mRNA_M-pyrifera_M_contig85086.19827.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85086.19827.1
Unique NamemRNA_M-pyrifera_M_contig85086.19827.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85086.19827.1 vs. uniprot
Match: A0A2D5FED8_9GAMM (Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5FED8_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 9.140e-21
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 LTELEDTGFVAKVLGRYDILVMGLLGSARELSQLLSSRIERLDGVRKVHTSQVLSFVKYDHHWTAI 198
            L  L +TGFVA VLGRYDILVMGLLG+  EL +LL+ RIE L GV KVHTSQVL FVKYD  WTA+
Sbjct:  246 LAALPETGFVAIVLGRYDILVMGLLGNPGELERLLAERIEPLSGVSKVHTSQVLGFVKYDVRWTAL 311          
BLAST of mRNA_M-pyrifera_M_contig85086.19827.1 vs. uniprot
Match: A0A3N2E1S3_9GAMM (Lrp/AsnC family transcriptional regulator for asnA, asnC and gidA n=2 Tax=Sinobacterium caligoides TaxID=933926 RepID=A0A3N2E1S3_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 2.130e-8
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 LTELEDTGFVAKVLGRYDILVMGLLGSARELSQLLSSRIERLDGVRKVHTSQVLSFVKYDHHWTAIL 201
            L+E+   GFVAK+LGR+DIL + L+    +L+  L S I  + G+R+  TS  ++FVK+D+  + I+
Sbjct:   88 LSEIPAMGFVAKMLGRFDILAITLVQDTEQLTDFLHSNISTIKGIRRTETSLGVNFVKHDYRVSRIV 154          
BLAST of mRNA_M-pyrifera_M_contig85086.19827.1 vs. uniprot
Match: A0A2E7IMF4_9GAMM (AsnC family transcriptional regulator n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E7IMF4_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 2.130e-8
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 LTELEDTGFVAKVLGRYDILVMGLLGSARELSQLLSSRIERLDGVRKVHTSQVLSFVKYDHHWTAILA 204
            L E++  GFVA  LGR+DIL + L+ +  +L+  L+SR+  + GVR+   S  ++FVK+D+  + ILA
Sbjct:   88 LAEVQQIGFVAVTLGRFDILAITLVQNNGQLADFLNSRVSVIPGVRRTECSLGVTFVKHDYRMSKILA 155          
BLAST of mRNA_M-pyrifera_M_contig85086.19827.1 vs. uniprot
Match: UPI001F2CE4A0 (Lrp/AsnC family transcriptional regulator n=1 Tax=Sinobacterium norvegicum TaxID=1641715 RepID=UPI001F2CE4A0)

HSP 1 Score: 54.7 bits (130), Expect = 1.670e-7
Identity = 25/67 (37.31%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 LTELEDTGFVAKVLGRYDILVMGLLGSARELSQLLSSRIERLDGVRKVHTSQVLSFVKYDHHWTAIL 201
            L+++ + GFVAK+LGR+DIL + L+    +L+  L + I  + G+R+  TS  ++FVK+D+  + I+
Sbjct:   89 LSDIPEMGFVAKMLGRFDILAITLVQDPEQLTGFLHTNISTIKGIRRTETSLGVNFVKHDYRVSHIV 155          
BLAST of mRNA_M-pyrifera_M_contig85086.19827.1 vs. uniprot
Match: J9DF16_9PROT (HTH asnC-type domain-containing protein n=9 Tax=Alphaproteobacteria TaxID=28211 RepID=J9DF16_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 1.870e-7
Identity = 25/72 (34.72%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    1 LTELEDTGFVAKVLGRYDILVMGLLGSARELSQLLSSRIERLDGVRKVHTSQVLSFVKYDHHWTAILAPEEN 216
            +  + D G V  +LGR+DI+ +GL        +L++  I  +DGVR++ TS V   +KYD+    I+ P E+
Sbjct:   86 IANIPDIGAVIILLGRFDIMAIGLFDGLSNFQKLVNKSILSIDGVRRIETSAVSEIIKYDNKVAKIITPLED 157          
BLAST of mRNA_M-pyrifera_M_contig85086.19827.1 vs. uniprot
Match: A0A0Q6TTQ4_9CAUL (HTH asnC-type domain-containing protein n=2 Tax=unclassified Caulobacter TaxID=2648921 RepID=A0A0Q6TTQ4_9CAUL)

