mRNA_M-pyrifera_M_contig85109.19840.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85109.19840.1
Unique NamemRNA_M-pyrifera_M_contig85109.19840.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85109.19840.1 vs. uniprot
Match: M5RX43_9BACT (Uncharacterized protein n=4 Tax=Rhodopirellula TaxID=265488 RepID=M5RX43_9BACT)

HSP 1 Score: 115 bits (287), Expect = 3.750e-29
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 MATRWIKLDSQTEKRLRGFLTTLPEEDRRRFAAIDATQLGHGGIA*VVDVLSISTRTIESGIAELDCLEDDTAAGRVRRPGAGREK 258
            MA    + DSQTE+RLR F  TL E+DRRRFAAI+ATQ GHGGI  +  VL ISTRTIE GIAELD L+DD AAGRVRRPGAGR+K
Sbjct:    1 MAISLREADSQTEQRLRDFAGTLSEKDRRRFAAIEATQRGHGGITYIAGVLRISTRTIERGIAELDHLKDDPAAGRVRRPGAGRKK 86          
BLAST of mRNA_M-pyrifera_M_contig85109.19840.1 vs. uniprot
Match: A0A5C6F5X3_9BACT (Uncharacterized protein n=2 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6F5X3_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 1.430e-20
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   37 EKRLRGFLTTLPEEDRRRFAAIDATQLGHGGIA*VVDVLSISTRTIESGIAELDCLEDDTAAGRVRRPGAGREK 258
            E+ LR F  TL E+DRRRFAA++A Q GHGGI  +  V+  S +TIE G+AELD L DD AAGR+R+PGAGR+K
Sbjct:   10 ERSLREFAATLTEKDRRRFAAVEAKQRGHGGIRYIARVIGCSEKTIERGLAELDSLTDDPAAGRIRQPGAGRKK 83          
BLAST of mRNA_M-pyrifera_M_contig85109.19840.1 vs. uniprot
Match: A0A257W6I1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257W6I1_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 1.550e-19
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   46 LRGFLTTLPEEDRRRFAAIDATQLGHGGIA*VVDVLSISTRTIESGIAELDCLEDDTAAGRVRRPGAGREK 258
            +R F  +L E+DRRRFAA++A+Q GHGGI  +  V+  S +TIE G+AELD L DD  AGRVRRPGAGR+K
Sbjct:    1 MRDFAASLSEKDRRRFAAVEASQRGHGGIRYIAKVIGCSEKTIERGLAELDQLADDPVAGRVRRPGAGRKK 71          
BLAST of mRNA_M-pyrifera_M_contig85109.19840.1 vs. uniprot
Match: A0A5C5V8A8_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula retiformator TaxID=2527970 RepID=A0A5C5V8A8_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 2.410e-19
Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = 1
Query:   19 KLDSQTEKRLRGFLTTLPEEDRRRFAAIDATQLGHGGIA*VVDVLSISTRTIESGIAELDCLEDDTAAGRVRRPGAGREKNDPET 273
            +LD+ TE+R + +  TL E+D+RRFAA++A +LGHGGI  +  +L +S  TIE GI E+  L +D AAGR+RRPG GR+K    T
Sbjct:    8 QLDAATEQRSQAYFATLSEKDQRRFAALEAQRLGHGGIGYIARLLGVSRSTIERGIREMAQLPEDPAAGRIRRPGGGRKKESTPT 92          
BLAST of mRNA_M-pyrifera_M_contig85109.19840.1 vs. uniprot
Match: A0A3B0RDS1_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0RDS1_9ZZZZ)

