_M-pyrifera_M_contig85157.19846.1 vs. uniprot
Match: A0A151ZFP2_9MYCE (Proteasome subunit beta type-5 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZFP2_9MYCE)

HSP 1 Score: 248 bits (634), Expect = 1.380e-80
Identity = 123/163 (75.46%), Postives = 141/163 (86.50%), Query Frame = 1
Query:   16 FARTTFEAADSPADLKFAHGTTTLGFVFKHGVVIAVDSRSTQGPYIASQSVKKVLKITPYLLGTMAGGAADCQFWERELGRRCRLYELRNKKRITVAAASKILGNITYSYKGYGLSMGTMIAGWDHTG--PNLHYVDSDGTRLKGQRFSVGSGSTYAYGVLDT 498
            F    F+  ++P  L+FAHGTTTL FV+K GVV+ VDS+STQGPY+AS++VKKV++ITP LLGTMAGGAADC FWERELGRRCRLYELRNK+ I+VAAASKIL NI YSYKGYGLSMGTMI GWD     P+L+YVD+DGTRLKG+RFSVGSGSTYAYGVLDT
Sbjct:   40 FLNEVFDHPNAPKALEFAHGTTTLAFVYKGGVVVTVDSKSTQGPYVASRTVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKNSDVPSLYYVDNDGTRLKGERFSVGSGSTYAYGVLDT 202          
BLAST of mRNA_M-pyrifera_M_contig85157.19846.1 vs. uniprot
Match: F4PRF6_CAVFA (Proteasome subunit beta n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PRF6_CAVFA)

HSP 1 Score: 249 bits (635), Expect = 2.150e-80
Identity = 120/152 (78.95%), Postives = 137/152 (90.13%), Query Frame = 1
Query:   43 DSPADLKFAHGTTTLGFVFKHGVVIAVDSRSTQGPYIASQSVKKVLKITPYLLGTMAGGAADCQFWERELGRRCRLYELRNKKRITVAAASKILGNITYSYKGYGLSMGTMIAGWDHTGPNLHYVDSDGTRLKGQRFSVGSGSTYAYGVLDT 498
            ++P  ++ AHGTTTL FVF  GV++AVDS+STQG Y+AS++VKKV++ITP LLGTMAGGAADC FWERELGRRCRLYELRNK+ I+VAAASKIL NI YSYKGYGLSMGTMI GWD TGP L+YVD+DGTRLKGQRFSVGSGSTYAYGVLD+
Sbjct:   78 NAPKPIEMAHGTTTLAFVFNGGVIVAVDSKSTQGSYVASRTVKKVIEITPNLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPCLYYVDNDGTRLKGQRFSVGSGSTYAYGVLDS 229          
BLAST of mRNA_M-pyrifera_M_contig85157.19846.1 vs. uniprot
Match: UPI0006449400 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449400)

HSP 1 Score: 245 bits (625), Expect = 3.750e-79
Identity = 116/152 (76.32%), Postives = 136/152 (89.47%), Query Frame = 1
Query:   43 DSPADLKFAHGTTTLGFVFKHGVVIAVDSRSTQGPYIASQSVKKVLKITPYLLGTMAGGAADCQFWERELGRRCRLYELRNKKRITVAAASKILGNITYSYKGYGLSMGTMIAGWDHTGPNLHYVDSDGTRLKGQRFSVGSGSTYAYGVLDT 498
            D+P  ++ AHGTTTL FV+  GV++ VDS+STQG Y+AS++VKKV++ITP LLGTMAGGAADC FWERELGRRCRLY+LRNK+ I+V+AASKIL NI YSYKGYGLSMGTM+ GWD TGP L+YVD+DGTRLKGQRFSVGSGSTYAYGVLD+
Sbjct:   53 DAPKPIEMAHGTTTLAFVYAGGVIVTVDSKSTQGSYVASRTVKKVIEITPNLLGTMAGGAADCSFWERELGRRCRLYQLRNKELISVSAASKILANIVYSYKGYGLSMGTMVTGWDKTGPCLYYVDNDGTRLKGQRFSVGSGSTYAYGVLDS 204          
BLAST of mRNA_M-pyrifera_M_contig85157.19846.1 vs. uniprot
Match: A0A433PZJ2_9FUNG (Proteasome subunit beta n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PZJ2_9FUNG)

