mRNA_M-pyrifera_M_contig85151.19845.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85151.19845.1
Unique NamemRNA_M-pyrifera_M_contig85151.19845.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig85151.19845.1 vs. uniprot
Match: A0A2V3J670_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J670_9FLOR)

HSP 1 Score: 60.1 bits (144), Expect = 2.050e-8
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    4 FLDLNNMFIKTYADVVLESPLVAVCREQVAAGRAPAVLVDVVVLRRPFLELVWKQVQRGWFNARSNTNQRGVWYYSLGDVAEPSFRVLPPLVTLPATASSIAEELHLIVGYNLDIEER 357
            + + ++MF+KT+ADVVLE   +A C +           + +V LRRP  + +W Q++ GWF+A    + + VWYY + DV      V    V+    +S   + L   +GYN D+ +R
Sbjct:   43 YAETSHMFVKTFADVVLER--LADCAK-----------ISIVFLRRPARDTIWSQLRLGWFSA--GHSGKNVWYYDINDV-----HVNERQVSYSTNSSDAVDSL---IGYNADVLQR 137
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85151.19845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J670_9FLOR2.050e-832.20Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85151contigM-pyrifera_M_contig85151:489..845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.676385-CDS-M-pyrifera_M_contig85151:488..8241622816759.676385-CDS-M-pyrifera_M_contig85151:488..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85151 489..824 -
1692278161.8023536-CDS-M-pyrifera_M_contig85151:488..8241692278161.8023536-CDS-M-pyrifera_M_contig85151:488..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85151 489..824 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.6899467-UTR-M-pyrifera_M_contig85151:824..8451622816759.6899467-UTR-M-pyrifera_M_contig85151:824..845Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85151 825..845 -
1692278161.8199856-UTR-M-pyrifera_M_contig85151:824..8451692278161.8199856-UTR-M-pyrifera_M_contig85151:824..845Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85151 825..845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85151.19845.1prot_M-pyrifera_M_contig85151.19845.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85151 489..824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85151.19845.1

>prot_M-pyrifera_M_contig85151.19845.1 ID=prot_M-pyrifera_M_contig85151.19845.1|Name=mRNA_M-pyrifera_M_contig85151.19845.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MFIKTYADVVLESPLVAVCREQVAAGRAPAVLVDVVVLRRPFLELVWKQV
QRGWFNARSNTNQRGVWYYSLGDVAEPSFRVLPPLVTLPATASSIAEELH
LIVGYNLDIEER
back to top

mRNA from alignment at M-pyrifera_M_contig85151:489..845-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85151.19845.1 ID=mRNA_M-pyrifera_M_contig85151.19845.1|Name=mRNA_M-pyrifera_M_contig85151.19845.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig85151:489..845- (Macrocystis pyrifera P11B4 male)
GTGTTCCTGGATCTGAACAACATGTTCATCAAGACCTACGCCGACGTGGT
GCTGGAGTCTCCCTTGGTCGCCGTGTGCAGGGAGCAGGTGGCCGCCGGCC
GCGCGCCAGCGGTGCTCGTCGACGTGGTCGTCCTGCGCAGGCCGTTTTTG
GAGCTGGTGTGGAAGCAGGTGCAGAGAGGTTGGTTCAACGCCCGCTCCAA
CACCAACCAGCGGGGAGTGTGGTACTACTCCCTGGGAGACGTCGCGGAGC
CATCCTTCCGGGTCCTGCCGCCGCTCGTTACGCTCCCGGCTACGGCATCG
TCGATCGCCGAGGAGCTGCACCTCATCGTTGGCTACAACCTCGACATCGA
GGAGCGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85151:489..845-

>mRNA_M-pyrifera_M_contig85151.19845.1 ID=mRNA_M-pyrifera_M_contig85151.19845.1|Name=mRNA_M-pyrifera_M_contig85151.19845.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig85151:489..845- (Macrocystis pyrifera P11B4 male)
ATGTTCATCAAGACCTACGCCGACGTGGTGCTGGAGTCTCCCTTGGTCGC
CGTGTGCAGGGAGCAGGTGGCCGCCGGCCGCGCGCCAGCGGTGCTCGTCG
ACGTGGTCGTCCTGCGCAGGCCGTTTTTGGAGCTGGTGTGGAAGCAGGTG
CAGAGAGGTTGGTTCAACGCCCGCTCCAACACCAACCAGCGGGGAGTGTG
GTACTACTCCCTGGGAGACGTCGCGGAGCCATCCTTCCGGGTCCTGCCGC
CGCTCGTTACGCTCCCGGCTACGGCATCGTCGATCGCCGAGGAGCTGCAC
CTCATCGTTGGCTACAACCTCGACATCGAGGAGCGCATGTTCATCAAGAC
CTACGCCGACGTGGTGCTGGAGTCTCCCTTGGTCGCCGTGTGCAGGGAGC
AGGTGGCCGCCGGCCGCGCGCCAGCGGTGCTCGTCGACGTGGTCGTCCTG
CGCAGGCCGTTTTTGGAGCTGGTGTGGAAGCAGGTGCAGAGAGGTTGGTT
CAACGCCCGCTCCAACACCAACCAGCGGGGAGTGTGGTACTACTCCCTGG
GAGACGTCGCGGAGCCATCCTTCCGGGTCCTGCCGCCGCTCGTTACGCTC
CCGGCTACGGCATCGTCGATCGCCGAGGAGCTGCACCTCATCGTTGGCTA
CAACCTCGACATCGAGGAGCGC
back to top