mRNA_M-pyrifera_M_contig85028.19818.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85028.19818.1
Unique NamemRNA_M-pyrifera_M_contig85028.19818.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85028.19818.1 vs. uniprot
Match: A0A158QGI6_RODNA (Uncharacterized protein n=3 Tax=Hymenolepididae TaxID=6214 RepID=A0A158QGI6_RODNA)

HSP 1 Score: 59.7 bits (143), Expect = 5.010e-8
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1
Query:   43 LRVIENHDVLGMKAAVRRGADINARNAVGESLLHYAADRGNLAIVKLLLEAGADVNAVEPEANQTPL 243
            L  ++N DVL  + A+R GA++ A ++ G +LL  A + GNL +VKLLL   ADV+A +PE + TPL
Sbjct:  533 LPAVQNGDVLKAQEALRWGANVEAHDSHGNTLLLIATEAGNLEMVKLLLRYQADVSATDPELSDTPL 599          
BLAST of mRNA_M-pyrifera_M_contig85028.19818.1 vs. uniprot
Match: A0A3A0DAR0_9BACT (Uncharacterized protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A3A0DAR0_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 6.010e-7
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   34 EPLLRVIENHDVLGMKAAVRRGADINARNAVGESLLHYAADRGNLAIVKLLLEAGADVN 210
            E L       D L +KAA+ +GA++NA+   G + L YAADRG + ++K+LLE GADVN
Sbjct:  115 EELWTAARKGDTLAVKAALAKGAEVNAKTRYGATALSYAADRGFVDVIKVLLEHGADVN 173          
BLAST of mRNA_M-pyrifera_M_contig85028.19818.1 vs. uniprot
Match: A0A4R3Y2H1_9PROT (Uncharacterized protein n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3Y2H1_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 7.740e-7
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   40 LLRVIENHDVLGMKAAVRRGADINARNAVGESLLHYAADRGNLAIVKLLLEAGADVNAVEPEANQTPLM 246
            LL  +++ DV  +   +  GAD+N R+A G++LL  AA+ GNLA+VK LL AGAD+ A   E   TPLM
Sbjct:    5 LLDAVKSGDVSKVSGLLS-GADVNMRDAEGDTLLMIAANSGNLAMVKALLAAGADIKATN-EVGWTPLM 71          
BLAST of mRNA_M-pyrifera_M_contig85028.19818.1 vs. uniprot
Match: A0A7Y5G1N3_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5G1N3_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 7.770e-7
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   34 EPLLRVIENHDVLGMKAAVRRGADINARNAVGESLLHYAADRGNLAIVKLLLEAGADVNAVEPEAN 231
            E L       D   +KAA+ +GA++NA+   G + L YAADRG + ++++LLE GADVNA +   N
Sbjct:   26 EELWAAARKGDTTAVKAALNKGAEVNAKTRYGATALSYAADRGLVEVIRVLLEHGADVNAKDTFYN 91          
BLAST of mRNA_M-pyrifera_M_contig85028.19818.1 vs. uniprot
Match: A0A3B5QGB4_XIPMA (Uncharacterized protein n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=A0A3B5QGB4_XIPMA)

HSP 1 Score: 52.8 bits (125), Expect = 1.940e-6
Identity = 28/72 (38.89%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   40 LLRVIENHDVLGMKAAVRRGADINARNAVGESLLHYAADRGNLAIVKLLLEAGADVNAVEPEANQTPLMFAC 255
            ++  ++N +V  ++  ++ G D+N ++  G   LHYAAD G + ++K LL  GADVNA +     TPLM+AC
Sbjct:    6 VIWALKNGEVNEVQGVLKTGEDVN-QSLEGRKPLHYAADFGQVDMIKYLLHKGADVNATDKH-GLTPLMYAC 75          
BLAST of mRNA_M-pyrifera_M_contig85028.19818.1 vs. uniprot
Match: A0A1F2ZMX7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26 TaxID=1797226 RepID=A0A1F2ZMX7_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 1.950e-6
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   31 VEPLLRVIENHDVLGMKAAVRRG-ADINARNAVGESLLHYAADRGNLAIVKLLLEAGADVNAVEPEANQTPLMFACV 258
            +  L+  + N+DV G++   + G A +N +N  G + LH A   GN  IVK+LLE+GAD NA++ E   TPLM A +
Sbjct:   47 INALMSAVVNNDVNGVRFFAKAGRALLNQKNFGGATALHLACREGNFEIVKILLESGADANAIDNE-GWTPLMRAAL 122          
BLAST of mRNA_M-pyrifera_M_contig85028.19818.1 vs. uniprot
Match: A0A7F5R695_AGRPL (ankyrin repeat domain-containing protein 39 n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R695_AGRPL)