HSP 1 Score: 89.0 bits (219), Expect = 3.600e-19
Identity = 41/79 (51.90%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   25 DSQTEKRLRGFLTTLPEEDRRRFAAIDATQLGHGGIA*VVDVLSISTRTIESGIAELDCLEDDTAAGRVRRPGAGREKN 261
            D   E+R+R F  +L E+DRRR+AA++A++LGHGGI  + +V+  S  TI+ G  ELD L++D A GR+RRPGAGR+K+
Sbjct:   10 DPIVEERMRSFAASLSEKDRRRYAALEASKLGHGGILYITEVIGCSRSTIDRGTLELDHLDEDPAEGRIRRPGAGRKKS 88          
BLAST of mRNA_M-pyrifera_M_contig85109.19840.1 vs. uniprot
Match: M5S8D7_9BACT (Transposase, Rhodopirellula-type n=7 Tax=Pirellulaceae TaxID=2691357 RepID=M5S8D7_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 4.310e-19
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 3
Query:  444 IRRWQIRSDVPGSGHPDQNRQLERIAELVSIREFSGSPWFSNETKAKEHLGLLYR*DWVRGKHSF 638
            IRR QIR D+PG  HPD++RQ ERIAELVS  E +G PWFS +TKAKEHLGLLYR   VRG  SF
Sbjct:   31 IRRRQIRKDIPGGEHPDRDRQFERIAELVSQYETAGEPWFSIDTKAKEHLGLLYRKGRVRGNRSF 95          
BLAST of mRNA_M-pyrifera_M_contig85109.19840.1 vs. uniprot
Match: A0A1Q8BKS2_9CYAN (Uncharacterized protein (Fragment) n=1 Tax=Cyanobacteria bacterium 13_1_20CM_4_61_6 TaxID=1805100 RepID=A0A1Q8BKS2_9CYAN)

HSP 1 Score: 93.2 bits (230), Expect = 1.420e-18
Identity = 77/257 (29.96%), Postives = 116/257 (45.14%), Query Frame = 1
Query:   31 QTEKRLRGFLTTLPEEDRRRFAAIDATQLGHGGIA*VVDVLSISTRTIESGIAELDCLEDDTAAGRVRRPGAGREKNDPETPEENNWIQ-CLAV*AVGAPGEEDIAHTGLSPQVHSERSSKAGTPVGQDAAVDWLNEAKFVGGRSAATFPAADTRTRTASLNALPSWFQSANSAAVPGFRTKPKRKSTLVFSIAKTGFEANIRSRLPLVGRWRDHTARD--------RWSKSEFGSHQPLSLACTSEFACDSLRRFW 774
            + E+ LR +  +L E+DRRRFAA++A +LGHGG   +  VL    +TI+ G+ EL  L DD A  RVR+PG GR+K + +  E    +Q  +     G P   D+  T ++PQ  ++R       V        L+   F   + A   P  D+  R A    +    Q    A  P      K+K  L  ++ + G +   +  +P+        AR           +++    H  LS   T+ FACDSLR FW
Sbjct:   12 EIEQLLRQYYQSLSEKDRRRFAAVEAIRLGHGGTRYIATVLGCDPQTIQEGMRELKQLPDDPAGHRVRKPGGGRKKTEDKHAELIQQVQHTIQDRTAGDPMRADVVWTDVTPQEIADRLQAQAVSVSPRIVRRILDTLGFARRQMAKVLPGGDSPQRDAQFRHVSHLIQEFLEAGNPILSIDTKKKEVLG-TLYRDG-KVYCQQAIPVFDHDFPSLARGVIIPHGIYDLAQNHGWIHLGLSHDTTA-FACDSLRLFW 265          
BLAST of mRNA_M-pyrifera_M_contig85109.19840.1 vs. uniprot
Match: A0A5C6CX76_9BACT (Uncharacterized protein n=2 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6CX76_9BACT)

HSP 1 Score: 85.5 bits (210), Expect = 1.710e-17
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   19 KLDSQTEKRLRGFLTTLPEEDRRRFAAIDATQLGHGGIA*VVDVLSISTRTIESGIAELDCLEDDTAAGRVRRPGAGREK 258
            +LD   E+R + +  TL E+D+RRFAA++A +LGHGGI  V  +L +S  TIE GI E++    D AAGRVRRPG GR+K
Sbjct:   28 QLDKAAEQRSQAYFATLSEKDQRRFAALEAQRLGHGGIIYVAKLLGVSRSTIERGIREIEQFPVDPAAGRVRRPGGGRKK 107          
BLAST of mRNA_M-pyrifera_M_contig85109.19840.1 vs. uniprot
Match: UPI001F0DE6E7 (ISAzo13 family transposase n=1 Tax=Thiorhodococcus mannitoliphagus TaxID=329406 RepID=UPI001F0DE6E7)