HSP 1 Score: 244 bits (624), Expect = 5.320e-79
Identity = 116/147 (78.91%), Postives = 134/147 (91.16%), Query Frame = 1
Query:   58 LKFAHGTTTLGFVFKHGVVIAVDSRSTQGPYIASQSVKKVLKITPYLLGTMAGGAADCQFWERELGRRCRLYELRNKKRITVAAASKILGNITYSYKGYGLSMGTMIAGWDHTGPNLHYVDSDGTRLKGQRFSVGSGSTYAYGVLDT 498
            +K  HGTTTL F F+ GV+IAVDSR+T GPYIASQ+VKKV++I PYLLGTMAGGAADC +WERELGRRCRLYELRNK+RI+VAAASK+L N+ YSYKG GLSMGTM+AGWD TGPNL YVDSDG+R+KG+RFSVGSGST+AYGVLD+
Sbjct:   64 IKIQHGTTTLAFQFQGGVIIAVDSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSYWERELGRRCRLYELRNKERISVAAASKLLANMVYSYKGMGLSMGTMVAGWDKTGPNLFYVDSDGSRIKGERFSVGSGSTFAYGVLDS 210          
BLAST of mRNA_M-pyrifera_M_contig85157.19846.1 vs. uniprot
Match: A0A7S4NQP9_9EUKA (Proteasome subunit beta n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NQP9_9EUKA)

HSP 1 Score: 243 bits (620), Expect = 1.620e-78
Identity = 118/161 (73.29%), Postives = 141/161 (87.58%), Query Frame = 1
Query:   16 FARTTFEAADSPADLKFAHGTTTLGFVFKHGVVIAVDSRSTQGPYIASQSVKKVLKITPYLLGTMAGGAADCQFWERELGRRCRLYELRNKKRITVAAASKILGNITYSYKGYGLSMGTMIAGWDHTGPNLHYVDSDGTRLKGQRFSVGSGSTYAYGVLDT 498
            F + TF   ++P  ++FAHGTTTLGFVF+HGVVIAVDSR+T+G +IASQSVKKV++I PYLLGTMAGGAADC FWER LG   RL+EL+NK+RI+V+AASK L NI YSY+GYGLS+GTMIAGWD TGPNLHYVDSD +R+KG+ FSVGSGSTYAYG+LD+
Sbjct:   41 FLQDTFAQENAPKAIEFAHGTTTLGFVFQHGVVIAVDSRATRGAHIASQSVKKVIEINPYLLGTMAGGAADCAFWERRLGTIARLHELQNKERISVSAASKTLQNIMYSYRGYGLSIGTMIAGWDKTGPNLHYVDSDASRIKGKMFSVGSGSTYAYGILDS 201          
BLAST of mRNA_M-pyrifera_M_contig85157.19846.1 vs. uniprot
Match: A0A068S496_9FUNG (Proteasome subunit beta n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068S496_9FUNG)

HSP 1 Score: 240 bits (612), Expect = 3.200e-77
Identity = 118/153 (77.12%), Postives = 133/153 (86.93%), Query Frame = 1
Query:   43 DSPA-DLKFAHGTTTLGFVFKHGVVIAVDSRSTQGPYIASQSVKKVLKITPYLLGTMAGGAADCQFWERELGRRCRLYELRNKKRITVAAASKILGNITYSYKGYGLSMGTMIAGWDHTGPNLHYVDSDGTRLKGQRFSVGSGSTYAYGVLDT 498
            DSP   +K  HGTTTL F F+ GV++AVDSR+T G YI SQ+VKKV++I PYLLGTMAGGAADCQ+WERELGRRCRLYELRNK+RI+VAAASK+LGN+ YSYKG GLSMGTMI GWD TGPNL YVDSDG RLKG  FSVGSGST+AYGVLD+
Sbjct:   58 DSPDYKIKIQHGTTTLAFQFQGGVIVAVDSRATMGNYIGSQTVKKVIEINPYLLGTMAGGAADCQYWERELGRRCRLYELRNKERISVAAASKLLGNMVYSYKGMGLSMGTMITGWDKTGPNLFYVDSDGQRLKGDLFSVGSGSTFAYGVLDS 210          
BLAST of mRNA_M-pyrifera_M_contig85157.19846.1 vs. uniprot
Match: A0A0L0DDW4_THETB (Proteasome subunit beta n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DDW4_THETB)