HSP 1 Score: 53.1 bits (126), Expect = 6.920e-7
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    1 LTELEDTGFVAKVLGRYDILVMGLLGSARELSQLLSSRIERLDGVRKVHTSQVLSFVKYDHHWTAILAPE 210
            L+ +E+ G V  +LGRY+++ MGL  S  ++  L+ +RI+ L GVR V  S  +   KYD     I  P+
Sbjct:   87 LSAIEEIGCVIVLLGRYNLMAMGLFKSVEQVDDLIRARIKTLPGVRDVEVSTAIHSFKYDVRMARITRPK 156          
BLAST of mRNA_M-pyrifera_M_contig85086.19827.1 vs. uniprot
Match: UPI000C7A1B7F (Lrp/AsnC family transcriptional regulator n=1 Tax=Oceanicoccus sp. KOV_DT_Chl TaxID=1904639 RepID=UPI000C7A1B7F)

HSP 1 Score: 51.2 bits (121), Expect = 3.440e-6
Identity = 24/67 (35.82%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 LTELEDTGFVAKVLGRYDILVMGLLGSARELSQLLSSRIERLDGVRKVHTSQVLSFVKYDHHWTAIL 201
            L+ + + GFVAK LGR DIL + ++ +  +L+  L S I  ++GVR+   S  ++F+K+D+  + I+
Sbjct:   88 LSAIPEIGFVAKTLGRSDILAITMVQNNAQLASFLHSTISGIEGVRRTECSLGVNFIKHDYRMSRIV 154          
BLAST of mRNA_M-pyrifera_M_contig85086.19827.1 vs. uniprot
Match: UPI00042A06A7 (Lrp/AsnC family transcriptional regulator n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00042A06A7)

HSP 1 Score: 51.2 bits (121), Expect = 3.980e-6
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    1 LTELEDTGFVAKVLGRYDILVMGLLGSARELSQLLSSRIERLDGVRKVHTSQVLSFVKYDHHWTAILAP 207
            + EL +   V  +LGR+DIL +GL      + Q+ S++I  + GVR V TS V+  VKYD+    I+ P
Sbjct:   87 VAELSEINAVIILLGRFDILAIGLFEGLSAVHQVASNKILDIKGVRLVETSVVVDVVKYDNRVAKIMTP 155          
BLAST of mRNA_M-pyrifera_M_contig85086.19827.1 vs. uniprot
Match: UPI001C99E7FE (Lrp/AsnC family transcriptional regulator n=2 Tax=unclassified Azospirillum TaxID=2630922 RepID=UPI001C99E7FE)

HSP 1 Score: 50.1 bits (118), Expect = 1.090e-5
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 LTELEDTGFVAKVLGRYDILVMGLLGSARELSQLLSSRIERLDGVRKVHTSQVLSFVKYDHHWTAIL 201
            L+ +   G V  +LGRY+++ MGL  S  ++ +L+S+RI+ L GVR+V  S  +  +KYD     I+
Sbjct:   87 LSSIPSIGCVMVLLGRYNLMAMGLFTSLEQVHELVSTRIKILPGVREVEVSVSIHSLKYDARMARIV 153          
BLAST of mRNA_M-pyrifera_M_contig85086.19827.1 vs. uniprot
Match: A0A534EP97_9GAMM (Lrp/AsnC family transcriptional regulator n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534EP97_9GAMM)