HSP 1 Score: 89.7 bits (221), Expect = 3.950e-17
Identity = 60/194 (30.93%), Postives = 101/194 (52.06%), Query Frame = 1
Query:   46 LRGFLTTLPEEDRRRFAAIDATQLGHGGIA*VVDVLSISTRTIESGIAELDCLEDDTAA------GRVRRPGAGREKN---DPETPEENNWIQCLAV*AVGAPGEEDIAHTGLSPQVHSERSSKAGTPVGQDAAVDWLNEAKFVGG--RSAATFPAADTRTRTASLNALPSWFQSANSAAVPGFRTKPKRKSTL 594
            +R +  +LPE+ RRR+AA++A ++G+GG++ V  VL +S  T+ SG++EL+  +DD          RVRRPGAGR      D E  E+ + +  L V + G+P +E +  T L+P   +++  + G  + ++ A  WL++A F     R        D + R A    + +  + A    +P F    K+K  L
Sbjct:    1 MRRYSRSLPEDHRRRYAALEAEKIGYGGVSYVARVLGMSRATVHSGLSELEQFDDDNPQRPSGKPDRVRRPGAGRPPRLEVDAEAQEQLDEV--LEVHSAGSPTDEHVRWTDLNPGRLAQQMLERGITISRNTAAAWLDQAGFRRRALRKELITGVVDPQERDAQFRYIAALRRQAQHKGIPVFSVDTKKKELL 192          
BLAST of mRNA_M-pyrifera_M_contig85109.19840.1 vs. uniprot
Match: A0A3M1BEC6_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1BEC6_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 6.840e-17
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   46 LRGFLTTLPEEDRRRFAAIDATQLGHGGIA*VVDVLSISTRTIESGIAELDCLEDDTAAGRVRRPGAGREKNDPETPEEN 285
            +R F  +L E+DRRRF AI+A + G GG++ +  V+  S  T+E G AELD L++D AAGRVRRPGAGR+K    +P+ N
Sbjct:    1 MRDFADSLSEKDRRRFVAIEAERHGVGGVSWICRVVGCSAHTVERGRAELDSLDNDPAAGRVRRPGAGRKKRSNRSPKPN 80          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85109.19840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M5RX43_9BACT3.750e-2970.93Uncharacterized protein n=4 Tax=Rhodopirellula Tax... [more]
A0A5C6F5X3_9BACT1.430e-2060.81Uncharacterized protein n=2 Tax=Rubripirellula ten... [more]
A0A257W6I1_9BACT1.550e-1960.56Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A5C5V8A8_9BACT2.410e-1950.59Uncharacterized protein n=1 Tax=Blastopirellula re... [more]
A0A3B0RDS1_9ZZZZ3.600e-1951.90Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
M5S8D7_9BACT4.310e-1969.23Transposase, Rhodopirellula-type n=7 Tax=Pirellula... [more]
A0A1Q8BKS2_9CYAN1.420e-1829.96Uncharacterized protein (Fragment) n=1 Tax=Cyanoba... [more]
A0A5C6CX76_9BACT1.710e-1752.50Uncharacterized protein n=2 Tax=Novipirellula arti... [more]
UPI001F0DE6E73.950e-1730.93ISAzo13 family transposase n=1 Tax=Thiorhodococcus... [more]
A0A3M1BEC6_9BACT6.840e-1751.25Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85109contigM-pyrifera_M_contig85109:94..867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size774
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.483859-CDS-M-pyrifera_M_contig85109:93..2311622816759.483859-CDS-M-pyrifera_M_contig85109:93..231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85109 94..231 +
1692278161.695305-CDS-M-pyrifera_M_contig85109:93..2311692278161.695305-CDS-M-pyrifera_M_contig85109:93..231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85109 94..231 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.497013-UTR-M-pyrifera_M_contig85109:231..8671622816759.497013-UTR-M-pyrifera_M_contig85109:231..867Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85109 232..867 +
1692278161.7147489-UTR-M-pyrifera_M_contig85109:231..8671692278161.7147489-UTR-M-pyrifera_M_contig85109:231..867Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85109 232..867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85109.19840.1prot_M-pyrifera_M_contig85109.19840.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85109 94..231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85109.19840.1