HSP 1 Score: 239 bits (610), Expect = 4.840e-77
Identity = 118/151 (78.15%), Postives = 133/151 (88.08%), Query Frame = 1
Query:   46 SPADLKFAHGTTTLGFVFKHGVVIAVDSRSTQGPYIASQSVKKVLKITPYLLGTMAGGAADCQFWERELGRRCRLYELRNKKRITVAAASKILGNITYSYKGYGLSMGTMIAGWDHTGPNLHYVDSDGTRLKGQRFSVGSGSTYAYGVLDT 498
            S   L  AHGTTTL FVFKHGVV+AVDSR+TQG YI SQ+VKKV++I PYLLGTMAGGAADC FWERELGR+CRLYELRNK+RI+V AASKILGNI Y+YKG GLSMGTM+ G D +G +L YVDSDGTRL+GQRFSVGSGST+AYGVLD+
Sbjct:   46 SATPLHMAHGTTTLAFVFKHGVVVAVDSRATQGQYIGSQTVKKVIEINPYLLGTMAGGAADCMFWERELGRQCRLYELRNKERISVRAASKILGNIVYNYKGMGLSMGTMVTGCDASGFSLFYVDSDGTRLEGQRFSVGSGSTFAYGVLDS 196          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85157.19846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4UWW6_9MYCE5.350e-8478.88Proteasome subunit beta n=1 Tax=Polysphondylium vi... [more]
PSB5_DICDI1.630e-8377.02Proteasome subunit beta type-5 n=2 Tax=Dictyosteli... [more]
A0A2P6NFK4_9EUKA8.090e-8276.88Proteasome subunit beta n=1 Tax=Planoprotostelium ... [more]
A0A151ZFP2_9MYCE1.380e-8075.46Proteasome subunit beta type-5 n=1 Tax=Tieghemoste... [more]
F4PRF6_CAVFA2.150e-8078.95Proteasome subunit beta n=1 Tax=Cavenderia fascicu... [more]
UPI00064494003.750e-7976.32hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A433PZJ2_9FUNG5.320e-7978.91Proteasome subunit beta n=1 Tax=Endogone sp. FLAS-... [more]
A0A7S4NQP9_9EUKA1.620e-7873.29Proteasome subunit beta n=1 Tax=Paramoeba aestuari... [more]
A0A068S496_9FUNG3.200e-7777.12Proteasome subunit beta n=2 Tax=Lichtheimia TaxID=... [more]
A0A0L0DDW4_THETB4.840e-7778.15Proteasome subunit beta n=1 Tax=Thecamonas trahens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85157contigM-pyrifera_M_contig85157:58..867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue5.8e-67
Seed eggNOG ortholog5786.XP_003287743.1
Preferred namePSMB11
KEGG koko:K02737,ko:K02740,ko:K05654,ko:K11598
KEGG TC3.A.1.209
KEGG Pathwayko02010,ko03050,ko04145,ko04612,ko05168,ko05340,map02010,map03050,map04145,map04612,map05168,map05340
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0016043,GO:0016579,GO:0016787,GO:0019221,GO:0019222,GO:0019538,GO:0019774,GO:0019882,GO:0019941,GO:0022607,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030162,GO:0030163,GO:0030217,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034097,GO:0034340,GO:0034515,GO:0034622,GO:0036037,GO:0036211,GO:0042110,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043374,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045087,GO:0045321,GO:0045444,GO:0046631,GO:0046632,GO:0046649,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051336,GO:0051603,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060337,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071357,GO:0071704,GO:0071840,GO:0080090,GO:0080129,GO:0098827,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369,GO:1990111
EggNOG free text desc.The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
EggNOG OGs3X8F4@554915,COG0638@1,KOG0175@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Exons4
Model size498
Cds size498
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85157.19846.1prot_M-pyrifera_M_contig85157.19846.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85157 58..867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.7211106-CDS-M-pyrifera_M_contig85157:57..2111622816759.7211106-CDS-M-pyrifera_M_contig85157:57..211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85157 58..211 +
1692278161.8346086-CDS-M-pyrifera_M_contig85157:57..2111692278161.8346086-CDS-M-pyrifera_M_contig85157:57..211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85157 58..211 +
1622816759.7339447-CDS-M-pyrifera_M_contig85157:272..4841622816759.7339447-CDS-M-pyrifera_M_contig85157:272..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85157 273..484 +
1692278161.849003-CDS-M-pyrifera_M_contig85157:272..4841692278161.849003-CDS-M-pyrifera_M_contig85157:272..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85157 273..484 +
1622816759.7479527-CDS-M-pyrifera_M_contig85157:535..5651622816759.7479527-CDS-M-pyrifera_M_contig85157:535..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85157 536..565 +
1692278161.859073-CDS-M-pyrifera_M_contig85157:535..5651692278161.859073-CDS-M-pyrifera_M_contig85157:535..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85157 536..565 +
1622816759.7610102-CDS-M-pyrifera_M_contig85157:765..8671622816759.7610102-CDS-M-pyrifera_M_contig85157:765..867Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85157 766..867 +
1692278161.8693554-CDS-M-pyrifera_M_contig85157:765..8671692278161.8693554-CDS-M-pyrifera_M_contig85157:765..867Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85157 766..867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85157.19846.1