HSP 1 Score: 49.7 bits (117), Expect = 1.590e-5
Identity = 22/61 (36.07%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    1 LTELEDTGFVAKVLGRYDILVMGLLGSARELSQLLSSRIERLDGVRKVHTSQVLSFVKYDH 183
            +  + + G V  +LGR+DIL +GL G+  +++ ++++RI  L GVR V TS  +  +K++H
Sbjct:   89 IAAMPEIGCVILMLGRFDILAIGLFGALEDIAAIVNNRILALPGVRHVETSIAVKTLKHEH 149          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85086.19827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2D5FED8_9GAMM9.140e-2171.21Uncharacterized protein n=1 Tax=Haliea sp. TaxID=1... [more]
A0A3N2E1S3_9GAMM2.130e-840.30Lrp/AsnC family transcriptional regulator for asnA... [more]
A0A2E7IMF4_9GAMM2.130e-841.18AsnC family transcriptional regulator n=2 Tax=Gamm... [more]
UPI001F2CE4A01.670e-737.31Lrp/AsnC family transcriptional regulator n=1 Tax=... [more]
J9DF16_9PROT1.870e-734.72HTH asnC-type domain-containing protein n=9 Tax=Al... [more]
A0A0Q6TTQ4_9CAUL6.920e-737.14HTH asnC-type domain-containing protein n=2 Tax=un... [more]
UPI000C7A1B7F3.440e-635.82Lrp/AsnC family transcriptional regulator n=1 Tax=... [more]
UPI00042A06A73.980e-639.13Lrp/AsnC family transcriptional regulator n=1 Tax=... [more]
UPI001C99E7FE1.090e-537.31Lrp/AsnC family transcriptional regulator n=2 Tax=... [more]
A0A534EP97_9GAMM1.590e-536.07Lrp/AsnC family transcriptional regulator n=3 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85086contigM-pyrifera_M_contig85086:651..869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.8973248-CDS-M-pyrifera_M_contig85086:650..8691622816758.8973248-CDS-M-pyrifera_M_contig85086:650..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85086 651..869 -
1692278161.3636882-CDS-M-pyrifera_M_contig85086:650..8691692278161.3636882-CDS-M-pyrifera_M_contig85086:650..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85086 651..869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85086.19827.1prot_M-pyrifera_M_contig85086.19827.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85086 651..869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85086.19827.1

>prot_M-pyrifera_M_contig85086.19827.1 ID=prot_M-pyrifera_M_contig85086.19827.1|Name=mRNA_M-pyrifera_M_contig85086.19827.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
LTELEDTGFVAKVLGRYDILVMGLLGSARELSQLLSSRIERLDGVRKVHT
SQVLSFVKYDHHWTAILAPEEN*
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mRNA from alignment at M-pyrifera_M_contig85086:651..869-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85086.19827.1 ID=mRNA_M-pyrifera_M_contig85086.19827.1|Name=mRNA_M-pyrifera_M_contig85086.19827.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig85086:651..869- (Macrocystis pyrifera P11B4 male)
TTGACCGAGCTGGAAGATACCGGTTTCGTGGCCAAGGTCCTCGGCCGCTA CGATATTCTGGTGATGGGTTTGCTGGGTAGCGCGCGGGAGTTGAGCCAGT TGTTGAGTAGTCGCATCGAACGGCTGGACGGCGTGCGCAAGGTACACACG TCGCAGGTATTGAGCTTCGTGAAATACGACCATCACTGGACGGCAATTCT GGCGCCTGAGGAAAACTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85086:651..869-

>mRNA_M-pyrifera_M_contig85086.19827.1 ID=mRNA_M-pyrifera_M_contig85086.19827.1|Name=mRNA_M-pyrifera_M_contig85086.19827.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig85086:651..869- (Macrocystis pyrifera P11B4 male)
TTGACCGAGCTGGAAGATACCGGTTTCGTGGCCAAGGTCCTCGGCCGCTA
CGATATTCTGGTGATGGGTTTGCTGGGTAGCGCGCGGGAGTTGAGCCAGT
TGTTGAGTAGTCGCATCGAACGGCTGGACGGCGTGCGCAAGGTACACACG
TCGCAGGTATTGAGCTTCGTGAAATACGACCATCACTGGACGGCAATTCT
GGCGCCTGAGGAAAACTAGTTGACCGAGCTGGAAGATACCGGTTTCGTGG
CCAAGGTCCTCGGCCGCTACGATATTCTGGTGATGGGTTTGCTGGGTAGC
GCGCGGGAGTTGAGCCAGTTGTTGAGTAGTCGCATCGAACGGCTGGACGG
CGTGCGCAAGGTACACACGTCGCAGGTATTGAGCTTCGTGAAATACGACC
ATCACTGGACGGCAATTCTGGCGCCTGAGGAAAACTAG
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