>prot_M-pyrifera_M_contig85109.19840.1 ID=prot_M-pyrifera_M_contig85109.19840.1|Name=mRNA_M-pyrifera_M_contig85109.19840.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MATRWIKLDSQTEKRLRGFLTTLPEEDRRRFAAIDATQLGHGGIA*
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mRNA from alignment at M-pyrifera_M_contig85109:94..867+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85109.19840.1 ID=mRNA_M-pyrifera_M_contig85109.19840.1|Name=mRNA_M-pyrifera_M_contig85109.19840.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig85109:94..867+ (Macrocystis pyrifera P11B4 male)
ATGGCCACGAGATGGATCAAGTTAGATTCGCAGACTGAGAAACGCCTGCG TGGCTTTTTGACTACCTTGCCCGAGGAGGATCGGCGTCGATTTGCAGCCA TCGACGCCACGCAGCTTGGTCACGGTGGGATTGCCTAAGTTGTTGATGTA TTGAGCATTTCGACGCGAACGATTGAGTCGGGCATCGCCGAACTCGATTG CCTGGAAGATGACACGGCTGCCGGGCGAGTTCGACGGCCTGGTGCGGGGC GAGAAAAAAACGATCCCGAAACGCCGGAAGAAAACAACTGGATTCAGTGC CTCGCCGTCTAGGCTGTTGGCGCCCCAGGCGAAGAAGACATTGCGCACAC GGGCTTGTCTCCGCAAGTTCACTCCGAGAGATCATCAAAGGCGGGAACGC CAGTTGGCCAGGACGCAGCTGTAGATTGGCTTAACGAGGCCAAATTCGTC GGTGGCAGATCCGCAGCGACGTTCCCGGCAGCGGACACCCGGACCAGAAC CGCCAGCTTGAACGCATTGCCGAGCTGGTTTCAATCCGCGAATTCAGCGG CAGTCCCTGGTTTTCGAACGAAACCAAAGCGAAAGAGCACCTTGGTCTTC TCTATCGCTAAGACTGGGTTCGAGGCAAACATTCGTTCACGACTTCCCCT CGTGGGTAGATGGCGTGATCATACCGCACGGGATCGCTGGTCAAAAAGCG AATTTGGATCACACCAGCCTCTGTCTCTCGCATGCACCAGCGAATTTGCC TGTGATTCGCTCAGGCGTTTCTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85109:94..867+

>mRNA_M-pyrifera_M_contig85109.19840.1 ID=mRNA_M-pyrifera_M_contig85109.19840.1|Name=mRNA_M-pyrifera_M_contig85109.19840.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig85109:94..867+ (Macrocystis pyrifera P11B4 male)
ATGGCCACGAGATGGATCAAGTTAGATTCGCAGACTGAGAAACGCCTGCG
TGGCTTTTTGACTACCTTGCCCGAGGAGGATCGGCGTCGATTTGCAGCCA
TCGACGCCACGCAGCTTGGTCACGGTGGGATTGCCTAAATGGCCACGAGA
TGGATCAAGTTAGATTCGCAGACTGAGAAACGCCTGCGTGGCTTTTTGAC
TACCTTGCCCGAGGAGGATCGGCGTCGATTTGCAGCCATCGACGCCACGC
AGCTTGGTCACGGTGGGATTGCCTAA
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