HSP 1 Score: 53.9 bits (128), Expect = 2.020e-6
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   88 VRRGADINARNAVGESLLHYAADRGNLAIVKLLLEAGADVNAVEPEANQTPLMFAC 255
            +R G D++ R+A G + LHYAA  G L + +LL++ GAD+NA+    N T L  AC
Sbjct:   50 LRSGTDVDKRDAAGYTALHYAARNGFLDVCQLLIQNGADINAITKSGNATALHRAC 105          
BLAST of mRNA_M-pyrifera_M_contig85028.19818.1 vs. uniprot
Match: A0A5D6XJR5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJR5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.060e-6
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   28 DVEPLLRVIENHDVLGMKAAVRRGAD-INARNAVGESLLHYAADRGNLAIVKLLLEAGADVNAVEPEA-NQTPLMFACV 258
            D  P        DV  + A +   ++ ++AR+  G + LH+A DRG +A+  LLLE GADVNA+E     +TPL+FA +
Sbjct:   19 DTTPTFETAREGDVATLAAVLDADSEQLHARDKYGLTALHWACDRGQVAVATLLLERGADVNALEKRIFKRTPLLFAAL 97          
BLAST of mRNA_M-pyrifera_M_contig85028.19818.1 vs. uniprot
Match: A0A8H3EVC1_9LECA (NACHT domain-containing protein n=1 Tax=Gomphillus americanus TaxID=1940652 RepID=A0A8H3EVC1_9LECA)

HSP 1 Score: 54.7 bits (130), Expect = 2.930e-6
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   88 VRRGADINARNAVGESLLHYAADRGNLAIVKLLLEAGADVNAVEPEANQTPLMFA 252
            +R G D+N +  + ++ L  A DRG++A  KLL+EAGADVNA +     TPL FA
Sbjct:  899 IRAGVDVNGQGGIHDNALQAAIDRGHVATAKLLVEAGADVNAQDELYGHTPLHFA 953          
BLAST of mRNA_M-pyrifera_M_contig85028.19818.1 vs. uniprot
Match: U6GRG6_EIMAC (Pfs, related (Fragment) n=1 Tax=Eimeria acervulina TaxID=5801 RepID=U6GRG6_EIMAC)

HSP 1 Score: 54.3 bits (129), Expect = 3.490e-6
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   91 RRGADINARNAVGESLLHYAADRGNLAIVKLLLEAGADVNAVEPEANQTPLMFA 252
            RR ADI  R+A G +LLH+AA     +I+KLL+EAGADVNA   E  QTPLM+A
Sbjct:  169 RRFADI--RDASGYTLLHWAALCNERSIMKLLIEAGADVNARASETKQTPLMWA 220          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85028.19818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A158QGI6_RODNA5.010e-846.27Uncharacterized protein n=3 Tax=Hymenolepididae Ta... [more]
A0A3A0DAR0_9BACT6.010e-747.46Uncharacterized protein n=1 Tax=candidate division... [more]
A0A4R3Y2H1_9PROT7.740e-747.83Uncharacterized protein n=1 Tax=Sulfurirhabdus aut... [more]
A0A7Y5G1N3_9BACT7.770e-742.42Ankyrin repeat domain-containing protein n=1 Tax=c... [more]
A0A3B5QGB4_XIPMA1.940e-638.89Uncharacterized protein n=1 Tax=Xiphophorus macula... [more]
A0A1F2ZMX7_9PROT1.950e-641.56Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A7F5R695_AGRPL2.020e-644.64ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
A0A5D6XJR5_9STRA2.060e-639.24Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8H3EVC1_9LECA2.930e-647.27NACHT domain-containing protein n=1 Tax=Gomphillus... [more]
U6GRG6_EIMAC3.490e-659.26Pfs, related (Fragment) n=1 Tax=Eimeria acervulina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85028contigM-pyrifera_M_contig85028:12..353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-09_001030.1
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.5164196-CDS-M-pyrifera_M_contig85028:11..3531622816758.5164196-CDS-M-pyrifera_M_contig85028:11..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85028 12..353 +
1692278161.182584-CDS-M-pyrifera_M_contig85028:11..3531692278161.182584-CDS-M-pyrifera_M_contig85028:11..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85028 12..353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85028.19818.1prot_M-pyrifera_M_contig85028.19818.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85028 12..353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85028.19818.1