>prot_M-pyrifera_M_contig85157.19846.1 ID=prot_M-pyrifera_M_contig85157.19846.1|Name=mRNA_M-pyrifera_M_contig85157.19846.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
SQAEAFARTTFEAADSPADLKFAHGTTTLGFVFKHGVVIAVDSRSTQGPY
IASQSVKKVLKITPYLLGTMAGGAADCQFWERELGRRCRLYELRNKKRIT
VAAASKILGNITYSYKGYGLSMGTMIAGWDHTGPNLHYVDSDGTRLKGQR
FSVGSGSTYAYGVLDT
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mRNA from alignment at M-pyrifera_M_contig85157:58..867+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85157.19846.1 ID=mRNA_M-pyrifera_M_contig85157.19846.1|Name=mRNA_M-pyrifera_M_contig85157.19846.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig85157:58..867+ (Macrocystis pyrifera P11B4 male)
TCCCAGGCCGAGGCCTTCGCGCGGACGACCTTCGAGGCGGCCGACTCTCC TGCAGACCTGAAGTTCGCTCACGGCACGACGACACTTGGCTTCGTCTTCA AGCACGGCGTCGTTATCGCTGTCGACTCGCGCTCCACGCAGGGACCATAC ATCGGTACGCGCGCTGTCTCCTCTTGACGCTCGCCTGGACGCTAACGTGG GCCCCCCTCCTGCAGCCTCGCAGTCAGTGAAGAAGGTGCTCAAGATCACG CCTTACTTGCTGGGCACCATGGCCGGAGGTGCGGCCGACTGTCAGTTCTG GGAGCGCGAGCTGGGCCGCCGCTGCCGTCTCTACGAGCTGCGCAACAAGA AGCGCATCACGGTGGCCGCTGCCTCCAAGATTCTTGGCAACATCACCTAC TCCTACAAGGGCTACGGCCTCTCTATGGTAGAACTCCATCTGTGAGACCT TGATTGGGCCAGCACTGACCTTGCCCAGGGAACCATGATTGCCGGATGGG ACCACACGGTGCATACTCGCTCCCTCGCTCCTTCCTCGCTCTTCTCTCTC CCTCCTATCTTTCGTCCTCTTTCTCCCTCCCTGTCCTCTCGCTTCTGTTC TCTCACCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TACGCGCGCATGCCATCTGGTTGTCGACGTCTATACAGGCGGCTTACGGG TTTCTTAGGGGCCTAACTTGCACTATGTGGATAGTGACGGCACTCGCCTC AAGGGACAGAGGTTCTCTGTTGGATCGGGATCTACCTACGCATACGGCGT GCTTGACACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85157:58..867+

>mRNA_M-pyrifera_M_contig85157.19846.1 ID=mRNA_M-pyrifera_M_contig85157.19846.1|Name=mRNA_M-pyrifera_M_contig85157.19846.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig85157:58..867+ (Macrocystis pyrifera P11B4 male)
TCCCAGGCCGAGGCCTTCGCGCGGACGACCTTCGAGGCGGCCGACTCTCC
TGCAGACCTGAAGTTCGCTCACGGCACGACGACACTTGGCTTCGTCTTCA
AGCACGGCGTCGTTATCGCTGTCGACTCGCGCTCCACGCAGGGACCATAC
ATCGTCCCAGGCCGAGGCCTTCGCGCGGACGACCTTCGAGGCGGCCGACT
CTCCTGCAGACCTGAAGTTCGCTCACGGCACGACGACACTTGGCTTCGTC
TTCAAGCACGGCGTCGTTATCGCTGTCGACTCGCGCTCCACGCAGGGACC
ATACATCGCCTCGCAGTCAGTGAAGAAGGTGCTCAAGATCACGCCTTACT
TGCTGGGCACCATGGCCGGAGGTGCGGCCGACTGTCAGTTCTGGGAGCGC
GAGCTGGGCCGCCGCTGCCGTCTCTACGAGCTGCGCAACAAGAAGCGCAT
CACGGTGGCCGCTGCCTCCAAGATTCTTGGCAACATCACCTACTCCTACA
AGGGCTACGGCCTCTCTATGCCTCGCAGTCAGTGAAGAAGGTGCTCAAGA
TCACGCCTTACTTGCTGGGCACCATGGCCGGAGGTGCGGCCGACTGTCAG
TTCTGGGAGCGCGAGCTGGGCCGCCGCTGCCGTCTCTACGAGCTGCGCAA
CAAGAAGCGCATCACGGTGGCCGCTGCCTCCAAGATTCTTGGCAACATCA
CCTACTCCTACAAGGGCTACGGCCTCTCTATGGGAACCATGATTGCCGGA
TGGGACCACACGGGAACCATGATTGCCGGATGGGACCACACGGGGCCTAA
CTTGCACTATGTGGATAGTGACGGCACTCGCCTCAAGGGACAGAGGTTCT
CTGTTGGATCGGGATCTACCTACGCATACGGCGTGCTTGACACCGGGCCT
AACTTGCACTATGTGGATAGTGACGGCACTCGCCTCAAGGGACAGAGGTT
CTCTGTTGGATCGGGATCTACCTACGCATACGGCGTGCTTGACACC
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