>prot_M-pyrifera_M_contig85028.19818.1 ID=prot_M-pyrifera_M_contig85028.19818.1|Name=mRNA_M-pyrifera_M_contig85028.19818.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
EEDEEEEEEDVEPLLRVIENHDVLGMKAAVRRGADINARNAVGESLLHYA
ADRGNLAIVKLLLEAGADVNAVEPEANQTPLMFACVCGNVDIAEALIRAG
ADAGRTDSDDCDAL
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mRNA from alignment at M-pyrifera_M_contig85028:12..353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85028.19818.1 ID=mRNA_M-pyrifera_M_contig85028.19818.1|Name=mRNA_M-pyrifera_M_contig85028.19818.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig85028:12..353+ (Macrocystis pyrifera P11B4 male)
GAAGAAGATGAGGAGGAGGAAGAGGAGGATGTGGAACCACTGTTGCGTGT GATTGAAAATCATGATGTCTTGGGAATGAAAGCTGCTGTAAGAAGAGGTG CCGATATCAATGCAAGGAATGCTGTGGGAGAGTCACTGTTGCATTATGCA GCAGATCGAGGCAATCTTGCCATTGTCAAATTACTGTTGGAAGCTGGAGC TGACGTGAATGCTGTAGAACCAGAAGCAAACCAAACTCCCCTCATGTTTG CATGTGTGTGTGGCAATGTAGACATTGCAGAGGCATTAATTCGAGCAGGA GCAGATGCTGGACGTACTGATTCTGATGATTGTGATGCACTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85028:12..353+

>mRNA_M-pyrifera_M_contig85028.19818.1 ID=mRNA_M-pyrifera_M_contig85028.19818.1|Name=mRNA_M-pyrifera_M_contig85028.19818.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig85028:12..353+ (Macrocystis pyrifera P11B4 male)
GAAGAAGATGAGGAGGAGGAAGAGGAGGATGTGGAACCACTGTTGCGTGT
GATTGAAAATCATGATGTCTTGGGAATGAAAGCTGCTGTAAGAAGAGGTG
CCGATATCAATGCAAGGAATGCTGTGGGAGAGTCACTGTTGCATTATGCA
GCAGATCGAGGCAATCTTGCCATTGTCAAATTACTGTTGGAAGCTGGAGC
TGACGTGAATGCTGTAGAACCAGAAGCAAACCAAACTCCCCTCATGTTTG
CATGTGTGTGTGGCAATGTAGACATTGCAGAGGCATTAATTCGAGCAGGA
GCAGATGCTGGACGTACTGATTCTGATGATTGTGATGCACTGGAAGAAGA
TGAGGAGGAGGAAGAGGAGGATGTGGAACCACTGTTGCGTGTGATTGAAA
ATCATGATGTCTTGGGAATGAAAGCTGCTGTAAGAAGAGGTGCCGATATC
AATGCAAGGAATGCTGTGGGAGAGTCACTGTTGCATTATGCAGCAGATCG
AGGCAATCTTGCCATTGTCAAATTACTGTTGGAAGCTGGAGCTGACGTGA
ATGCTGTAGAACCAGAAGCAAACCAAACTCCCCTCATGTTTGCATGTGTG
TGTGGCAATGTAGACATTGCAGAGGCATTAATTCGAGCAGGAGCAGATGC
TGGACGTACTGATTCTGATGATTGTGATGCACTG
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